RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 SMC5Q8IY18 1101 aa11.07□□□□□ -0.64
TDP1-204ENST00000545686 SMC4Q9NTJ3 1288 aa11.06□□□□□ -0.64
TDP1-204ENST00000545686 ATF7IPQ6VMQ6 1270 aa11.06□□□□□ -0.64
TDP1-204ENST00000545686 PLEKHF1Q96S99 279 aa11.06□□□□□ -0.64
TDP1-204ENST00000545686 KIF16BQ96L93 1317 aa11.05□□□□□ -0.64
TDP1-204ENST00000545686 CHGAP10645 457 aaKnown RBP11.05□□□□□ -0.64
TDP1-204ENST00000545686 TRIM27P14373 513 aa11.05□□□□□ -0.64
TDP1-204ENST00000545686 ISY1Q9ULR0 285 aaKnown RBP11.05□□□□□ -0.64
TDP1-204ENST00000545686 GOLGA6L3A6NEY3 463 aa11.04□□□□□ -0.64
TDP1-204ENST00000545686 A0A1W2PP64 1363 aa11.04□□□□□ -0.64
TDP1-204ENST00000545686 ARHGAP31Q2M1Z3 1444 aa11.04□□□□□ -0.64
TDP1-204ENST00000545686 DDX11L8A8MPP1 907 aa11.04□□□□□ -0.64
TDP1-204ENST00000545686 VGFO15240 615 aaPredicted RBP11.04□□□□□ -0.64
TDP1-204ENST00000545686 TMPOP42166 694 aaKnown RBP11.04□□□□□ -0.64
TDP1-204ENST00000545686 TMEM132EQ6IEE7 984 aa11.04□□□□□ -0.64
TDP1-204ENST00000545686 ATAD2Q6PL18 1390 aa11.04□□□□□ -0.64
TDP1-204ENST00000545686 EXOSC9Q06265 439 aaKnown RBP11.03□□□□□ -0.64
TDP1-204ENST00000545686 PPIP5K1Q6PFW1 1433 aa11.03□□□□□ -0.64
TDP1-204ENST00000545686 HSCBQ8IWL3 235 aa11.03□□□□□ -0.64
TDP1-204ENST00000545686 PNNQ9H307 717 aaKnown RBP11.03□□□□□ -0.64
TDP1-204ENST00000545686 IPO8O15397 1037 aaKnown RBP11.03□□□□□ -0.64
TDP1-204ENST00000545686 RBM25P49756 843 aaKnown RBP11.03□□□□□ -0.64
TDP1-204ENST00000545686 SSH1Q8WYL5 1049 aa11.03□□□□□ -0.64
TDP1-204ENST00000545686 SNX21Q969T3 373 aa11.03□□□□□ -0.64
TDP1-204ENST00000545686 TRIM35Q9UPQ4 493 aa11.03□□□□□ -0.64
TDP1-204ENST00000545686 LRRC7Q96NW7 1537 aa11.03□□□□□ -0.64
TDP1-204ENST00000545686 PTPRMP28827 1452 aa11.03□□□□□ -0.64
TDP1-204ENST00000545686 MFAP1P55081 439 aaKnown RBP11.02□□□□□ -0.64
TDP1-204ENST00000545686 ALDH1L2Q3SY69 923 aa11.02□□□□□ -0.64
TDP1-204ENST00000545686 ITPRIPQ8IWB1 547 aa11.02□□□□□ -0.64
TDP1-204ENST00000545686 TSR2Q969E8 191 aaKnown RBP11.02□□□□□ -0.64
TDP1-204ENST00000545686 ZNF428Q96B54 188 aa11.02□□□□□ -0.64
TDP1-204ENST00000545686 ZBTB40Q9NUA8 1239 aa11.02□□□□□ -0.64
TDP1-204ENST00000545686 PREX1Q8TCU6 1659 aa11.02□□□□□ -0.65
TDP1-204ENST00000545686 PNPLA6Q8IY17 1366 aa11.02□□□□□ -0.65
TDP1-204ENST00000545686 TMEM131LA2VDJ0 1609 aa11.01□□□□□ -0.65
TDP1-204ENST00000545686 BRPF1P55201 1214 aaPredicted RBP11.01□□□□□ -0.65
TDP1-204ENST00000545686 CIZ1Q9ULV3 898 aaPredicted RBP11.01□□□□□ -0.65
TDP1-204ENST00000545686 DIP2CQ9Y2E4 1556 aa11.01□□□□□ -0.65
TDP1-204ENST00000545686 CD163L1Q9NR16 1453 aa11.01□□□□□ -0.65
TDP1-204ENST00000545686 XRCC6P12956 609 aaKnown RBP eCLIP11.01□□□□□ -0.65
TDP1-204ENST00000545686 DDIT3P35638 169 aa11.01□□□□□ -0.65
TDP1-204ENST00000545686 NUCB1Q02818 461 aa11.01□□□□□ -0.65
TDP1-204ENST00000545686 ZNF692Q9BU19 519 aaPredicted RBP11.01□□□□□ -0.65
TDP1-204ENST00000545686 TRAK2O60296 914 aa11□□□□□ -0.65
TDP1-204ENST00000545686 MRE11P49959 708 aa11□□□□□ -0.65
TDP1-204ENST00000545686 MAP2P11137 1827 aaKnown RBP11□□□□□ -0.65
TDP1-204ENST00000545686 PTMSP20962 102 aa11□□□□□ -0.65
TDP1-204ENST00000545686 CHMP4BQ9H444 224 aaKnown RBP11□□□□□ -0.65
TDP1-204ENST00000545686 RRAGDQ9NQL2 400 aaPredicted RBP11□□□□□ -0.65
TDP1-204ENST00000545686 NOB1Q9ULX3 412 aaKnown RBP11□□□□□ -0.65
TDP1-204ENST00000545686 PIK3R4Q99570 1358 aa11□□□□□ -0.65
TDP1-204ENST00000545686 DLG5Q8TDM6 1919 aa10.99□□□□□ -0.65
TDP1-204ENST00000545686 TMEM57Q8N5G2 664 aa10.99□□□□□ -0.65
TDP1-204ENST00000545686 CABP2Q9NPB3 220 aa10.99□□□□□ -0.65
TDP1-204ENST00000545686 TERF2IPQ9NYB0 399 aa10.99□□□□□ -0.65
TDP1-204ENST00000545686 RICTORQ6R327 1708 aa10.99□□□□□ -0.65
TDP1-204ENST00000545686 PTCH1Q13635 1447 aa10.99□□□□□ -0.65
TDP1-204ENST00000545686 FAM135BQ49AJ0 1406 aa10.99□□□□□ -0.65
TDP1-204ENST00000545686 U2SURPO15042 1029 aaKnown RBP10.99□□□□□ -0.65
TDP1-204ENST00000545686 BMP2KLQ5H9B9 411 aa10.99□□□□□ -0.65
TDP1-204ENST00000545686 NEO1Q92859 1461 aa10.99□□□□□ -0.65
TDP1-204ENST00000545686 CLCN1P35523 988 aa10.97□□□□□ -0.65
TDP1-204ENST00000545686 RIPK4P57078 832 aa10.97□□□□□ -0.65
TDP1-204ENST00000545686 GGT6Q6P531 493 aa10.97□□□□□ -0.65
TDP1-204ENST00000545686 UBE2Q2Q8WVN8 375 aa10.97□□□□□ -0.65
TDP1-204ENST00000545686 DIAPH1O60610 1272 aaKnown RBP10.97□□□□□ -0.65
TDP1-204ENST00000545686 EIF5BO60841 1220 aaKnown RBP10.97□□□□□ -0.65
TDP1-204ENST00000545686 CHD1LQ86WJ1 897 aa10.97□□□□□ -0.65
TDP1-204ENST00000545686 GCC1Q96CN9 775 aa10.97□□□□□ -0.65
TDP1-204ENST00000545686 ATP7BP35670 1465 aa10.96□□□□□ -0.65
TDP1-204ENST00000545686 FYB1O15117 783 aa10.96□□□□□ -0.65
TDP1-204ENST00000545686 FCHSD2O94868 740 aa10.96□□□□□ -0.65
TDP1-204ENST00000545686 SPRYD3Q8NCJ5 442 aa10.96□□□□□ -0.65
TDP1-204ENST00000545686 ARHGAP45Q92619 1136 aa10.96□□□□□ -0.65
TDP1-204ENST00000545686 GBP4Q96PP9 640 aa10.96□□□□□ -0.65
TDP1-204ENST00000545686 SRPK2P78362 688 aaKnown RBP10.96□□□□□ -0.66
TDP1-204ENST00000545686 SKOR2Q2VWA4 1001 aaPredicted RBP10.96□□□□□ -0.66
TDP1-204ENST00000545686 GGNBP2Q9H3C7 697 aa10.96□□□□□ -0.66
TDP1-204ENST00000545686 YTHDC2Q9H6S0 1430 aaKnown RBP10.96□□□□□ -0.66
TDP1-204ENST00000545686 ARHGEF40Q8TER5 1519 aa10.95□□□□□ -0.66
TDP1-204ENST00000545686 DLC1Q96QB1 1528 aa10.95□□□□□ -0.66
TDP1-204ENST00000545686 SLC52A1Q9NWF4 448 aa10.95□□□□□ -0.66
TDP1-204ENST00000545686 CALD1Q05682 793 aaKnown RBP10.95□□□□□ -0.66
TDP1-204ENST00000545686 GRPEL1Q9HAV7 217 aa10.95□□□□□ -0.66
TDP1-204ENST00000545686 ALKQ9UM73 1620 aa10.95□□□□□ -0.66
TDP1-204ENST00000545686 RAB3GAP1Q15042 981 aa10.94□□□□□ -0.66
TDP1-204ENST00000545686 HDGFL2Q7Z4V5 671 aaPredicted RBP10.94□□□□□ -0.66
TDP1-204ENST00000545686 GZF1Q9H116 711 aaPredicted RBP10.94□□□□□ -0.66
TDP1-204ENST00000545686 SETD1AO15047 1707 aaKnown RBP10.94□□□□□ -0.66
TDP1-204ENST00000545686 PANK2Q9BZ23 570 aa10.94□□□□□ -0.66
TDP1-204ENST00000545686 LNPKQ9C0E8 428 aa10.94□□□□□ -0.66
TDP1-204ENST00000545686 HSP90AB1P08238 724 aaKnown RBP10.93□□□□□ -0.66
TDP1-204ENST00000545686 CFAP44Q96MT7 982 aa10.93□□□□□ -0.66
TDP1-204ENST00000545686 KIF24Q5T7B8 1368 aa10.93□□□□□ -0.66
TDP1-204ENST00000545686 YEATS2Q9ULM3 1422 aa10.93□□□□□ -0.66
TDP1-204ENST00000545686 TNPO1Q92973 898 aaKnown RBP10.93□□□□□ -0.66
TDP1-204ENST00000545686 KNDC1Q76NI1 1749 aa10.92□□□□□ -0.66
TDP1-204ENST00000545686 CDK12Q9NYV4 1490 aaPredicted RBP10.92□□□□□ -0.66
TDP1-204ENST00000545686 RIMBP3CA6NJZ7 1639 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms