RNA–Protein interactions for RNA: ENST00000545584.1

CHD4-213, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-213ENST00000545584 PLCH1Q4KWH8 1693 aa28.51■■■□□ 2.15
CHD4-213ENST00000545584 ACEP12821 1306 aa28.5■■■□□ 2.15
CHD4-213ENST00000545584 PLEKHG3A1L390 1219 aa28.5■■■□□ 2.15
CHD4-213ENST00000545584 POLR3AO14802 1390 aaPredicted RBP28.5■■■□□ 2.15
CHD4-213ENST00000545584 NBPF8Q3BBV2 869 aa28.49■■■□□ 2.15
CHD4-213ENST00000545584 GLI3P10071 1580 aa28.49■■■□□ 2.15
CHD4-213ENST00000545584 TOPAZ1Q8N9V7 1692 aa28.48■■■□□ 2.15
CHD4-213ENST00000545584 ROCK2O75116 1388 aaKnown RBP28.47■■■□□ 2.15
CHD4-213ENST00000545584 BTG4Q9NY30 223 aa28.46■■■□□ 2.15
CHD4-213ENST00000545584 TRPM1Q7Z4N2 1603 aa28.46■■■□□ 2.15
CHD4-213ENST00000545584 QRICH2Q9H0J4 1663 aa28.45■■■□□ 2.15
CHD4-213ENST00000545584 CABP2Q9NPB3 220 aa28.45■■■□□ 2.14
CHD4-213ENST00000545584 PRDM11Q9NQV5 511 aa28.44■■■□□ 2.14
CHD4-213ENST00000545584 COL14A1Q05707 1796 aaKnown RBP28.44■■■□□ 2.14
CHD4-213ENST00000545584 PPIP5K1Q6PFW1 1433 aa28.43■■■□□ 2.14
CHD4-213ENST00000545584 SEPT12Q8IYM1 358 aa28.42■■■□□ 2.14
CHD4-213ENST00000545584 NUTM2GQ5VZR2 741 aa28.41■■■□□ 2.14
CHD4-213ENST00000545584 EVC2Q86UK5 1308 aa28.41■■■□□ 2.14
CHD4-213ENST00000545584 CRYBG1Q9Y4K1 1723 aa28.4■■■□□ 2.14
CHD4-213ENST00000545584 TRIM26Q12899 539 aaPredicted RBP28.4■■■□□ 2.14
CHD4-213ENST00000545584 CCDC125Q86Z20 511 aa28.4■■■□□ 2.14
CHD4-213ENST00000545584 ABTB2Q8N961 1025 aa28.4■■■□□ 2.14
CHD4-213ENST00000545584 A0A0G2JS52 829 aa28.38■■■□□ 2.13
CHD4-213ENST00000545584 ONECUT3O60422 494 aaPredicted RBP28.38■■■□□ 2.13
CHD4-213ENST00000545584 MYT1Q01538 1121 aa28.38■■■□□ 2.13
CHD4-213ENST00000545584 NRAPQ86VF7 1730 aa28.38■■■□□ 2.13
CHD4-213ENST00000545584 CABP1Q9NZU7 370 aa28.36■■■□□ 2.13
CHD4-213ENST00000545584 KIAA0232Q92628 1395 aa28.36■■■□□ 2.13
CHD4-213ENST00000545584 TONSLQ96HA7 1378 aa28.36■■■□□ 2.13
CHD4-213ENST00000545584 ZC3H6P61129 1189 aaKnown RBP28.35■■■□□ 2.13
CHD4-213ENST00000545584 BRD4O60885 1362 aaPredicted RBP28.35■■■□□ 2.13
CHD4-213ENST00000545584 PHRF1Q9P1Y6 1649 aaKnown RBP28.34■■■□□ 2.13
CHD4-213ENST00000545584 NLRP13Q86W25 1043 aa28.34■■■□□ 2.13
CHD4-213ENST00000545584 FAM98CQ17RN3 349 aaKnown RBP28.33■■■□□ 2.13
CHD4-213ENST00000545584 BRWD3Q6RI45 1802 aa28.33■■■□□ 2.13
CHD4-213ENST00000545584 CHRNA2Q15822 529 aa28.32■■■□□ 2.12
CHD4-213ENST00000545584 KRT27Q7Z3Y8 459 aa28.32■■■□□ 2.12
CHD4-213ENST00000545584 SPATA31A5Q5VU36 1347 aa28.3■■■□□ 2.12
CHD4-213ENST00000545584 SPATA31A7Q8IWB4 1347 aa28.3■■■□□ 2.12
CHD4-213ENST00000545584 CARD11Q9BXL7 1154 aa28.29■■■□□ 2.12
CHD4-213ENST00000545584 USP6P35125 1406 aa28.28■■■□□ 2.12
CHD4-213ENST00000545584 BLMP54132 1417 aaPredicted RBP28.28■■■□□ 2.12
CHD4-213ENST00000545584 STRN4Q9NRL3 753 aa28.28■■■□□ 2.12
CHD4-213ENST00000545584 USP19O94966 1318 aa28.27■■■□□ 2.12
CHD4-213ENST00000545584 SF3B2Q13435 895 aaKnown RBP28.27■■■□□ 2.12
CHD4-213ENST00000545584 EVA1CP58658 441 aa28.26■■■□□ 2.11
CHD4-213ENST00000545584 NRKQ7Z2Y5 1582 aa28.25■■■□□ 2.11
CHD4-213ENST00000545584 ZNF692Q9BU19 519 aaPredicted RBP28.25■■■□□ 2.11
CHD4-213ENST00000545584 GCP02774 474 aa28.24■■■□□ 2.11
CHD4-213ENST00000545584 NLRP6P59044 892 aa28.24■■■□□ 2.11
CHD4-213ENST00000545584 CPDO75976 1380 aa28.24■■■□□ 2.11
CHD4-213ENST00000545584 EP400Q96L91 3159 aa28.23■■■□□ 2.11
CHD4-213ENST00000545584 SPATA31A1Q5TZJ5 1347 aa28.22■■■□□ 2.11
CHD4-213ENST00000545584 SBNO2Q9Y2G9 1366 aa28.21■■■□□ 2.11
CHD4-213ENST00000545584 ZRANB1Q9UGI0 708 aa28.2■■■□□ 2.1
CHD4-213ENST00000545584 SSH2Q76I76 1423 aa28.18■■■□□ 2.1
CHD4-213ENST00000545584 USP35Q9P2H5 1018 aa28.17■■■□□ 2.1
CHD4-213ENST00000545584 CAMTA1Q9Y6Y1 1673 aa28.16■■■□□ 2.1
CHD4-213ENST00000545584 ZBTB7CA1YPR0 619 aa28.16■■■□□ 2.1
CHD4-213ENST00000545584 TTC21BQ7Z4L5 1316 aa28.16■■■□□ 2.1
CHD4-213ENST00000545584 THSD7AQ9UPZ6 1657 aa28.15■■■□□ 2.1
CHD4-213ENST00000545584 LARP1Q6PKG0 1096 aaKnown RBP28.14■■■□□ 2.1
CHD4-213ENST00000545584 DEFB132Q7Z7B7 95 aa28.14■■■□□ 2.1
CHD4-213ENST00000545584 TTC21AQ8NDW8 1320 aa28.14■■■□□ 2.09
CHD4-213ENST00000545584 LMO7Q8WWI1 1683 aa28.13■■■□□ 2.09
CHD4-213ENST00000545584 KTN1Q86UP2 1357 aaKnown RBP28.13■■■□□ 2.09
CHD4-213ENST00000545584 AKAP12Q02952 1782 aa28.13■■■□□ 2.09
CHD4-213ENST00000545584 SLIT3O75094 1523 aa28.13■■■□□ 2.09
CHD4-213ENST00000545584 BARGINQ6ZT62 677 aa28.12■■■□□ 2.09
CHD4-213ENST00000545584 CPSF1Q10570 1443 aaKnown RBP28.11■■■□□ 2.09
CHD4-213ENST00000545584 PIK3C2AO00443 1686 aa28.11■■■□□ 2.09
CHD4-213ENST00000545584 BAG6P46379 1132 aa28.11■■■□□ 2.09
CHD4-213ENST00000545584 TCP11L2Q8N4U5 519 aa28.11■■■□□ 2.09
CHD4-213ENST00000545584 FAM182BQ5T319 152 aa28.1■■■□□ 2.09
CHD4-213ENST00000545584 KCNH5Q8NCM2 988 aa28.1■■■□□ 2.09
CHD4-213ENST00000545584 TMC1Q8TDI8 760 aa28.1■■■□□ 2.09
CHD4-213ENST00000545584 AATKQ6ZMQ8 1374 aa28.1■■■□□ 2.09
CHD4-213ENST00000545584 THRAP3Q9Y2W1 955 aaKnown RBP28.09■■■□□ 2.09
CHD4-213ENST00000545584 COL5A2P05997 1499 aaPredicted RBP28.08■■■□□ 2.09
CHD4-213ENST00000545584 PDE3BQ13370 1112 aa28.07■■■□□ 2.08
CHD4-213ENST00000545584 HDGFL2Q7Z4V5 671 aaPredicted RBP28.06■■■□□ 2.08
CHD4-213ENST00000545584 SLC24A1O60721 1099 aa28.05■■■□□ 2.08
CHD4-213ENST00000545584 FAM196AQ6ZSG2 479 aa28.05■■■□□ 2.08
CHD4-213ENST00000545584 CRB1P82279 1406 aa28.04■■■□□ 2.08
CHD4-213ENST00000545584 SOX12O15370 315 aa28.04■■■□□ 2.08
CHD4-213ENST00000545584 PUS7Q96PZ0 661 aaKnown RBP28.04■■■□□ 2.08
CHD4-213ENST00000545584 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.03■■■□□ 2.08
CHD4-213ENST00000545584 RGPD1P0DJD0 1748 aa28.03■■■□□ 2.08
CHD4-213ENST00000545584 MON2Q7Z3U7 1717 aa28.03■■■□□ 2.08
CHD4-213ENST00000545584 ARHGEF25Q86VW2 580 aa28.02■■■□□ 2.08
CHD4-213ENST00000545584 SLC12A5Q9H2X9 1139 aa28.02■■■□□ 2.08
CHD4-213ENST00000545584 TERF2IPQ9NYB0 399 aa28.02■■■□□ 2.08
CHD4-213ENST00000545584 ST20-MTHFSA0A0A6YYL1 179 aa28.01■■■□□ 2.07
CHD4-213ENST00000545584 TOM1L2Q6ZVM7 507 aa28.01■■■□□ 2.07
CHD4-213ENST00000545584 CD163L1Q9NR16 1453 aa27.98■■■□□ 2.07
CHD4-213ENST00000545584 WDR17Q8IZU2 1322 aa27.97■■■□□ 2.07
CHD4-213ENST00000545584 COL18A1P39060 1754 aa27.97■■■□□ 2.07
CHD4-213ENST00000545584 TRIM37O94972 964 aa27.97■■■□□ 2.07
CHD4-213ENST00000545584 EN1Q05925 392 aaPredicted RBP27.97■■■□□ 2.07
CHD4-213ENST00000545584 TESK2Q96S53 571 aa27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms