RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 TRPM3Q9HCF6 1732 aaPredicted RBP22.2■■□□□ 1.14
CCDC78-216ENST00000544996 SLC24A1O60721 1099 aa22.19■■□□□ 1.14
CCDC78-216ENST00000544996 TRPC5Q9UL62 973 aaPredicted RBP22.19■■□□□ 1.14
CCDC78-216ENST00000544996 ATAD2Q6PL18 1390 aa22.19■■□□□ 1.14
CCDC78-216ENST00000544996 RBM6P78332 1123 aaKnown RBP22.18■■□□□ 1.14
CCDC78-216ENST00000544996 BRD4O60885 1362 aaPredicted RBP22.16■■□□□ 1.14
CCDC78-216ENST00000544996 ST20-MTHFSA0A0A6YYL1 179 aa22.16■■□□□ 1.14
CCDC78-216ENST00000544996 ABTB2Q8N961 1025 aa22.16■■□□□ 1.14
CCDC78-216ENST00000544996 ALS2Q96Q42 1657 aa22.16■■□□□ 1.14
CCDC78-216ENST00000544996 ZNF692Q9BU19 519 aaPredicted RBP22.15■■□□□ 1.14
CCDC78-216ENST00000544996 NUTM2GQ5VZR2 741 aa22.14■■□□□ 1.13
CCDC78-216ENST00000544996 UNC5CLQ8IV45 518 aa22.14■■□□□ 1.13
CCDC78-216ENST00000544996 BCL9LQ86UU0 1499 aa22.14■■□□□ 1.13
CCDC78-216ENST00000544996 MARF1Q9Y4F3 1742 aaKnown RBP22.13■■□□□ 1.13
CCDC78-216ENST00000544996 CDK12Q9NYV4 1490 aaPredicted RBP22.12■■□□□ 1.13
CCDC78-216ENST00000544996 USP6P35125 1406 aa22.12■■□□□ 1.13
CCDC78-216ENST00000544996 USP47Q96K76 1375 aa22.12■■□□□ 1.13
CCDC78-216ENST00000544996 SLIT2O94813 1529 aa22.11■■□□□ 1.13
CCDC78-216ENST00000544996 FAM83GA6ND36 823 aa22.11■■□□□ 1.13
CCDC78-216ENST00000544996 NLRP13Q86W25 1043 aa22.11■■□□□ 1.13
CCDC78-216ENST00000544996 PUS7Q96PZ0 661 aaKnown RBP22.11■■□□□ 1.13
CCDC78-216ENST00000544996 TESK2Q96S53 571 aa22.11■■□□□ 1.13
CCDC78-216ENST00000544996 ATRNO75882 1429 aa22.11■■□□□ 1.13
CCDC78-216ENST00000544996 TMC1Q8TDI8 760 aa22.1■■□□□ 1.13
CCDC78-216ENST00000544996 PRDM11Q9NQV5 511 aa22.09■■□□□ 1.13
CCDC78-216ENST00000544996 ABCA3Q99758 1704 aa22.09■■□□□ 1.13
CCDC78-216ENST00000544996 GJD4Q96KN9 370 aaPredicted RBP22.08■■□□□ 1.13
CCDC78-216ENST00000544996 NLRP6P59044 892 aa22.06■■□□□ 1.12
CCDC78-216ENST00000544996 BTG4Q9NY30 223 aa22.06■■□□□ 1.12
CCDC78-216ENST00000544996 KTN1Q86UP2 1357 aaKnown RBP22.06■■□□□ 1.12
CCDC78-216ENST00000544996 CPSF1Q10570 1443 aaKnown RBP22.06■■□□□ 1.12
CCDC78-216ENST00000544996 TMF1P82094 1093 aa22.05■■□□□ 1.12
CCDC78-216ENST00000544996 HDGFL2Q7Z4V5 671 aaPredicted RBP22.05■■□□□ 1.12
CCDC78-216ENST00000544996 TERF2IPQ9NYB0 399 aa22.05■■□□□ 1.12
CCDC78-216ENST00000544996 SSH2Q76I76 1423 aa22.05■■□□□ 1.12
CCDC78-216ENST00000544996 USP19O94966 1318 aa22.05■■□□□ 1.12
CCDC78-216ENST00000544996 TTC21BQ7Z4L5 1316 aa22.05■■□□□ 1.12
CCDC78-216ENST00000544996 ZC3H6P61129 1189 aaKnown RBP22.04■■□□□ 1.12
CCDC78-216ENST00000544996 VPS72Q15906 364 aa22.04■■□□□ 1.12
CCDC78-216ENST00000544996 SLC12A5Q9H2X9 1139 aa22.04■■□□□ 1.12
CCDC78-216ENST00000544996 CCDC9Q9Y3X0 531 aaKnown RBP22.04■■□□□ 1.12
CCDC78-216ENST00000544996 TTC21AQ8NDW8 1320 aa22.04■■□□□ 1.12
CCDC78-216ENST00000544996 KIAA0232Q92628 1395 aa22.03■■□□□ 1.12
CCDC78-216ENST00000544996 GCP02774 474 aa22.03■■□□□ 1.12
CCDC78-216ENST00000544996 RGS12O14924 1447 aa22.03■■□□□ 1.12
CCDC78-216ENST00000544996 CDCA8Q53HL2 280 aa22.02■■□□□ 1.12
CCDC78-216ENST00000544996 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.02■■□□□ 1.12
CCDC78-216ENST00000544996 NINLQ9Y2I6 1382 aa22.01■■□□□ 1.11
CCDC78-216ENST00000544996 CRYBG1Q9Y4K1 1723 aa22.01■■□□□ 1.11
CCDC78-216ENST00000544996 COL14A1Q05707 1796 aaKnown RBP22.01■■□□□ 1.11
CCDC78-216ENST00000544996 NWD2Q9ULI1 1742 aa22■■□□□ 1.11
CCDC78-216ENST00000544996 CHRNA2Q15822 529 aa22■■□□□ 1.11
CCDC78-216ENST00000544996 PLCH1Q4KWH8 1693 aa22■■□□□ 1.11
CCDC78-216ENST00000544996 CPDO75976 1380 aa21.99■■□□□ 1.11
CCDC78-216ENST00000544996 PHRF1Q9P1Y6 1649 aaKnown RBP21.98■■□□□ 1.11
CCDC78-216ENST00000544996 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.98■■□□□ 1.11
CCDC78-216ENST00000544996 AKAP12Q02952 1782 aa21.97■■□□□ 1.11
CCDC78-216ENST00000544996 CD163L1Q9NR16 1453 aa21.96■■□□□ 1.11
CCDC78-216ENST00000544996 EVA1CP58658 441 aa21.96■■□□□ 1.11
CCDC78-216ENST00000544996 KCNH5Q8NCM2 988 aa21.96■■□□□ 1.11
CCDC78-216ENST00000544996 NRKQ7Z2Y5 1582 aa21.95■■□□□ 1.11
CCDC78-216ENST00000544996 EIF4G2P78344 907 aaKnown RBP eCLIP21.95■■□□□ 1.1
CCDC78-216ENST00000544996 A0A1W2PP64 1363 aa21.95■■□□□ 1.1
CCDC78-216ENST00000544996 ZBTB7CA1YPR0 619 aa21.94■■□□□ 1.1
CCDC78-216ENST00000544996 STRN4Q9NRL3 753 aa21.94■■□□□ 1.1
CCDC78-216ENST00000544996 EDC4Q6P2E9 1401 aaKnown RBP21.94■■□□□ 1.1
CCDC78-216ENST00000544996 PIK3C2AO00443 1686 aa21.93■■□□□ 1.1
CCDC78-216ENST00000544996 GLI3P10071 1580 aa21.93■■□□□ 1.1
CCDC78-216ENST00000544996 SLIT3O75094 1523 aa21.92■■□□□ 1.1
CCDC78-216ENST00000544996 ONECUT3O60422 494 aaPredicted RBP21.92■■□□□ 1.1
CCDC78-216ENST00000544996 SEPT12Q8IYM1 358 aa21.92■■□□□ 1.1
CCDC78-216ENST00000544996 UPF1Q92900 1129 aaKnown RBP eCLIP21.92■■□□□ 1.1
CCDC78-216ENST00000544996 MON2Q7Z3U7 1717 aa21.92■■□□□ 1.1
CCDC78-216ENST00000544996 SPATA31A5Q5VU36 1347 aa21.91■■□□□ 1.1
CCDC78-216ENST00000544996 SPATA31A7Q8IWB4 1347 aa21.91■■□□□ 1.1
CCDC78-216ENST00000544996 A0A0G2JS52 829 aa21.91■■□□□ 1.1
CCDC78-216ENST00000544996 MYT1Q01538 1121 aa21.91■■□□□ 1.1
CCDC78-216ENST00000544996 NME9Q86XW9 330 aa21.91■■□□□ 1.1
CCDC78-216ENST00000544996 NRAPQ86VF7 1730 aa21.91■■□□□ 1.1
CCDC78-216ENST00000544996 USP31Q70CQ4 1352 aa21.9■■□□□ 1.1
CCDC78-216ENST00000544996 SOX12O15370 315 aa21.9■■□□□ 1.1
CCDC78-216ENST00000544996 ANKRD36BQ8N2N9 1353 aa21.89■■□□□ 1.1
CCDC78-216ENST00000544996 FAM98CQ17RN3 349 aaKnown RBP21.89■■□□□ 1.09
CCDC78-216ENST00000544996 AATKQ6ZMQ8 1374 aa21.88■■□□□ 1.09
CCDC78-216ENST00000544996 ZRANB1Q9UGI0 708 aa21.88■■□□□ 1.09
CCDC78-216ENST00000544996 SPATA31A1Q5TZJ5 1347 aa21.87■■□□□ 1.09
CCDC78-216ENST00000544996 HSPA5P11021 654 aaKnown RBP21.87■■□□□ 1.09
CCDC78-216ENST00000544996 ARHGEF25Q86VW2 580 aa21.87■■□□□ 1.09
CCDC78-216ENST00000544996 CAMTA1Q9Y6Y1 1673 aa21.87■■□□□ 1.09
CCDC78-216ENST00000544996 LARP1Q6PKG0 1096 aaKnown RBP21.85■■□□□ 1.09
CCDC78-216ENST00000544996 USP35Q9P2H5 1018 aa21.85■■□□□ 1.09
CCDC78-216ENST00000544996 KRT27Q7Z3Y8 459 aa21.84■■□□□ 1.09
CCDC78-216ENST00000544996 LMO7Q8WWI1 1683 aa21.83■■□□□ 1.09
CCDC78-216ENST00000544996 COG3Q96JB2 828 aa21.83■■□□□ 1.09
CCDC78-216ENST00000544996 POLR3GLQ9BT43 218 aa21.83■■□□□ 1.09
CCDC78-216ENST00000544996 COL5A2P05997 1499 aaPredicted RBP21.83■■□□□ 1.08
CCDC78-216ENST00000544996 TCP11L2Q8N4U5 519 aa21.82■■□□□ 1.08
CCDC78-216ENST00000544996 NFAT5O94916 1531 aa21.8■■□□□ 1.08
CCDC78-216ENST00000544996 BARGINQ6ZT62 677 aa21.8■■□□□ 1.08
CCDC78-216ENST00000544996 AXIN2Q9Y2T1 843 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms