RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 SLIT2O94813 1529 aa16.22■□□□□ 0.19
YBX3-216ENST00000544622 MARF1Q9Y4F3 1742 aaKnown RBP16.22■□□□□ 0.19
YBX3-216ENST00000544622 SSH2Q76I76 1423 aa16.2■□□□□ 0.18
YBX3-216ENST00000544622 PAK3O75914 559 aaPredicted RBP16.2■□□□□ 0.18
YBX3-216ENST00000544622 PUS7Q96PZ0 661 aaKnown RBP16.2■□□□□ 0.18
YBX3-216ENST00000544622 BRD4O60885 1362 aaPredicted RBP16.2■□□□□ 0.18
YBX3-216ENST00000544622 CDK12Q9NYV4 1490 aaPredicted RBP16.2■□□□□ 0.18
YBX3-216ENST00000544622 ST20-MTHFSA0A0A6YYL1 179 aa16.19■□□□□ 0.18
YBX3-216ENST00000544622 FAM83GA6ND36 823 aa16.19■□□□□ 0.18
YBX3-216ENST00000544622 RBM6P78332 1123 aaKnown RBP16.19■□□□□ 0.18
YBX3-216ENST00000544622 TRPC5Q9UL62 973 aaPredicted RBP16.19■□□□□ 0.18
YBX3-216ENST00000544622 ABCA3Q99758 1704 aa16.19■□□□□ 0.18
YBX3-216ENST00000544622 ATRNO75882 1429 aa16.19■□□□□ 0.18
YBX3-216ENST00000544622 ATAD2Q6PL18 1390 aa16.18■□□□□ 0.18
YBX3-216ENST00000544622 CCER1Q8TC90 406 aaPredicted RBP16.18■□□□□ 0.18
YBX3-216ENST00000544622 CRYBG1Q9Y4K1 1723 aa16.18■□□□□ 0.18
YBX3-216ENST00000544622 UNC5CLQ8IV45 518 aa16.17■□□□□ 0.18
YBX3-216ENST00000544622 ZNF692Q9BU19 519 aaPredicted RBP16.17■□□□□ 0.18
YBX3-216ENST00000544622 USP6P35125 1406 aa16.17■□□□□ 0.18
YBX3-216ENST00000544622 CPSF1Q10570 1443 aaKnown RBP16.17■□□□□ 0.18
YBX3-216ENST00000544622 SLC24A1O60721 1099 aa16.15■□□□□ 0.18
YBX3-216ENST00000544622 HAP1P54257 671 aaPredicted RBP16.15■□□□□ 0.18
YBX3-216ENST00000544622 ABTB2Q8N961 1025 aa16.15■□□□□ 0.18
YBX3-216ENST00000544622 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.14■□□□□ 0.17
YBX3-216ENST00000544622 CD163L1Q9NR16 1453 aa16.14■□□□□ 0.17
YBX3-216ENST00000544622 USP19O94966 1318 aa16.14■□□□□ 0.17
YBX3-216ENST00000544622 PLEKHG5O94827 1062 aa16.13■□□□□ 0.17
YBX3-216ENST00000544622 NUTM2GQ5VZR2 741 aa16.13■□□□□ 0.17
YBX3-216ENST00000544622 GJD4Q96KN9 370 aaPredicted RBP16.13■□□□□ 0.17
YBX3-216ENST00000544622 USP47Q96K76 1375 aa16.13■□□□□ 0.17
YBX3-216ENST00000544622 RGS12O14924 1447 aa16.12■□□□□ 0.17
YBX3-216ENST00000544622 NWD2Q9ULI1 1742 aa16.11■□□□□ 0.17
YBX3-216ENST00000544622 VPS72Q15906 364 aa16.11■□□□□ 0.17
YBX3-216ENST00000544622 NLRP13Q86W25 1043 aa16.11■□□□□ 0.17
YBX3-216ENST00000544622 SLC12A5Q9H2X9 1139 aa16.11■□□□□ 0.17
YBX3-216ENST00000544622 TTC21BQ7Z4L5 1316 aa16.11■□□□□ 0.17
YBX3-216ENST00000544622 PHRF1Q9P1Y6 1649 aaKnown RBP16.1■□□□□ 0.17
YBX3-216ENST00000544622 ONECUT3O60422 494 aaPredicted RBP16.1■□□□□ 0.17
YBX3-216ENST00000544622 GCP02774 474 aa16.1■□□□□ 0.17
YBX3-216ENST00000544622 BTG4Q9NY30 223 aa16.1■□□□□ 0.17
YBX3-216ENST00000544622 KIAA0232Q92628 1395 aa16.1■□□□□ 0.17
YBX3-216ENST00000544622 AKAP12Q02952 1782 aa16.1■□□□□ 0.17
YBX3-216ENST00000544622 PLCH1Q4KWH8 1693 aa16.09■□□□□ 0.17
YBX3-216ENST00000544622 COL14A1Q05707 1796 aaKnown RBP16.09■□□□□ 0.17
YBX3-216ENST00000544622 CPDO75976 1380 aa16.09■□□□□ 0.17
YBX3-216ENST00000544622 GLI3P10071 1580 aa16.09■□□□□ 0.17
YBX3-216ENST00000544622 NLRP6P59044 892 aa16.08■□□□□ 0.16
YBX3-216ENST00000544622 ZC3H6P61129 1189 aaKnown RBP16.08■□□□□ 0.16
YBX3-216ENST00000544622 TTC21AQ8NDW8 1320 aa16.08■□□□□ 0.16
YBX3-216ENST00000544622 KTN1Q86UP2 1357 aaKnown RBP16.08■□□□□ 0.16
YBX3-216ENST00000544622 NRKQ7Z2Y5 1582 aa16.08■□□□□ 0.16
YBX3-216ENST00000544622 EP400Q96L91 3159 aa16.08■□□□□ 0.16
YBX3-216ENST00000544622 PRDM11Q9NQV5 511 aa16.07■□□□□ 0.16
YBX3-216ENST00000544622 SLIT3O75094 1523 aa16.07■□□□□ 0.16
YBX3-216ENST00000544622 PIK3C2AO00443 1686 aa16.07■□□□□ 0.16
YBX3-216ENST00000544622 NRAPQ86VF7 1730 aa16.07■□□□□ 0.16
YBX3-216ENST00000544622 NINLQ9Y2I6 1382 aa16.06■□□□□ 0.16
YBX3-216ENST00000544622 TMF1P82094 1093 aa16.06■□□□□ 0.16
YBX3-216ENST00000544622 TMC1Q8TDI8 760 aa16.06■□□□□ 0.16
YBX3-216ENST00000544622 MON2Q7Z3U7 1717 aa16.05■□□□□ 0.16
YBX3-216ENST00000544622 A0A1W2PP64 1363 aa16.05■□□□□ 0.16
YBX3-216ENST00000544622 CHRNA2Q15822 529 aa16.05■□□□□ 0.16
YBX3-216ENST00000544622 UPF1Q92900 1129 aaKnown RBP eCLIP16.05■□□□□ 0.16
YBX3-216ENST00000544622 USP31Q70CQ4 1352 aa16.04■□□□□ 0.16
YBX3-216ENST00000544622 HDGFL2Q7Z4V5 671 aaPredicted RBP16.03■□□□□ 0.16
YBX3-216ENST00000544622 TERF2IPQ9NYB0 399 aa16.03■□□□□ 0.16
YBX3-216ENST00000544622 EDC4Q6P2E9 1401 aaKnown RBP16.02■□□□□ 0.16
YBX3-216ENST00000544622 LMO7Q8WWI1 1683 aa16.02■□□□□ 0.16
YBX3-216ENST00000544622 CAMTA1Q9Y6Y1 1673 aa16.02■□□□□ 0.16
YBX3-216ENST00000544622 SPATA31A5Q5VU36 1347 aa16.02■□□□□ 0.16
YBX3-216ENST00000544622 SPATA31A7Q8IWB4 1347 aa16.02■□□□□ 0.16
YBX3-216ENST00000544622 ARHGEF25Q86VW2 580 aa16.01■□□□□ 0.15
YBX3-216ENST00000544622 KCNH5Q8NCM2 988 aa16.01■□□□□ 0.15
YBX3-216ENST00000544622 AATKQ6ZMQ8 1374 aa16■□□□□ 0.15
YBX3-216ENST00000544622 CDCA8Q53HL2 280 aa16■□□□□ 0.15
YBX3-216ENST00000544622 NME9Q86XW9 330 aa16■□□□□ 0.15
YBX3-216ENST00000544622 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16■□□□□ 0.15
YBX3-216ENST00000544622 SEPT12Q8IYM1 358 aa16■□□□□ 0.15
YBX3-216ENST00000544622 ZRANB1Q9UGI0 708 aa16■□□□□ 0.15
YBX3-216ENST00000544622 ANKRD36BQ8N2N9 1353 aa16■□□□□ 0.15
YBX3-216ENST00000544622 SPATA31A1Q5TZJ5 1347 aa15.99■□□□□ 0.15
YBX3-216ENST00000544622 USP54Q70EL1 1684 aa15.99■□□□□ 0.15
YBX3-216ENST00000544622 EIF4G2P78344 907 aaKnown RBP eCLIP15.98■□□□□ 0.15
YBX3-216ENST00000544622 AXIN2Q9Y2T1 843 aa15.98■□□□□ 0.15
YBX3-216ENST00000544622 CCDC9Q9Y3X0 531 aaKnown RBP15.98■□□□□ 0.15
YBX3-216ENST00000544622 NFAT5O94916 1531 aa15.98■□□□□ 0.15
YBX3-216ENST00000544622 COL18A1P39060 1754 aa15.98■□□□□ 0.15
YBX3-216ENST00000544622 HSPA5P11021 654 aaKnown RBP15.97■□□□□ 0.15
YBX3-216ENST00000544622 FAM98CQ17RN3 349 aaKnown RBP15.97■□□□□ 0.15
YBX3-216ENST00000544622 LARP1Q6PKG0 1096 aaKnown RBP15.97■□□□□ 0.15
YBX3-216ENST00000544622 COL5A2P05997 1499 aaPredicted RBP15.97■□□□□ 0.15
YBX3-216ENST00000544622 OVOS2A0A0J9YW53 1432 aa15.96■□□□□ 0.15
YBX3-216ENST00000544622 OVOS2Q6IE36 1432 aa15.96■□□□□ 0.15
YBX3-216ENST00000544622 STRN4Q9NRL3 753 aa15.96■□□□□ 0.15
YBX3-216ENST00000544622 EVA1CP58658 441 aa15.95■□□□□ 0.14
YBX3-216ENST00000544622 BARGINQ6ZT62 677 aa15.95■□□□□ 0.14
YBX3-216ENST00000544622 THSD7AQ9UPZ6 1657 aa15.93■□□□□ 0.14
YBX3-216ENST00000544622 FYB1O15117 783 aa15.93■□□□□ 0.14
YBX3-216ENST00000544622 KRT27Q7Z3Y8 459 aa15.93■□□□□ 0.14
YBX3-216ENST00000544622 CARD14Q9BXL6 1004 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 146.6 ms