RNA–Protein interactions for RNA: ENST00000543356.6

GNE-206, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 1 (best) BASIC

Gene GNE, Length 2,576 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-206ENST00000543356 SMG6Q86US8 1419 aaKnown RBP12.44□□□□□ -0.42
GNE-206ENST00000543356 TNNT2P45379 298 aaPredicted RBP12.43□□□□□ -0.42
GNE-206ENST00000543356 ACEP12821 1306 aa12.43□□□□□ -0.42
GNE-206ENST00000543356 MTHFSP49914 203 aa12.43□□□□□ -0.42
GNE-206ENST00000543356 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.42□□□□□ -0.42
GNE-206ENST00000543356 USP54Q70EL1 1684 aa12.42□□□□□ -0.42
GNE-206ENST00000543356 AATKQ6ZMQ8 1374 aa12.42□□□□□ -0.42
GNE-206ENST00000543356 STRCP1A6NGW2 1772 aa12.41□□□□□ -0.42
GNE-206ENST00000543356 STRCQ7RTU9 1775 aa12.41□□□□□ -0.42
GNE-206ENST00000543356 OVOS2A0A0J9YW53 1432 aa12.41□□□□□ -0.42
GNE-206ENST00000543356 OVOS2Q6IE36 1432 aa12.41□□□□□ -0.42
GNE-206ENST00000543356 TTC21BQ7Z4L5 1316 aa12.41□□□□□ -0.42
GNE-206ENST00000543356 PNPLA6Q8IY17 1366 aa12.41□□□□□ -0.42
GNE-206ENST00000543356 NME9Q86XW9 330 aa12.4□□□□□ -0.42
GNE-206ENST00000543356 LRRC7Q96NW7 1537 aa12.4□□□□□ -0.42
GNE-206ENST00000543356 NUTM2FA1L443 756 aa12.4□□□□□ -0.42
GNE-206ENST00000543356 PDE3BQ13370 1112 aa12.4□□□□□ -0.42
GNE-206ENST00000543356 TTC21AQ8NDW8 1320 aa12.4□□□□□ -0.42
GNE-206ENST00000543356 PIK3C2AO00443 1686 aa12.39□□□□□ -0.43
GNE-206ENST00000543356 MAP2P11137 1827 aaKnown RBP12.39□□□□□ -0.43
GNE-206ENST00000543356 CDK12Q9NYV4 1490 aaPredicted RBP12.39□□□□□ -0.43
GNE-206ENST00000543356 NUDCQ9Y266 331 aa12.39□□□□□ -0.43
GNE-206ENST00000543356 NCOA3Q9Y6Q9 1424 aa12.39□□□□□ -0.43
GNE-206ENST00000543356 COG3Q96JB2 828 aa12.38□□□□□ -0.43
GNE-206ENST00000543356 IQSEC2Q5JU85 1478 aa12.38□□□□□ -0.43
GNE-206ENST00000543356 KIF1AQ12756 1690 aa12.37□□□□□ -0.43
GNE-206ENST00000543356 USP31Q70CQ4 1352 aa12.37□□□□□ -0.43
GNE-206ENST00000543356 HSPA2P54652 639 aa12.37□□□□□ -0.43
GNE-206ENST00000543356 NGEFQ8N5V2 710 aa12.37□□□□□ -0.43
GNE-206ENST00000543356 MARF1Q9Y4F3 1742 aaKnown RBP12.37□□□□□ -0.43
GNE-206ENST00000543356 DCCP43146 1447 aa12.36□□□□□ -0.43
GNE-206ENST00000543356 NGDNQ8NEJ9 315 aaKnown RBP12.36□□□□□ -0.43
GNE-206ENST00000543356 PMFBP1Q8TBY8 1022 aa12.36□□□□□ -0.43
GNE-206ENST00000543356 POLKQ9UBT6 870 aa12.36□□□□□ -0.43
GNE-206ENST00000543356 PROSER2Q86WR7 435 aaPredicted RBP12.35□□□□□ -0.43
GNE-206ENST00000543356 ZRANB1Q9UGI0 708 aa12.35□□□□□ -0.43
GNE-206ENST00000543356 ZNF521Q96K83 1311 aa12.35□□□□□ -0.43
GNE-206ENST00000543356 CCDC146Q8IYE0 955 aa12.34□□□□□ -0.43
GNE-206ENST00000543356 PHF8Q9UPP1 1060 aa12.34□□□□□ -0.43
GNE-206ENST00000543356 SENP3-EIF4A1A0A087X0R7 540 aa12.34□□□□□ -0.43
GNE-206ENST00000543356 RUNDC1Q96C34 613 aa12.34□□□□□ -0.43
GNE-206ENST00000543356 RBM33Q96EV2 1170 aaKnown RBP12.34□□□□□ -0.43
GNE-206ENST00000543356 C14orf37Q86TY3 774 aa12.33□□□□□ -0.43
GNE-206ENST00000543356 DIAPH1O60610 1272 aaKnown RBP12.33□□□□□ -0.44
GNE-206ENST00000543356 NCBP3Q53F19 620 aaKnown RBP12.33□□□□□ -0.44
GNE-206ENST00000543356 XIRP1Q702N8 1843 aaKnown RBP12.33□□□□□ -0.44
GNE-206ENST00000543356 PEAK1Q9H792 1746 aa12.33□□□□□ -0.44
GNE-206ENST00000543356 NEFLP07196 543 aa12.32□□□□□ -0.44
GNE-206ENST00000543356 SALL2Q9Y467 1007 aaPredicted RBP12.32□□□□□ -0.44
GNE-206ENST00000543356 TMEM94Q12767 1356 aa12.32□□□□□ -0.44
GNE-206ENST00000543356 APAF1O14727 1248 aa12.32□□□□□ -0.44
GNE-206ENST00000543356 C19orf44Q9H6X5 657 aa12.32□□□□□ -0.44
GNE-206ENST00000543356 SUPT16HQ9Y5B9 1047 aaKnown RBP12.32□□□□□ -0.44
GNE-206ENST00000543356 U2AF1L5P0DN76 240 aaPredicted RBP12.31□□□□□ -0.44
GNE-206ENST00000543356 U2AF1Q01081 240 aaKnown RBP eCLIP12.31□□□□□ -0.44
GNE-206ENST00000543356 C1orf167Q5SNV9 1468 aa12.31□□□□□ -0.44
GNE-206ENST00000543356 EMILIN1Q9Y6C2 1016 aa12.31□□□□□ -0.44
GNE-206ENST00000543356 TRPM3Q9HCF6 1732 aaPredicted RBP12.31□□□□□ -0.44
GNE-206ENST00000543356 MST1RQ04912 1400 aa12.3□□□□□ -0.44
GNE-206ENST00000543356 FBLN1P23142 703 aa12.29□□□□□ -0.44
GNE-206ENST00000543356 U2SURPO15042 1029 aaKnown RBP12.29□□□□□ -0.44
GNE-206ENST00000543356 RGPD1P0DJD0 1748 aa12.29□□□□□ -0.44
GNE-206ENST00000543356 ESCO1Q5FWF5 840 aa12.29□□□□□ -0.44
GNE-206ENST00000543356 PNNQ9H307 717 aaKnown RBP12.29□□□□□ -0.44
GNE-206ENST00000543356 TSHZ2Q9NRE2 1034 aa12.29□□□□□ -0.44
GNE-206ENST00000543356 RNF123Q5XPI4 1314 aa12.29□□□□□ -0.44
GNE-206ENST00000543356 IL13P35225 146 aa12.28□□□□□ -0.44
GNE-206ENST00000543356 CDCA7LQ96GN5 454 aa12.28□□□□□ -0.44
GNE-206ENST00000543356 PLEKHF1Q96S99 279 aa12.28□□□□□ -0.44
GNE-206ENST00000543356 GOLGA2Q08379 1002 aa12.28□□□□□ -0.44
GNE-206ENST00000543356 FKBP8Q14318 412 aa12.28□□□□□ -0.44
GNE-206ENST00000543356 RRS1Q15050 365 aaKnown RBP12.28□□□□□ -0.44
GNE-206ENST00000543356 CCDC27Q2M243 656 aa12.28□□□□□ -0.44
GNE-206ENST00000543356 PHF23Q9BUL5 403 aaPredicted RBP12.28□□□□□ -0.44
GNE-206ENST00000543356 KIF24Q5T7B8 1368 aa12.28□□□□□ -0.44
GNE-206ENST00000543356 PPM1GO15355 546 aaPredicted RBP12.27□□□□□ -0.44
GNE-206ENST00000543356 TCP11L2Q8N4U5 519 aa12.27□□□□□ -0.44
GNE-206ENST00000543356 PHRF1Q9P1Y6 1649 aaKnown RBP12.27□□□□□ -0.45
GNE-206ENST00000543356 SBNO1A3KN83 1393 aa12.27□□□□□ -0.45
GNE-206ENST00000543356 MSH6P52701 1360 aa12.27□□□□□ -0.45
GNE-206ENST00000543356 FCHSD2O94868 740 aa12.26□□□□□ -0.45
GNE-206ENST00000543356 ATF3P18847 181 aa12.26□□□□□ -0.45
GNE-206ENST00000543356 ANO8Q9HCE9 1232 aaPredicted RBP12.26□□□□□ -0.45
GNE-206ENST00000543356 NFAT5O94916 1531 aa12.26□□□□□ -0.45
GNE-206ENST00000543356 TRMT2AQ8IZ69 625 aaKnown RBP12.26□□□□□ -0.45
GNE-206ENST00000543356 SLIT3O75094 1523 aa12.26□□□□□ -0.45
GNE-206ENST00000543356 ALS2Q96Q42 1657 aa12.26□□□□□ -0.45
GNE-206ENST00000543356 NLRP6P59044 892 aa12.25□□□□□ -0.45
GNE-206ENST00000543356 PSME1Q06323 249 aa12.25□□□□□ -0.45
GNE-206ENST00000543356 SLFN5Q08AF3 891 aa12.25□□□□□ -0.45
GNE-206ENST00000543356 WWC1Q8IX03 1113 aa12.25□□□□□ -0.45
GNE-206ENST00000543356 ORAI2Q96SN7 254 aa12.25□□□□□ -0.45
GNE-206ENST00000543356 RSPH6AQ9H0K4 717 aa12.25□□□□□ -0.45
GNE-206ENST00000543356 FLT4P35916 1363 aa12.25□□□□□ -0.45
GNE-206ENST00000543356 LTN1O94822 1766 aa12.25□□□□□ -0.45
GNE-206ENST00000543356 DUSP27Q5VZP5 1158 aa12.25□□□□□ -0.45
GNE-206ENST00000543356 ERICH6BQ5W0A0 696 aa12.25□□□□□ -0.45
GNE-206ENST00000543356 CADPS2Q86UW7 1296 aa12.25□□□□□ -0.45
GNE-206ENST00000543356 ABTB2Q8N961 1025 aa12.25□□□□□ -0.45
GNE-206ENST00000543356 MAPK8IP3Q9UPT6 1336 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms