RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 UNC5CLQ8IV45 518 aa13.98□□□□□ -0.17
CHFR-219ENST00000541341 PRAM1Q96QH2 718 aa13.98□□□□□ -0.17
CHFR-219ENST00000541341 HIRIP3Q9BW71 556 aaPredicted RBP13.98□□□□□ -0.17
CHFR-219ENST00000541341 ZRANB1Q9UGI0 708 aa13.98□□□□□ -0.17
CHFR-219ENST00000541341 SLIT2O94813 1529 aa13.98□□□□□ -0.17
CHFR-219ENST00000541341 TNS3Q68CZ2 1445 aa13.98□□□□□ -0.17
CHFR-219ENST00000541341 DEFB132Q7Z7B7 95 aa13.97□□□□□ -0.17
CHFR-219ENST00000541341 A0A0G2JS52 829 aa13.96□□□□□ -0.17
CHFR-219ENST00000541341 L3MBTL2Q969R5 705 aa13.96□□□□□ -0.17
CHFR-219ENST00000541341 C14orf93Q9H972 538 aaKnown RBP13.96□□□□□ -0.17
CHFR-219ENST00000541341 ALS2Q96Q42 1657 aa13.95□□□□□ -0.18
CHFR-219ENST00000541341 PSME1Q06323 249 aa13.95□□□□□ -0.18
CHFR-219ENST00000541341 POGKQ9P215 609 aa13.95□□□□□ -0.18
CHFR-219ENST00000541341 KDM2AQ9Y2K7 1162 aa13.95□□□□□ -0.18
CHFR-219ENST00000541341 SEPT12Q8IYM1 358 aa13.94□□□□□ -0.18
CHFR-219ENST00000541341 TRAK1Q9UPV9 953 aa13.94□□□□□ -0.18
CHFR-219ENST00000541341 CRYBG1Q9Y4K1 1723 aa13.94□□□□□ -0.18
CHFR-219ENST00000541341 MINK1Q8N4C8 1332 aaPredicted RBP13.93□□□□□ -0.18
CHFR-219ENST00000541341 ARHGEF28Q8N1W1 1705 aaKnown RBP13.93□□□□□ -0.18
CHFR-219ENST00000541341 KTN1Q86UP2 1357 aaKnown RBP13.93□□□□□ -0.18
CHFR-219ENST00000541341 DCAF11Q8TEB1 546 aa13.92□□□□□ -0.18
CHFR-219ENST00000541341 ITSN1Q15811 1721 aa13.92□□□□□ -0.18
CHFR-219ENST00000541341 ADGRB2O60241 1585 aa13.92□□□□□ -0.18
CHFR-219ENST00000541341 COL14A1Q05707 1796 aaKnown RBP13.91□□□□□ -0.18
CHFR-219ENST00000541341 FAM83GA6ND36 823 aa13.91□□□□□ -0.18
CHFR-219ENST00000541341 FAM182BQ5T319 152 aa13.91□□□□□ -0.18
CHFR-219ENST00000541341 ADGRB1O14514 1584 aa13.91□□□□□ -0.18
CHFR-219ENST00000541341 BLMP54132 1417 aaPredicted RBP13.9□□□□□ -0.18
CHFR-219ENST00000541341 ANP32AP39687 249 aaKnown RBP13.9□□□□□ -0.18
CHFR-219ENST00000541341 ROCK2O75116 1388 aaKnown RBP13.9□□□□□ -0.18
CHFR-219ENST00000541341 DLC1Q96QB1 1528 aa13.9□□□□□ -0.19
CHFR-219ENST00000541341 SBNO1A3KN83 1393 aa13.89□□□□□ -0.19
CHFR-219ENST00000541341 PAK3O75914 559 aaPredicted RBP13.89□□□□□ -0.19
CHFR-219ENST00000541341 SF3B2Q13435 895 aaKnown RBP13.89□□□□□ -0.19
CHFR-219ENST00000541341 VPS72Q15906 364 aa13.89□□□□□ -0.19
CHFR-219ENST00000541341 FAM98CQ17RN3 349 aaKnown RBP13.89□□□□□ -0.19
CHFR-219ENST00000541341 CCDC125Q86Z20 511 aa13.89□□□□□ -0.19
CHFR-219ENST00000541341 RGPD1P0DJD0 1748 aa13.89□□□□□ -0.19
CHFR-219ENST00000541341 PHRF1Q9P1Y6 1649 aaKnown RBP13.89□□□□□ -0.19
CHFR-219ENST00000541341 PRR36Q9H6K5 1346 aa13.89□□□□□ -0.19
CHFR-219ENST00000541341 PSDA5PKW4 1024 aaPredicted RBP13.88□□□□□ -0.19
CHFR-219ENST00000541341 KRT27Q7Z3Y8 459 aa13.88□□□□□ -0.19
CHFR-219ENST00000541341 SIRT1Q96EB6 747 aa13.88□□□□□ -0.19
CHFR-219ENST00000541341 BTG4Q9NY30 223 aa13.88□□□□□ -0.19
CHFR-219ENST00000541341 SMG6Q86US8 1419 aaKnown RBP13.88□□□□□ -0.19
CHFR-219ENST00000541341 TNS1Q9HBL0 1735 aaKnown RBP13.87□□□□□ -0.19
CHFR-219ENST00000541341 ARHGEF10O15013 1369 aa13.87□□□□□ -0.19
CHFR-219ENST00000541341 GPRASP1Q5JY77 1395 aa13.86□□□□□ -0.19
CHFR-219ENST00000541341 CCDC7Q96M83 1385 aa13.86□□□□□ -0.19
CHFR-219ENST00000541341 TULP4Q9NRJ4 1543 aa13.86□□□□□ -0.19
CHFR-219ENST00000541341 HSPA5P11021 654 aaKnown RBP13.86□□□□□ -0.19
CHFR-219ENST00000541341 RTL5Q5HYW3 569 aaPredicted RBP13.86□□□□□ -0.19
CHFR-219ENST00000541341 NUTM2GQ5VZR2 741 aa13.86□□□□□ -0.19
CHFR-219ENST00000541341 PRKRIP1Q9H875 184 aaPredicted RBP13.86□□□□□ -0.19
CHFR-219ENST00000541341 NOP58Q9Y2X3 529 aaKnown RBP13.86□□□□□ -0.19
CHFR-219ENST00000541341 ANKARQ7Z5J8 1434 aa13.85□□□□□ -0.19
CHFR-219ENST00000541341 NBPF8Q3BBV2 869 aa13.85□□□□□ -0.19
CHFR-219ENST00000541341 NGDNQ8NEJ9 315 aaKnown RBP13.85□□□□□ -0.19
CHFR-219ENST00000541341 WASHC2AQ641Q2 1341 aa13.85□□□□□ -0.19
CHFR-219ENST00000541341 USP35Q9P2H5 1018 aa13.84□□□□□ -0.19
CHFR-219ENST00000541341 MRS2Q9HD23 443 aa13.83□□□□□ -0.2
CHFR-219ENST00000541341 TOPAZ1Q8N9V7 1692 aa13.82□□□□□ -0.2
CHFR-219ENST00000541341 THSD7AQ9UPZ6 1657 aa13.82□□□□□ -0.2
CHFR-219ENST00000541341 WASLO00401 505 aaPredicted RBP13.82□□□□□ -0.2
CHFR-219ENST00000541341 MSH5O43196 834 aa13.82□□□□□ -0.2
CHFR-219ENST00000541341 EN1Q05925 392 aaPredicted RBP13.82□□□□□ -0.2
CHFR-219ENST00000541341 CHRNA2Q15822 529 aa13.82□□□□□ -0.2
CHFR-219ENST00000541341 LRP5O75197 1615 aa13.82□□□□□ -0.2
CHFR-219ENST00000541341 STRN4Q9NRL3 753 aa13.81□□□□□ -0.2
CHFR-219ENST00000541341 ONECUT3O60422 494 aaPredicted RBP13.8□□□□□ -0.2
CHFR-219ENST00000541341 PRDM11Q9NQV5 511 aa13.8□□□□□ -0.2
CHFR-219ENST00000541341 RNF123Q5XPI4 1314 aa13.8□□□□□ -0.2
CHFR-219ENST00000541341 ATP7BP35670 1465 aa13.8□□□□□ -0.2
CHFR-219ENST00000541341 BAG6P46379 1132 aa13.79□□□□□ -0.2
CHFR-219ENST00000541341 ZC3H6P61129 1189 aaKnown RBP13.79□□□□□ -0.2
CHFR-219ENST00000541341 NUDCQ9Y266 331 aa13.79□□□□□ -0.2
CHFR-219ENST00000541341 KIAA0232Q92628 1395 aa13.79□□□□□ -0.2
CHFR-219ENST00000541341 NUDT16Q96DE0 195 aaKnown RBP13.78□□□□□ -0.2
CHFR-219ENST00000541341 IPO9Q96P70 1041 aaKnown RBP13.78□□□□□ -0.2
CHFR-219ENST00000541341 ZBTB47Q9UFB7 747 aaPredicted RBP13.78□□□□□ -0.2
CHFR-219ENST00000541341 SPATA31A5Q5VU36 1347 aa13.78□□□□□ -0.2
CHFR-219ENST00000541341 SPATA31A7Q8IWB4 1347 aa13.78□□□□□ -0.2
CHFR-219ENST00000541341 QRICH2Q9H0J4 1663 aa13.78□□□□□ -0.2
CHFR-219ENST00000541341 RGPD5Q99666 1765 aa13.78□□□□□ -0.2
CHFR-219ENST00000541341 INSRP06213 1382 aa13.77□□□□□ -0.21
CHFR-219ENST00000541341 EIF3AQ14152 1382 aaKnown RBP13.77□□□□□ -0.21
CHFR-219ENST00000541341 NBPF1Q3BBV0 1214 aa13.77□□□□□ -0.21
CHFR-219ENST00000541341 NRKQ7Z2Y5 1582 aa13.76□□□□□ -0.21
CHFR-219ENST00000541341 ZBTB7CA1YPR0 619 aa13.76□□□□□ -0.21
CHFR-219ENST00000541341 DEKP35659 375 aaKnown RBP13.76□□□□□ -0.21
CHFR-219ENST00000541341 PDE3BQ13370 1112 aa13.76□□□□□ -0.21
CHFR-219ENST00000541341 R3HDM1Q15032 1099 aaKnown RBP13.76□□□□□ -0.21
CHFR-219ENST00000541341 CCDC136Q96JN2 1154 aa13.76□□□□□ -0.21
CHFR-219ENST00000541341 CDK19Q9BWU1 502 aa13.76□□□□□ -0.21
CHFR-219ENST00000541341 TRIM37O94972 964 aa13.75□□□□□ -0.21
CHFR-219ENST00000541341 MS4A1P11836 297 aa13.75□□□□□ -0.21
CHFR-219ENST00000541341 EZH2Q15910 746 aaKnown RBP13.75□□□□□ -0.21
CHFR-219ENST00000541341 NUP188Q5SRE5 1749 aa13.75□□□□□ -0.21
CHFR-219ENST00000541341 ACEP12821 1306 aa13.74□□□□□ -0.21
CHFR-219ENST00000541341 TCERG1O14776 1098 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms