RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 TTC21BQ7Z4L5 1316 aa23.86■■□□□ 1.41
CLIP1-215ENST00000541108 CADPS2Q86UW7 1296 aa23.86■■□□□ 1.41
CLIP1-215ENST00000541108 MSH6P52701 1360 aa23.86■■□□□ 1.41
CLIP1-215ENST00000541108 TTC21AQ8NDW8 1320 aa23.86■■□□□ 1.41
CLIP1-215ENST00000541108 SCAF1Q9H7N4 1312 aaKnown RBP23.85■■□□□ 1.41
CLIP1-215ENST00000541108 ESCO1Q5FWF5 840 aa23.85■■□□□ 1.41
CLIP1-215ENST00000541108 XIRP1Q702N8 1843 aaKnown RBP23.84■■□□□ 1.41
CLIP1-215ENST00000541108 C1orf167Q5SNV9 1468 aa23.83■■□□□ 1.4
CLIP1-215ENST00000541108 NME9Q86XW9 330 aa23.83■■□□□ 1.4
CLIP1-215ENST00000541108 CENPBP07199 599 aaPredicted RBP23.81■■□□□ 1.4
CLIP1-215ENST00000541108 TNNT2P45379 298 aaPredicted RBP23.81■■□□□ 1.4
CLIP1-215ENST00000541108 COG3Q96JB2 828 aa23.81■■□□□ 1.4
CLIP1-215ENST00000541108 MST1RQ04912 1400 aa23.8■■□□□ 1.4
CLIP1-215ENST00000541108 INSRP06213 1382 aa23.79■■□□□ 1.4
CLIP1-215ENST00000541108 MTHFSP49914 203 aa23.79■■□□□ 1.4
CLIP1-215ENST00000541108 ORAI2Q96SN7 254 aa23.79■■□□□ 1.4
CLIP1-215ENST00000541108 KIF1AQ12756 1690 aa23.77■■□□□ 1.4
CLIP1-215ENST00000541108 AATKQ6ZMQ8 1374 aa23.77■■□□□ 1.39
CLIP1-215ENST00000541108 USP31Q70CQ4 1352 aa23.77■■□□□ 1.39
CLIP1-215ENST00000541108 PSME1Q06323 249 aa23.76■■□□□ 1.39
CLIP1-215ENST00000541108 CFAP53Q96M91 514 aa23.76■■□□□ 1.39
CLIP1-215ENST00000541108 OVOS2A0A0J9YW53 1432 aa23.75■■□□□ 1.39
CLIP1-215ENST00000541108 OVOS2Q6IE36 1432 aa23.75■■□□□ 1.39
CLIP1-215ENST00000541108 ZRANB1Q9UGI0 708 aa23.73■■□□□ 1.39
CLIP1-215ENST00000541108 HNRNPUQ00839 825 aaKnown RBP eCLIP23.73■■□□□ 1.39
CLIP1-215ENST00000541108 FOXO3O43524 673 aa23.72■■□□□ 1.39
CLIP1-215ENST00000541108 WDR43Q15061 677 aaKnown RBP eCLIP23.72■■□□□ 1.39
CLIP1-215ENST00000541108 PNPLA6Q8IY17 1366 aa23.7■■□□□ 1.38
CLIP1-215ENST00000541108 PIK3C2AO00443 1686 aa23.7■■□□□ 1.38
CLIP1-215ENST00000541108 MAP2P11137 1827 aaKnown RBP23.7■■□□□ 1.38
CLIP1-215ENST00000541108 POLKQ9UBT6 870 aa23.7■■□□□ 1.38
CLIP1-215ENST00000541108 USP54Q70EL1 1684 aa23.69■■□□□ 1.38
CLIP1-215ENST00000541108 ABTB2Q8N961 1025 aa23.69■■□□□ 1.38
CLIP1-215ENST00000541108 ADAMTS8Q9UP79 889 aa23.69■■□□□ 1.38
CLIP1-215ENST00000541108 PAK3O75914 559 aaPredicted RBP23.68■■□□□ 1.38
CLIP1-215ENST00000541108 SMG6Q86US8 1419 aaKnown RBP23.68■■□□□ 1.38
CLIP1-215ENST00000541108 NLRP6P59044 892 aa23.67■■□□□ 1.38
CLIP1-215ENST00000541108 SLAIN2Q9P270 581 aa23.67■■□□□ 1.38
CLIP1-215ENST00000541108 LTBP4Q8N2S1 1624 aa23.66■■□□□ 1.38
CLIP1-215ENST00000541108 KRT28Q7Z3Y7 464 aa23.66■■□□□ 1.38
CLIP1-215ENST00000541108 NPHP3Q7Z494 1330 aa23.65■■□□□ 1.38
CLIP1-215ENST00000541108 AEBP2Q6ZN18 517 aaPredicted RBP23.65■■□□□ 1.38
CLIP1-215ENST00000541108 BLMP54132 1417 aaPredicted RBP23.65■■□□□ 1.38
CLIP1-215ENST00000541108 ZBED9Q6R2W3 1325 aa23.64■■□□□ 1.37
CLIP1-215ENST00000541108 FBLN1P23142 703 aa23.64■■□□□ 1.37
CLIP1-215ENST00000541108 SHPRHQ149N8 1683 aa23.63■■□□□ 1.37
CLIP1-215ENST00000541108 COL3A1P02461 1466 aaPredicted RBP23.63■■□□□ 1.37
CLIP1-215ENST00000541108 NUDCQ9Y266 331 aa23.63■■□□□ 1.37
CLIP1-215ENST00000541108 TRPM3Q9HCF6 1732 aaPredicted RBP23.62■■□□□ 1.37
CLIP1-215ENST00000541108 CDK12Q9NYV4 1490 aaPredicted RBP23.62■■□□□ 1.37
CLIP1-215ENST00000541108 BRINP3Q76B58 766 aa23.62■■□□□ 1.37
CLIP1-215ENST00000541108 EMILIN1Q9Y6C2 1016 aa23.61■■□□□ 1.37
CLIP1-215ENST00000541108 DIAPH1O60610 1272 aaKnown RBP23.6■■□□□ 1.37
CLIP1-215ENST00000541108 SBNO1A3KN83 1393 aa23.6■■□□□ 1.37
CLIP1-215ENST00000541108 MARF1Q9Y4F3 1742 aaKnown RBP23.6■■□□□ 1.37
CLIP1-215ENST00000541108 RRS1Q15050 365 aaKnown RBP23.6■■□□□ 1.37
CLIP1-215ENST00000541108 PPM1GO15355 546 aaPredicted RBP23.59■■□□□ 1.37
CLIP1-215ENST00000541108 XPCQ01831 940 aaPredicted RBP23.58■■□□□ 1.37
CLIP1-215ENST00000541108 KIF24Q5T7B8 1368 aa23.57■■□□□ 1.36
CLIP1-215ENST00000541108 KCNH5Q8NCM2 988 aa23.57■■□□□ 1.36
CLIP1-215ENST00000541108 NUTM2GQ5VZR2 741 aa23.57■■□□□ 1.36
CLIP1-215ENST00000541108 PXDNQ92626 1479 aa23.55■■□□□ 1.36
CLIP1-215ENST00000541108 ALS2Q96Q42 1657 aa23.55■■□□□ 1.36
CLIP1-215ENST00000541108 MAP3K19Q56UN5 1328 aa23.54■■□□□ 1.36
CLIP1-215ENST00000541108 U2AF1L5P0DN76 240 aaPredicted RBP23.54■■□□□ 1.36
CLIP1-215ENST00000541108 U2AF1Q01081 240 aaKnown RBP eCLIP23.54■■□□□ 1.36
CLIP1-215ENST00000541108 IL13P35225 146 aa23.52■■□□□ 1.36
CLIP1-215ENST00000541108 NGEFQ8N5V2 710 aa23.52■■□□□ 1.36
CLIP1-215ENST00000541108 DDX17Q92841 729 aaKnown RBP23.52■■□□□ 1.36
CLIP1-215ENST00000541108 USP19O94966 1318 aa23.52■■□□□ 1.36
CLIP1-215ENST00000541108 SOS2Q07890 1332 aaPredicted RBP23.52■■□□□ 1.36
CLIP1-215ENST00000541108 FLT4P35916 1363 aa23.52■■□□□ 1.36
CLIP1-215ENST00000541108 SOX12O15370 315 aa23.51■■□□□ 1.35
CLIP1-215ENST00000541108 PNNQ9H307 717 aaKnown RBP23.51■■□□□ 1.35
CLIP1-215ENST00000541108 TNS3Q68CZ2 1445 aa23.51■■□□□ 1.35
CLIP1-215ENST00000541108 SLIT3O75094 1523 aa23.51■■□□□ 1.35
CLIP1-215ENST00000541108 U2SURPO15042 1029 aaKnown RBP23.51■■□□□ 1.35
CLIP1-215ENST00000541108 LMOD2Q6P5Q4 547 aa23.51■■□□□ 1.35
CLIP1-215ENST00000541108 RUNDC1Q96C34 613 aa23.51■■□□□ 1.35
CLIP1-215ENST00000541108 SPATA31A3Q5VYP0 1347 aa23.51■■□□□ 1.35
CLIP1-215ENST00000541108 ARHGEF10O15013 1369 aa23.5■■□□□ 1.35
CLIP1-215ENST00000541108 GCP02774 474 aa23.49■■□□□ 1.35
CLIP1-215ENST00000541108 AMPHP49418 695 aa23.49■■□□□ 1.35
CLIP1-215ENST00000541108 NFAT5O94916 1531 aa23.49■■□□□ 1.35
CLIP1-215ENST00000541108 PEAK1Q9H792 1746 aa23.49■■□□□ 1.35
CLIP1-215ENST00000541108 FCHSD2O94868 740 aa23.48■■□□□ 1.35
CLIP1-215ENST00000541108 RTL1A6NKG5 1358 aa23.48■■□□□ 1.35
CLIP1-215ENST00000541108 HSP90AB2PQ58FF8 381 aa23.48■■□□□ 1.35
CLIP1-215ENST00000541108 CCDC146Q8IYE0 955 aa23.48■■□□□ 1.35
CLIP1-215ENST00000541108 NHSL1Q5SYE7 1610 aa23.47■■□□□ 1.35
CLIP1-215ENST00000541108 NCBP3Q53F19 620 aaKnown RBP23.46■■□□□ 1.35
CLIP1-215ENST00000541108 PHRF1Q9P1Y6 1649 aaKnown RBP23.45■■□□□ 1.35
CLIP1-215ENST00000541108 APAF1O14727 1248 aa23.45■■□□□ 1.34
CLIP1-215ENST00000541108 PDE3BQ13370 1112 aa23.45■■□□□ 1.34
CLIP1-215ENST00000541108 EIF4A2Q14240 407 aaKnown RBP23.45■■□□□ 1.34
CLIP1-215ENST00000541108 HOXC9P31274 260 aa23.44■■□□□ 1.34
CLIP1-215ENST00000541108 PLEKHF1Q96S99 279 aa23.44■■□□□ 1.34
CLIP1-215ENST00000541108 LTN1O94822 1766 aa23.43■■□□□ 1.34
CLIP1-215ENST00000541108 ARHGEF25Q86VW2 580 aa23.43■■□□□ 1.34
CLIP1-215ENST00000541108 IP6K1Q92551 441 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms