RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 TRPC5Q9UL62 973 aaPredicted RBP16.79■□□□□ 0.28
SYNE1-238ENST00000540663 ATRNO75882 1429 aa16.79■□□□□ 0.28
SYNE1-238ENST00000540663 PAK3O75914 559 aaPredicted RBP16.78■□□□□ 0.28
SYNE1-238ENST00000540663 CABP2Q9NPB3 220 aa16.78■□□□□ 0.28
SYNE1-238ENST00000540663 TIMELESSQ9UNS1 1208 aa16.78■□□□□ 0.28
SYNE1-238ENST00000540663 BCL9LQ86UU0 1499 aa16.78■□□□□ 0.28
SYNE1-238ENST00000540663 SLIT2O94813 1529 aa16.77■□□□□ 0.28
SYNE1-238ENST00000540663 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.77■□□□□ 0.28
SYNE1-238ENST00000540663 CABLES1Q8TDN4 633 aa16.77■□□□□ 0.28
SYNE1-238ENST00000540663 ATAD2Q6PL18 1390 aa16.76■□□□□ 0.27
SYNE1-238ENST00000540663 NWD2Q9ULI1 1742 aa16.74■□□□□ 0.27
SYNE1-238ENST00000540663 UNC5CLQ8IV45 518 aa16.74■□□□□ 0.27
SYNE1-238ENST00000540663 CRYBG1Q9Y4K1 1723 aa16.73■□□□□ 0.27
SYNE1-238ENST00000540663 CABP1Q9NZU7 370 aa16.73■□□□□ 0.27
SYNE1-238ENST00000540663 RGS12O14924 1447 aa16.72■□□□□ 0.27
SYNE1-238ENST00000540663 SLC24A1O60721 1099 aa16.72■□□□□ 0.27
SYNE1-238ENST00000540663 PLCH1Q4KWH8 1693 aa16.72■□□□□ 0.27
SYNE1-238ENST00000540663 USP6P35125 1406 aa16.71■□□□□ 0.27
SYNE1-238ENST00000540663 PLEKHG5O94827 1062 aa16.71■□□□□ 0.27
SYNE1-238ENST00000540663 COL14A1Q05707 1796 aaKnown RBP16.71■□□□□ 0.27
SYNE1-238ENST00000540663 FAM83GA6ND36 823 aa16.7■□□□□ 0.26
SYNE1-238ENST00000540663 PUS7Q96PZ0 661 aaKnown RBP16.7■□□□□ 0.26
SYNE1-238ENST00000540663 ZNF692Q9BU19 519 aaPredicted RBP16.7■□□□□ 0.26
SYNE1-238ENST00000540663 PHRF1Q9P1Y6 1649 aaKnown RBP16.7■□□□□ 0.26
SYNE1-238ENST00000540663 ABTB2Q8N961 1025 aa16.69■□□□□ 0.26
SYNE1-238ENST00000540663 GJD4Q96KN9 370 aaPredicted RBP16.69■□□□□ 0.26
SYNE1-238ENST00000540663 USP19O94966 1318 aa16.69■□□□□ 0.26
SYNE1-238ENST00000540663 VPS72Q15906 364 aa16.68■□□□□ 0.26
SYNE1-238ENST00000540663 NLRP13Q86W25 1043 aa16.68■□□□□ 0.26
SYNE1-238ENST00000540663 SSH2Q76I76 1423 aa16.68■□□□□ 0.26
SYNE1-238ENST00000540663 PRDM11Q9NQV5 511 aa16.67■□□□□ 0.26
SYNE1-238ENST00000540663 CPSF1Q10570 1443 aaKnown RBP16.67■□□□□ 0.26
SYNE1-238ENST00000540663 AKAP12Q02952 1782 aa16.66■□□□□ 0.26
SYNE1-238ENST00000540663 CCER1Q8TC90 406 aaPredicted RBP16.66■□□□□ 0.26
SYNE1-238ENST00000540663 KIAA0232Q92628 1395 aa16.65■□□□□ 0.26
SYNE1-238ENST00000540663 NRAPQ86VF7 1730 aa16.65■□□□□ 0.26
SYNE1-238ENST00000540663 GLI3P10071 1580 aa16.65■□□□□ 0.26
SYNE1-238ENST00000540663 NRKQ7Z2Y5 1582 aa16.65■□□□□ 0.26
SYNE1-238ENST00000540663 ST20-MTHFSA0A0A6YYL1 179 aa16.65■□□□□ 0.26
SYNE1-238ENST00000540663 NUTM2GQ5VZR2 741 aa16.65■□□□□ 0.26
SYNE1-238ENST00000540663 TESK2Q96S53 571 aa16.65■□□□□ 0.26
SYNE1-238ENST00000540663 BTG4Q9NY30 223 aa16.65■□□□□ 0.26
SYNE1-238ENST00000540663 TTC21AQ8NDW8 1320 aa16.65■□□□□ 0.26
SYNE1-238ENST00000540663 CPDO75976 1380 aa16.64■□□□□ 0.26
SYNE1-238ENST00000540663 USP47Q96K76 1375 aa16.64■□□□□ 0.26
SYNE1-238ENST00000540663 KTN1Q86UP2 1357 aaKnown RBP16.64■□□□□ 0.25
SYNE1-238ENST00000540663 NINLQ9Y2I6 1382 aa16.64■□□□□ 0.25
SYNE1-238ENST00000540663 TTC21BQ7Z4L5 1316 aa16.63■□□□□ 0.25
SYNE1-238ENST00000540663 PIK3C2AO00443 1686 aa16.62■□□□□ 0.25
SYNE1-238ENST00000540663 SLIT3O75094 1523 aa16.62■□□□□ 0.25
SYNE1-238ENST00000540663 GCP02774 474 aa16.62■□□□□ 0.25
SYNE1-238ENST00000540663 NLRP6P59044 892 aa16.62■□□□□ 0.25
SYNE1-238ENST00000540663 UPF1Q92900 1129 aaKnown RBP eCLIP16.62■□□□□ 0.25
SYNE1-238ENST00000540663 CCDC9Q9Y3X0 531 aaKnown RBP16.62■□□□□ 0.25
SYNE1-238ENST00000540663 MON2Q7Z3U7 1717 aa16.62■□□□□ 0.25
SYNE1-238ENST00000540663 ZC3H6P61129 1189 aaKnown RBP16.61■□□□□ 0.25
SYNE1-238ENST00000540663 HDGFL2Q7Z4V5 671 aaPredicted RBP16.61■□□□□ 0.25
SYNE1-238ENST00000540663 ONECUT3O60422 494 aaPredicted RBP16.6■□□□□ 0.25
SYNE1-238ENST00000540663 TMC1Q8TDI8 760 aa16.6■□□□□ 0.25
SYNE1-238ENST00000540663 TERF2IPQ9NYB0 399 aa16.6■□□□□ 0.25
SYNE1-238ENST00000540663 CD163L1Q9NR16 1453 aa16.6■□□□□ 0.25
SYNE1-238ENST00000540663 TMF1P82094 1093 aa16.59■□□□□ 0.25
SYNE1-238ENST00000540663 CHRNA2Q15822 529 aa16.58■□□□□ 0.24
SYNE1-238ENST00000540663 SPATA31A5Q5VU36 1347 aa16.58■□□□□ 0.24
SYNE1-238ENST00000540663 SPATA31A7Q8IWB4 1347 aa16.58■□□□□ 0.24
SYNE1-238ENST00000540663 EDC4Q6P2E9 1401 aaKnown RBP16.58■□□□□ 0.24
SYNE1-238ENST00000540663 LMO7Q8WWI1 1683 aa16.58■□□□□ 0.24
SYNE1-238ENST00000540663 EP400Q96L91 3159 aa16.57■□□□□ 0.24
SYNE1-238ENST00000540663 CDCA8Q53HL2 280 aa16.57■□□□□ 0.24
SYNE1-238ENST00000540663 KCNH5Q8NCM2 988 aa16.57■□□□□ 0.24
SYNE1-238ENST00000540663 SLC12A5Q9H2X9 1139 aa16.57■□□□□ 0.24
SYNE1-238ENST00000540663 AATKQ6ZMQ8 1374 aa16.56■□□□□ 0.24
SYNE1-238ENST00000540663 SEPT12Q8IYM1 358 aa16.56■□□□□ 0.24
SYNE1-238ENST00000540663 USP54Q70EL1 1684 aa16.56■□□□□ 0.24
SYNE1-238ENST00000540663 A0A1W2PP64 1363 aa16.55■□□□□ 0.24
SYNE1-238ENST00000540663 USP31Q70CQ4 1352 aa16.55■□□□□ 0.24
SYNE1-238ENST00000540663 CAMTA1Q9Y6Y1 1673 aa16.55■□□□□ 0.24
SYNE1-238ENST00000540663 EVA1CP58658 441 aa16.54■□□□□ 0.24
SYNE1-238ENST00000540663 SPATA31A1Q5TZJ5 1347 aa16.53■□□□□ 0.24
SYNE1-238ENST00000540663 FAM98CQ17RN3 349 aaKnown RBP16.53■□□□□ 0.24
SYNE1-238ENST00000540663 STRN4Q9NRL3 753 aa16.53■□□□□ 0.24
SYNE1-238ENST00000540663 NFAT5O94916 1531 aa16.53■□□□□ 0.24
SYNE1-238ENST00000540663 COL5A2P05997 1499 aaPredicted RBP16.53■□□□□ 0.24
SYNE1-238ENST00000540663 ANKRD36BQ8N2N9 1353 aa16.52■□□□□ 0.24
SYNE1-238ENST00000540663 BRWD3Q6RI45 1802 aa16.52■□□□□ 0.24
SYNE1-238ENST00000540663 ABCC6O95255 1503 aa16.52■□□□□ 0.24
SYNE1-238ENST00000540663 CCDC125Q86Z20 511 aa16.52■□□□□ 0.24
SYNE1-238ENST00000540663 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.52■□□□□ 0.24
SYNE1-238ENST00000540663 THSD7AQ9UPZ6 1657 aa16.51■□□□□ 0.23
SYNE1-238ENST00000540663 A0A0G2JS52 829 aa16.51■□□□□ 0.23
SYNE1-238ENST00000540663 MYT1Q01538 1121 aa16.51■□□□□ 0.23
SYNE1-238ENST00000540663 KRT27Q7Z3Y8 459 aa16.51■□□□□ 0.23
SYNE1-238ENST00000540663 ARHGEF25Q86VW2 580 aa16.51■□□□□ 0.23
SYNE1-238ENST00000540663 NME9Q86XW9 330 aa16.5■□□□□ 0.23
SYNE1-238ENST00000540663 COL18A1P39060 1754 aa16.49■□□□□ 0.23
SYNE1-238ENST00000540663 ZBTB7CA1YPR0 619 aa16.49■□□□□ 0.23
SYNE1-238ENST00000540663 LARP1Q6PKG0 1096 aaKnown RBP16.49■□□□□ 0.23
SYNE1-238ENST00000540663 BARGINQ6ZT62 677 aa16.49■□□□□ 0.23
SYNE1-238ENST00000540663 THRAP3Q9Y2W1 955 aaKnown RBP16.49■□□□□ 0.23
SYNE1-238ENST00000540663 OVOS2A0A0J9YW53 1432 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms