RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FOXD4L5Q5VV16 416 aaPredicted RBP15.86■□□□□ 0.13
SFSWAP-209ENST00000540469 FOXD4L4Q8WXT5 416 aaPredicted RBP15.86■□□□□ 0.13
SFSWAP-209ENST00000540469 KIF16BQ96L93 1317 aa15.86■□□□□ 0.13
SFSWAP-209ENST00000540469 PRPF40AO75400 957 aaKnown RBP15.86■□□□□ 0.13
SFSWAP-209ENST00000540469 NUCB2P80303 420 aa15.86■□□□□ 0.13
SFSWAP-209ENST00000540469 UNC13BO14795 1591 aa15.86■□□□□ 0.13
SFSWAP-209ENST00000540469 ZBTB40Q9NUA8 1239 aa15.85■□□□□ 0.13
SFSWAP-209ENST00000540469 PRDM4Q9UKN5 801 aa15.85■□□□□ 0.13
SFSWAP-209ENST00000540469 CSPP1Q1MSJ5 1256 aa15.85■□□□□ 0.13
SFSWAP-209ENST00000540469 RNF214Q8ND24 703 aa15.85■□□□□ 0.13
SFSWAP-209ENST00000540469 ABCA8O94911 1581 aa15.85■□□□□ 0.13
SFSWAP-209ENST00000540469 MADDQ8WXG6 1647 aa15.84■□□□□ 0.13
SFSWAP-209ENST00000540469 ADGRF5Q8IZF2 1346 aa15.84■□□□□ 0.13
SFSWAP-209ENST00000540469 PHF23Q9BUL5 403 aaPredicted RBP15.84■□□□□ 0.13
SFSWAP-209ENST00000540469 RBSNQ9H1K0 784 aa15.84■□□□□ 0.13
SFSWAP-209ENST00000540469 IQGAP1P46940 1657 aa15.84■□□□□ 0.13
SFSWAP-209ENST00000540469 MAST1Q9Y2H9 1570 aa15.84■□□□□ 0.13
SFSWAP-209ENST00000540469 ERVK-7P63135 1459 aa15.84■□□□□ 0.13
SFSWAP-209ENST00000540469 IQGAP3Q86VI3 1631 aa15.84■□□□□ 0.13
SFSWAP-209ENST00000540469 RBM27Q9P2N5 1060 aaKnown RBP15.84■□□□□ 0.13
SFSWAP-209ENST00000540469 PRIM1P49642 420 aaKnown RBP15.83■□□□□ 0.12
SFSWAP-209ENST00000540469 NOL7Q9UMY1 257 aaKnown RBP15.83■□□□□ 0.12
SFSWAP-209ENST00000540469 CDC45O75419 566 aa15.83■□□□□ 0.12
SFSWAP-209ENST00000540469 ATP10AO60312 1499 aa15.83■□□□□ 0.12
SFSWAP-209ENST00000540469 TERF1P54274 439 aa15.82■□□□□ 0.12
SFSWAP-209ENST00000540469 FGD1P98174 961 aa15.82■□□□□ 0.12
SFSWAP-209ENST00000540469 KIF2CQ99661 725 aa15.82■□□□□ 0.12
SFSWAP-209ENST00000540469 DUOX2Q9NRD8 1548 aa15.82■□□□□ 0.12
SFSWAP-209ENST00000540469 TMPOP42166 694 aaKnown RBP15.82■□□□□ 0.12
SFSWAP-209ENST00000540469 MTERF4Q7Z6M4 381 aaKnown RBP15.82■□□□□ 0.12
SFSWAP-209ENST00000540469 SPAG9O60271 1321 aaKnown RBP15.82■□□□□ 0.12
SFSWAP-209ENST00000540469 SENP3Q9H4L4 574 aaPredicted RBP15.81■□□□□ 0.12
SFSWAP-209ENST00000540469 ZNF445P59923 1031 aa15.81■□□□□ 0.12
SFSWAP-209ENST00000540469 EFCAB2Q5VUJ9 269 aa15.81■□□□□ 0.12
SFSWAP-209ENST00000540469 ZKSCAN5Q9Y2L8 839 aa15.81■□□□□ 0.12
SFSWAP-209ENST00000540469 MYOM1P52179 1685 aa15.81■□□□□ 0.12
SFSWAP-209ENST00000540469 HS1BP3Q53T59 392 aa15.81■□□□□ 0.12
SFSWAP-209ENST00000540469 CCDC39Q9UFE4 941 aa15.81■□□□□ 0.12
SFSWAP-209ENST00000540469 KANK1Q14678 1352 aa15.8■□□□□ 0.12
SFSWAP-209ENST00000540469 SYCE3A1L190 88 aa15.8■□□□□ 0.12
SFSWAP-209ENST00000540469 RABEP1Q15276 862 aa15.8■□□□□ 0.12
SFSWAP-209ENST00000540469 SAFB2Q14151 953 aaKnown RBP eCLIP15.8■□□□□ 0.12
SFSWAP-209ENST00000540469 GCC1Q96CN9 775 aa15.8■□□□□ 0.12
SFSWAP-209ENST00000540469 ELL2O00472 640 aaPredicted RBP15.8■□□□□ 0.12
SFSWAP-209ENST00000540469 KIF3BO15066 747 aa15.8■□□□□ 0.12
SFSWAP-209ENST00000540469 TPRNQ4KMQ1 711 aa15.8■□□□□ 0.12
SFSWAP-209ENST00000540469 CHMP4BQ9H444 224 aaKnown RBP15.8■□□□□ 0.12
SFSWAP-209ENST00000540469 APBB1O00213 710 aa15.79■□□□□ 0.12
SFSWAP-209ENST00000540469 PDE4CQ08493 712 aa15.79■□□□□ 0.12
SFSWAP-209ENST00000540469 TTC37Q6PGP7 1564 aa15.79■□□□□ 0.12
SFSWAP-209ENST00000540469 DYNC1I1O14576 645 aa15.79■□□□□ 0.12
SFSWAP-209ENST00000540469 MPNDQ8N594 471 aa15.79■□□□□ 0.12
SFSWAP-209ENST00000540469 IBTKQ9P2D0 1353 aaPredicted RBP15.78■□□□□ 0.12
SFSWAP-209ENST00000540469 CDC42BPBQ9Y5S2 1711 aa15.78■□□□□ 0.12
SFSWAP-209ENST00000540469 ST18O60284 1047 aa15.78■□□□□ 0.12
SFSWAP-209ENST00000540469 ZNF500O60304 480 aaPredicted RBP15.78■□□□□ 0.12
SFSWAP-209ENST00000540469 PKP1Q13835 747 aa15.78■□□□□ 0.12
SFSWAP-209ENST00000540469 TMEM132EQ6IEE7 984 aa15.78■□□□□ 0.12
SFSWAP-209ENST00000540469 SASS6Q6UVJ0 657 aa15.78■□□□□ 0.12
SFSWAP-209ENST00000540469 LMBRD1Q9NUN5 540 aa15.77■□□□□ 0.12
SFSWAP-209ENST00000540469 PREX2Q70Z35 1606 aa15.77■□□□□ 0.12
SFSWAP-209ENST00000540469 IQSEC2Q5JU85 1478 aa15.77■□□□□ 0.12
SFSWAP-209ENST00000540469 AFAP1Q8N556 730 aa15.77■□□□□ 0.12
SFSWAP-209ENST00000540469 CASC1Q6TDU7 716 aa15.77■□□□□ 0.11
SFSWAP-209ENST00000540469 AK9Q5TCS8 1911 aa15.77■□□□□ 0.11
SFSWAP-209ENST00000540469 GGNBP2Q9H3C7 697 aa15.76■□□□□ 0.11
SFSWAP-209ENST00000540469 CEP152O94986 1710 aa15.76■□□□□ 0.11
SFSWAP-209ENST00000540469 FOXD4L6Q3SYB3 417 aaPredicted RBP15.76■□□□□ 0.11
SFSWAP-209ENST00000540469 FOXD4L3Q6VB84 417 aaPredicted RBP15.76■□□□□ 0.11
SFSWAP-209ENST00000540469 PTPRTO14522 1441 aa15.75■□□□□ 0.11
SFSWAP-209ENST00000540469 ABCC11Q96J66 1382 aa15.75■□□□□ 0.11
SFSWAP-209ENST00000540469 KIAA2012Q0VF49 1180 aa15.74■□□□□ 0.11
SFSWAP-209ENST00000540469 CHAMP1Q96JM3 812 aa15.74■□□□□ 0.11
SFSWAP-209ENST00000540469 ZNF518AQ6AHZ1 1483 aa15.74■□□□□ 0.11
SFSWAP-209ENST00000540469 ZGPATQ8N5A5 531 aaKnown RBP15.74■□□□□ 0.11
SFSWAP-209ENST00000540469 BCL11BQ9C0K0 894 aaPredicted RBP15.74■□□□□ 0.11
SFSWAP-209ENST00000540469 TRIM35Q9UPQ4 493 aa15.74■□□□□ 0.11
SFSWAP-209ENST00000540469 SMAP1Q8IYB5 467 aaPredicted RBP15.74■□□□□ 0.11
SFSWAP-209ENST00000540469 MCM5P33992 734 aa15.73■□□□□ 0.11
SFSWAP-209ENST00000540469 PLCB2Q00722 1185 aa15.73■□□□□ 0.11
SFSWAP-209ENST00000540469 LRSAM1Q6UWE0 723 aa15.73■□□□□ 0.11
SFSWAP-209ENST00000540469 NOL8Q76FK4 1167 aaKnown RBP15.73■□□□□ 0.11
SFSWAP-209ENST00000540469 CFAP44Q96MT7 982 aa15.73■□□□□ 0.11
SFSWAP-209ENST00000540469 CWC22Q9HCG8 908 aaKnown RBP15.73■□□□□ 0.11
SFSWAP-209ENST00000540469 INTS3Q68E01 1043 aaKnown RBP15.72■□□□□ 0.11
SFSWAP-209ENST00000540469 CLEC17AQ6ZS10 378 aa15.72■□□□□ 0.11
SFSWAP-209ENST00000540469 GPT2Q8TD30 523 aa15.72■□□□□ 0.11
SFSWAP-209ENST00000540469 PDLIM2Q96JY6 352 aa15.72■□□□□ 0.11
SFSWAP-209ENST00000540469 CABP2Q9NPB3 220 aa15.72■□□□□ 0.11
SFSWAP-209ENST00000540469 TRHP20396 242 aaPredicted RBP15.72■□□□□ 0.11
SFSWAP-209ENST00000540469 SRPK2P78362 688 aaKnown RBP15.72■□□□□ 0.11
SFSWAP-209ENST00000540469 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.72■□□□□ 0.11
SFSWAP-209ENST00000540469 TMEM63CQ9P1W3 806 aa15.72■□□□□ 0.11
SFSWAP-209ENST00000540469 BBXQ8WY36 941 aaPredicted RBP15.71■□□□□ 0.11
SFSWAP-209ENST00000540469 SPHKAPQ2M3C7 1700 aa15.71■□□□□ 0.11
SFSWAP-209ENST00000540469 ALDH1L2Q3SY69 923 aa15.71■□□□□ 0.11
SFSWAP-209ENST00000540469 NUTM2DQ5VT03 806 aaPredicted RBP15.71■□□□□ 0.11
SFSWAP-209ENST00000540469 AEBP2Q6ZN18 517 aaPredicted RBP15.71■□□□□ 0.11
SFSWAP-209ENST00000540469 FAM69CQ0P6D2 419 aa15.71■□□□□ 0.1
SFSWAP-209ENST00000540469 TRPM2O94759 1503 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms