RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 POLKQ9UBT6 870 aa21.7■■□□□ 1.06
USP28-208ENST00000540438 MYH16Q9H6N6 1097 aa21.7■■□□□ 1.06
USP28-208ENST00000540438 C1orf115Q9H7X2 142 aa21.69■■□□□ 1.06
USP28-208ENST00000540438 SETBP1Q9Y6X0 1596 aa21.69■■□□□ 1.06
USP28-208ENST00000540438 PDE3AQ14432 1141 aa21.69■■□□□ 1.06
USP28-208ENST00000540438 WDR63Q8IWG1 891 aa21.69■■□□□ 1.06
USP28-208ENST00000540438 PDZRN3Q9UPQ7 1066 aa21.69■■□□□ 1.06
USP28-208ENST00000540438 METP08581 1390 aa21.68■■□□□ 1.06
USP28-208ENST00000540438 RBM33Q96EV2 1170 aaKnown RBP21.68■■□□□ 1.06
USP28-208ENST00000540438 SHPRHQ149N8 1683 aa21.68■■□□□ 1.06
USP28-208ENST00000540438 ARHGEF28Q8N1W1 1705 aaKnown RBP21.67■■□□□ 1.06
USP28-208ENST00000540438 TRIM27P14373 513 aa21.67■■□□□ 1.06
USP28-208ENST00000540438 ABCC11Q96J66 1382 aa21.66■■□□□ 1.06
USP28-208ENST00000540438 PTPRMP28827 1452 aa21.66■■□□□ 1.06
USP28-208ENST00000540438 TSPYL6Q8N831 410 aa21.66■■□□□ 1.06
USP28-208ENST00000540438 CFAP74Q9C0B2 1584 aa21.66■■□□□ 1.06
USP28-208ENST00000540438 RICTORQ6R327 1708 aa21.66■■□□□ 1.06
USP28-208ENST00000540438 DZIP1LQ8IYY4 767 aaKnown RBP21.66■■□□□ 1.06
USP28-208ENST00000540438 PHF23Q9BUL5 403 aaPredicted RBP21.65■■□□□ 1.06
USP28-208ENST00000540438 ZKSCAN2Q63HK3 967 aa21.65■■□□□ 1.06
USP28-208ENST00000540438 PMFBP1Q8TBY8 1022 aa21.64■■□□□ 1.06
USP28-208ENST00000540438 SLKQ9H2G2 1235 aaPredicted RBP21.64■■□□□ 1.06
USP28-208ENST00000540438 MYO3AQ8NEV4 1616 aa21.64■■□□□ 1.05
USP28-208ENST00000540438 TMEM57Q8N5G2 664 aa21.64■■□□□ 1.05
USP28-208ENST00000540438 NUDT16Q96DE0 195 aaKnown RBP21.64■■□□□ 1.05
USP28-208ENST00000540438 NUTM2GQ5VZR2 741 aa21.63■■□□□ 1.05
USP28-208ENST00000540438 KRT24Q2M2I5 525 aa21.63■■□□□ 1.05
USP28-208ENST00000540438 RIMS2Q9UQ26 1411 aa21.62■■□□□ 1.05
USP28-208ENST00000540438 CD163L1Q9NR16 1453 aa21.62■■□□□ 1.05
USP28-208ENST00000540438 AEBP1Q8IUX7 1158 aa21.62■■□□□ 1.05
USP28-208ENST00000540438 ZC3H13Q5T200 1668 aaKnown RBP21.62■■□□□ 1.05
USP28-208ENST00000540438 ATAD2Q6PL18 1390 aa21.62■■□□□ 1.05
USP28-208ENST00000540438 WASLO00401 505 aaPredicted RBP21.61■■□□□ 1.05
USP28-208ENST00000540438 MVPQ14764 893 aaKnown RBP21.61■■□□□ 1.05
USP28-208ENST00000540438 NEURL4Q96JN8 1562 aa21.6■■□□□ 1.05
USP28-208ENST00000540438 TMEM131LA2VDJ0 1609 aa21.6■■□□□ 1.05
USP28-208ENST00000540438 ALKQ9UM73 1620 aa21.59■■□□□ 1.05
USP28-208ENST00000540438 IQSEC2Q5JU85 1478 aa21.59■■□□□ 1.05
USP28-208ENST00000540438 ARHGAP31Q2M1Z3 1444 aa21.59■■□□□ 1.05
USP28-208ENST00000540438 PREX1Q8TCU6 1659 aa21.59■■□□□ 1.05
USP28-208ENST00000540438 MIS18AQ9NYP9 233 aa21.58■■□□□ 1.05
USP28-208ENST00000540438 ZMYM3Q14202 1370 aa21.57■■□□□ 1.04
USP28-208ENST00000540438 LTKP29376 864 aa21.57■■□□□ 1.04
USP28-208ENST00000540438 RTN4Q9NQC3 1192 aaKnown RBP21.57■■□□□ 1.04
USP28-208ENST00000540438 RSPH6AQ9H0K4 717 aa21.56■■□□□ 1.04
USP28-208ENST00000540438 LNPKQ9C0E8 428 aa21.55■■□□□ 1.04
USP28-208ENST00000540438 PPIP5K1Q6PFW1 1433 aa21.55■■□□□ 1.04
USP28-208ENST00000540438 ATF7IPQ6VMQ6 1270 aa21.55■■□□□ 1.04
USP28-208ENST00000540438 COG3Q96JB2 828 aa21.55■■□□□ 1.04
USP28-208ENST00000540438 PRR36Q9H6K5 1346 aa21.55■■□□□ 1.04
USP28-208ENST00000540438 A2ML1A8K2U0 1454 aa21.55■■□□□ 1.04
USP28-208ENST00000540438 CCDC27Q2M243 656 aa21.55■■□□□ 1.04
USP28-208ENST00000540438 ARXQ96QS3 562 aa21.55■■□□□ 1.04
USP28-208ENST00000540438 RIMBP3CA6NJZ7 1639 aa21.55■■□□□ 1.04
USP28-208ENST00000540438 RIMBP3BA6NNM3 1639 aa21.55■■□□□ 1.04
USP28-208ENST00000540438 RIMBP3Q9UFD9 1639 aa21.55■■□□□ 1.04
USP28-208ENST00000540438 FRAT2O75474 233 aaPredicted RBP21.54■■□□□ 1.04
USP28-208ENST00000540438 MFAP1P55081 439 aaKnown RBP21.54■■□□□ 1.04
USP28-208ENST00000540438 NGEFQ8N5V2 710 aa21.54■■□□□ 1.04
USP28-208ENST00000540438 CLTCQ00610 1675 aaKnown RBP21.54■■□□□ 1.04
USP28-208ENST00000540438 APBB1O00213 710 aa21.54■■□□□ 1.04
USP28-208ENST00000540438 NFKBIBQ15653 356 aa21.54■■□□□ 1.04
USP28-208ENST00000540438 DDRGK1Q96HY6 314 aa21.54■■□□□ 1.04
USP28-208ENST00000540438 RWDD1Q9H446 243 aaPredicted RBP21.54■■□□□ 1.04
USP28-208ENST00000540438 MCM10Q7L590 875 aa21.53■■□□□ 1.04
USP28-208ENST00000540438 USP19O94966 1318 aa21.53■■□□□ 1.04
USP28-208ENST00000540438 SULT6B1Q6IMI4 303 aa21.52■■□□□ 1.04
USP28-208ENST00000540438 HSP90AB2PQ58FF8 381 aa21.52■■□□□ 1.04
USP28-208ENST00000540438 NSD2O96028 1365 aa21.52■■□□□ 1.03
USP28-208ENST00000540438 ARHGEF40Q8TER5 1519 aa21.51■■□□□ 1.03
USP28-208ENST00000540438 C8orf58Q8NAV2 365 aa21.51■■□□□ 1.03
USP28-208ENST00000540438 CCDC61Q9Y6R9 512 aa21.51■■□□□ 1.03
USP28-208ENST00000540438 ZBTB7CA1YPR0 619 aa21.5■■□□□ 1.03
USP28-208ENST00000540438 MBIPQ9NS73 344 aa21.5■■□□□ 1.03
USP28-208ENST00000540438 PUS7Q96PZ0 661 aaKnown RBP21.5■■□□□ 1.03
USP28-208ENST00000540438 NLRP1Q9C000 1473 aa21.5■■□□□ 1.03
USP28-208ENST00000540438 FCHSD2O94868 740 aa21.49■■□□□ 1.03
USP28-208ENST00000540438 C14orf37Q86TY3 774 aa21.49■■□□□ 1.03
USP28-208ENST00000540438 FOXO3O43524 673 aa21.49■■□□□ 1.03
USP28-208ENST00000540438 IL13P35225 146 aa21.48■■□□□ 1.03
USP28-208ENST00000540438 LTV1Q96GA3 475 aaPredicted RBP21.48■■□□□ 1.03
USP28-208ENST00000540438 ZFYVE9O95405 1425 aa21.48■■□□□ 1.03
USP28-208ENST00000540438 NECTIN2Q92692 538 aa21.47■■□□□ 1.03
USP28-208ENST00000540438 NFE2L2Q16236 605 aa21.47■■□□□ 1.03
USP28-208ENST00000540438 ROBO2Q9HCK4 1378 aa21.46■■□□□ 1.03
USP28-208ENST00000540438 DIP2BQ9P265 1576 aa21.46■■□□□ 1.03
USP28-208ENST00000540438 ACEP12821 1306 aa21.46■■□□□ 1.03
USP28-208ENST00000540438 COL3A1P02461 1466 aaPredicted RBP21.46■■□□□ 1.03
USP28-208ENST00000540438 TRHP20396 242 aaPredicted RBP21.44■■□□□ 1.02
USP28-208ENST00000540438 VAMP4O75379 141 aa21.44■■□□□ 1.02
USP28-208ENST00000540438 ANKRD45Q5TZF3 282 aa21.44■■□□□ 1.02
USP28-208ENST00000540438 CPS1P31327 1500 aa21.43■■□□□ 1.02
USP28-208ENST00000540438 TWISTNBQ3B726 338 aaPredicted RBP21.43■■□□□ 1.02
USP28-208ENST00000540438 DDX19BQ9UMR2 479 aa21.43■■□□□ 1.02
USP28-208ENST00000540438 IL27Q8NEV9 243 aa21.42■■□□□ 1.02
USP28-208ENST00000540438 EIF4A2Q14240 407 aaKnown RBP21.42■■□□□ 1.02
USP28-208ENST00000540438 LRRC7Q96NW7 1537 aa21.41■■□□□ 1.02
USP28-208ENST00000540438 ZBTB40Q9NUA8 1239 aa21.4■■□□□ 1.02
USP28-208ENST00000540438 NGDNQ8NEJ9 315 aaKnown RBP21.4■■□□□ 1.02
USP28-208ENST00000540438 AMOTL2Q9Y2J4 779 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms