RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 NKTRP30414 1462 aaKnown RBP22.54■■□□□ 1.2
COPS3-212ENST00000539941 PIP4K2BP78356 416 aa22.54■■□□□ 1.2
COPS3-212ENST00000539941 GGNBP2Q9H3C7 697 aa22.54■■□□□ 1.2
COPS3-212ENST00000539941 NRKQ7Z2Y5 1582 aa22.52■■□□□ 1.2
COPS3-212ENST00000539941 CFAP53Q96M91 514 aa22.52■■□□□ 1.2
COPS3-212ENST00000539941 ACEP12821 1306 aa22.51■■□□□ 1.19
COPS3-212ENST00000539941 TNNT2P45379 298 aaPredicted RBP22.5■■□□□ 1.19
COPS3-212ENST00000539941 USP6P35125 1406 aa22.5■■□□□ 1.19
COPS3-212ENST00000539941 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.49■■□□□ 1.19
COPS3-212ENST00000539941 ADAMTS8Q9UP79 889 aa22.49■■□□□ 1.19
COPS3-212ENST00000539941 MTHFSP49914 203 aa22.49■■□□□ 1.19
COPS3-212ENST00000539941 RGPD8O14715 1765 aaPredicted RBP22.48■■□□□ 1.19
COPS3-212ENST00000539941 NUTM2FA1L443 756 aa22.47■■□□□ 1.19
COPS3-212ENST00000539941 HSPA1LP34931 641 aa22.47■■□□□ 1.19
COPS3-212ENST00000539941 SHPRHQ149N8 1683 aa22.47■■□□□ 1.19
COPS3-212ENST00000539941 SSH2Q76I76 1423 aa22.45■■□□□ 1.19
COPS3-212ENST00000539941 TTC21BQ7Z4L5 1316 aa22.45■■□□□ 1.18
COPS3-212ENST00000539941 PROSER2Q86WR7 435 aaPredicted RBP22.45■■□□□ 1.18
COPS3-212ENST00000539941 TTC21AQ8NDW8 1320 aa22.44■■□□□ 1.18
COPS3-212ENST00000539941 NCOA3Q9Y6Q9 1424 aa22.44■■□□□ 1.18
COPS3-212ENST00000539941 NME9Q86XW9 330 aa22.44■■□□□ 1.18
COPS3-212ENST00000539941 RBM33Q96EV2 1170 aaKnown RBP22.44■■□□□ 1.18
COPS3-212ENST00000539941 TMEM94Q12767 1356 aa22.44■■□□□ 1.18
COPS3-212ENST00000539941 AATKQ6ZMQ8 1374 aa22.44■■□□□ 1.18
COPS3-212ENST00000539941 COG3Q96JB2 828 aa22.43■■□□□ 1.18
COPS3-212ENST00000539941 NGDNQ8NEJ9 315 aaKnown RBP22.42■■□□□ 1.18
COPS3-212ENST00000539941 XIRP1Q702N8 1843 aaKnown RBP22.42■■□□□ 1.18
COPS3-212ENST00000539941 PNPLA6Q8IY17 1366 aa22.41■■□□□ 1.18
COPS3-212ENST00000539941 COL3A1P02461 1466 aaPredicted RBP22.4■■□□□ 1.18
COPS3-212ENST00000539941 PDE3BQ13370 1112 aa22.4■■□□□ 1.18
COPS3-212ENST00000539941 C14orf37Q86TY3 774 aa22.4■■□□□ 1.18
COPS3-212ENST00000539941 PMFBP1Q8TBY8 1022 aa22.4■■□□□ 1.18
COPS3-212ENST00000539941 SMG6Q86US8 1419 aaKnown RBP22.4■■□□□ 1.18
COPS3-212ENST00000539941 OVOS2A0A0J9YW53 1432 aa22.39■■□□□ 1.18
COPS3-212ENST00000539941 OVOS2Q6IE36 1432 aa22.39■■□□□ 1.18
COPS3-212ENST00000539941 NGEFQ8N5V2 710 aa22.39■■□□□ 1.17
COPS3-212ENST00000539941 MAP2P11137 1827 aaKnown RBP22.37■■□□□ 1.17
COPS3-212ENST00000539941 DCCP43146 1447 aa22.37■■□□□ 1.17
COPS3-212ENST00000539941 C19orf44Q9H6X5 657 aa22.36■■□□□ 1.17
COPS3-212ENST00000539941 PHF8Q9UPP1 1060 aa22.36■■□□□ 1.17
COPS3-212ENST00000539941 NUDCQ9Y266 331 aa22.36■■□□□ 1.17
COPS3-212ENST00000539941 USP31Q70CQ4 1352 aa22.36■■□□□ 1.17
COPS3-212ENST00000539941 POLKQ9UBT6 870 aa22.36■■□□□ 1.17
COPS3-212ENST00000539941 CDK12Q9NYV4 1490 aaPredicted RBP22.35■■□□□ 1.17
COPS3-212ENST00000539941 ZRANB1Q9UGI0 708 aa22.34■■□□□ 1.17
COPS3-212ENST00000539941 USP54Q70EL1 1684 aa22.34■■□□□ 1.17
COPS3-212ENST00000539941 PIK3C2AO00443 1686 aa22.31■■□□□ 1.16
COPS3-212ENST00000539941 DIAPH1O60610 1272 aaKnown RBP22.31■■□□□ 1.16
COPS3-212ENST00000539941 RUNDC1Q96C34 613 aa22.31■■□□□ 1.16
COPS3-212ENST00000539941 SUPT16HQ9Y5B9 1047 aaKnown RBP22.3■■□□□ 1.16
COPS3-212ENST00000539941 KIF1AQ12756 1690 aa22.3■■□□□ 1.16
COPS3-212ENST00000539941 ILDR2Q71H61 639 aa22.3■■□□□ 1.16
COPS3-212ENST00000539941 CCDC146Q8IYE0 955 aa22.3■■□□□ 1.16
COPS3-212ENST00000539941 NCBP3Q53F19 620 aaKnown RBP22.29■■□□□ 1.16
COPS3-212ENST00000539941 ESCO1Q5FWF5 840 aa22.29■■□□□ 1.16
COPS3-212ENST00000539941 U2AF1L5P0DN76 240 aaPredicted RBP22.28■■□□□ 1.16
COPS3-212ENST00000539941 U2AF1Q01081 240 aaKnown RBP eCLIP22.28■■□□□ 1.16
COPS3-212ENST00000539941 SALL2Q9Y467 1007 aaPredicted RBP22.28■■□□□ 1.16
COPS3-212ENST00000539941 C1orf167Q5SNV9 1468 aa22.28■■□□□ 1.16
COPS3-212ENST00000539941 ZNF521Q96K83 1311 aa22.27■■□□□ 1.16
COPS3-212ENST00000539941 SENP3-EIF4A1A0A087X0R7 540 aa22.27■■□□□ 1.16
COPS3-212ENST00000539941 APAF1O14727 1248 aa22.27■■□□□ 1.16
COPS3-212ENST00000539941 MSH6P52701 1360 aa22.27■■□□□ 1.16
COPS3-212ENST00000539941 TSHZ2Q9NRE2 1034 aa22.26■■□□□ 1.15
COPS3-212ENST00000539941 SLAIN2Q9P270 581 aa22.26■■□□□ 1.15
COPS3-212ENST00000539941 EMILIN1Q9Y6C2 1016 aa22.26■■□□□ 1.15
COPS3-212ENST00000539941 NEFLP07196 543 aa22.26■■□□□ 1.15
COPS3-212ENST00000539941 ATF3P18847 181 aa22.26■■□□□ 1.15
COPS3-212ENST00000539941 PNNQ9H307 717 aaKnown RBP22.26■■□□□ 1.15
COPS3-212ENST00000539941 FBLN1P23142 703 aa22.25■■□□□ 1.15
COPS3-212ENST00000539941 MST1RQ04912 1400 aa22.24■■□□□ 1.15
COPS3-212ENST00000539941 U2SURPO15042 1029 aaKnown RBP22.24■■□□□ 1.15
COPS3-212ENST00000539941 PPM1GO15355 546 aaPredicted RBP22.24■■□□□ 1.15
COPS3-212ENST00000539941 PSME1Q06323 249 aa22.23■■□□□ 1.15
COPS3-212ENST00000539941 CADPS2Q86UW7 1296 aa22.23■■□□□ 1.15
COPS3-212ENST00000539941 MARF1Q9Y4F3 1742 aaKnown RBP22.23■■□□□ 1.15
COPS3-212ENST00000539941 RRS1Q15050 365 aaKnown RBP22.23■■□□□ 1.15
COPS3-212ENST00000539941 NLRP6P59044 892 aa22.22■■□□□ 1.15
COPS3-212ENST00000539941 ABTB2Q8N961 1025 aa22.21■■□□□ 1.15
COPS3-212ENST00000539941 ORAI2Q96SN7 254 aa22.21■■□□□ 1.15
COPS3-212ENST00000539941 KIF24Q5T7B8 1368 aa22.21■■□□□ 1.15
COPS3-212ENST00000539941 FCHSD2O94868 740 aa22.2■■□□□ 1.15
COPS3-212ENST00000539941 IL13P35225 146 aa22.2■■□□□ 1.15
COPS3-212ENST00000539941 GOLGA2Q08379 1002 aa22.2■■□□□ 1.15
COPS3-212ENST00000539941 TCP11L2Q8N4U5 519 aa22.2■■□□□ 1.15
COPS3-212ENST00000539941 CCDC27Q2M243 656 aa22.2■■□□□ 1.14
COPS3-212ENST00000539941 PLEKHF1Q96S99 279 aa22.2■■□□□ 1.14
COPS3-212ENST00000539941 PAK3O75914 559 aaPredicted RBP22.19■■□□□ 1.14
COPS3-212ENST00000539941 SBNO1A3KN83 1393 aa22.18■■□□□ 1.14
COPS3-212ENST00000539941 PEAK1Q9H792 1746 aa22.18■■□□□ 1.14
COPS3-212ENST00000539941 CDCA7LQ96GN5 454 aa22.17■■□□□ 1.14
COPS3-212ENST00000539941 PHF23Q9BUL5 403 aaPredicted RBP22.17■■□□□ 1.14
COPS3-212ENST00000539941 TRPM3Q9HCF6 1732 aaPredicted RBP22.17■■□□□ 1.14
COPS3-212ENST00000539941 MAPK8IP3Q9UPT6 1336 aa22.16■■□□□ 1.14
COPS3-212ENST00000539941 FLT4P35916 1363 aa22.16■■□□□ 1.14
COPS3-212ENST00000539941 FOXO3O43524 673 aa22.16■■□□□ 1.14
COPS3-212ENST00000539941 MAP3K19Q56UN5 1328 aa22.16■■□□□ 1.14
COPS3-212ENST00000539941 ROBO1Q9Y6N7 1651 aa22.16■■□□□ 1.14
COPS3-212ENST00000539941 WWC1Q8IX03 1113 aa22.15■■□□□ 1.14
COPS3-212ENST00000539941 MED1Q15648 1581 aaPredicted RBP22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms