RNA–Protein interactions for RNA: ENST00000539687.5

SPARC-209, Transcript of secreted protein acidic and cysteine rich, humanhuman

TSL 5

Gene SPARC, Length 511 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPARC-209ENST00000539687 E9PSI1 815 aa13.36□□□□□ -0.27
SPARC-209ENST00000539687 RRP1P56182 461 aaKnown RBP13.36□□□□□ -0.27
SPARC-209ENST00000539687 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.36□□□□□ -0.27
SPARC-209ENST00000539687 ZNF142P52746 1687 aaPredicted RBP13.36□□□□□ -0.27
SPARC-209ENST00000539687 FYB1O15117 783 aa13.35□□□□□ -0.27
SPARC-209ENST00000539687 CEBPAP49715 358 aaPredicted RBP13.35□□□□□ -0.27
SPARC-209ENST00000539687 C1QBPQ07021 282 aaKnown RBP13.35□□□□□ -0.27
SPARC-209ENST00000539687 ITSN1Q15811 1721 aa13.34□□□□□ -0.27
SPARC-209ENST00000539687 LTKP29376 864 aa13.34□□□□□ -0.27
SPARC-209ENST00000539687 CCDC27Q2M243 656 aa13.34□□□□□ -0.27
SPARC-209ENST00000539687 NUDT16Q96DE0 195 aaKnown RBP13.34□□□□□ -0.27
SPARC-209ENST00000539687 SALL2Q9Y467 1007 aaPredicted RBP13.34□□□□□ -0.27
SPARC-209ENST00000539687 ROBO2Q9HCK4 1378 aa13.33□□□□□ -0.27
SPARC-209ENST00000539687 MON2Q7Z3U7 1717 aa13.33□□□□□ -0.27
SPARC-209ENST00000539687 APAF1O14727 1248 aa13.33□□□□□ -0.28
SPARC-209ENST00000539687 AATKQ6ZMQ8 1374 aa13.32□□□□□ -0.28
SPARC-209ENST00000539687 IQSEC2Q5JU85 1478 aa13.32□□□□□ -0.28
SPARC-209ENST00000539687 TNNT2P45379 298 aaPredicted RBP13.32□□□□□ -0.28
SPARC-209ENST00000539687 SLFN5Q08AF3 891 aa13.32□□□□□ -0.28
SPARC-209ENST00000539687 GGNBP2Q9H3C7 697 aa13.32□□□□□ -0.28
SPARC-209ENST00000539687 U3KPZ7 1027 aaPredicted RBP13.32□□□□□ -0.28
SPARC-209ENST00000539687 AKAP12Q02952 1782 aa13.32□□□□□ -0.28
SPARC-209ENST00000539687 PNPLA6Q8IY17 1366 aa13.32□□□□□ -0.28
SPARC-209ENST00000539687 TOPAZ1Q8N9V7 1692 aa13.31□□□□□ -0.28
SPARC-209ENST00000539687 NKTRP30414 1462 aaKnown RBP13.31□□□□□ -0.28
SPARC-209ENST00000539687 IRX6P78412 446 aaPredicted RBP13.31□□□□□ -0.28
SPARC-209ENST00000539687 WDR63Q8IWG1 891 aa13.31□□□□□ -0.28
SPARC-209ENST00000539687 CCDC146Q8IYE0 955 aa13.31□□□□□ -0.28
SPARC-209ENST00000539687 ANKARQ7Z5J8 1434 aa13.3□□□□□ -0.28
SPARC-209ENST00000539687 XRN1Q8IZH2 1706 aaKnown RBP13.3□□□□□ -0.28
SPARC-209ENST00000539687 COL3A1P02461 1466 aaPredicted RBP13.3□□□□□ -0.28
SPARC-209ENST00000539687 PLEKHG3A1L390 1219 aa13.3□□□□□ -0.28
SPARC-209ENST00000539687 NEFMP07197 916 aa13.3□□□□□ -0.28
SPARC-209ENST00000539687 DUSP27Q5VZP5 1158 aa13.3□□□□□ -0.28
SPARC-209ENST00000539687 ANKLE2Q86XL3 938 aa13.3□□□□□ -0.28
SPARC-209ENST00000539687 TRMT2AQ8IZ69 625 aaKnown RBP13.3□□□□□ -0.28
SPARC-209ENST00000539687 CDCA7LQ96GN5 454 aa13.3□□□□□ -0.28
SPARC-209ENST00000539687 AMOTL2Q9Y2J4 779 aa13.3□□□□□ -0.28
SPARC-209ENST00000539687 DIAPH1O60610 1272 aaKnown RBP13.29□□□□□ -0.28
SPARC-209ENST00000539687 U2AF1L5P0DN76 240 aaPredicted RBP13.29□□□□□ -0.28
SPARC-209ENST00000539687 U2AF1Q01081 240 aaKnown RBP eCLIP13.29□□□□□ -0.28
SPARC-209ENST00000539687 COG3Q96JB2 828 aa13.29□□□□□ -0.28
SPARC-209ENST00000539687 MAPK8IP3Q9UPT6 1336 aa13.29□□□□□ -0.28
SPARC-209ENST00000539687 PTPRUQ92729 1446 aa13.29□□□□□ -0.28
SPARC-209ENST00000539687 CDK12Q9NYV4 1490 aaPredicted RBP13.29□□□□□ -0.28
SPARC-209ENST00000539687 CCDC136Q96JN2 1154 aa13.28□□□□□ -0.28
SPARC-209ENST00000539687 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.27□□□□□ -0.28
SPARC-209ENST00000539687 WWC1Q8IX03 1113 aa13.27□□□□□ -0.29
SPARC-209ENST00000539687 SLC26A8Q96RN1 970 aa13.27□□□□□ -0.29
SPARC-209ENST00000539687 CT47B1P0C2W7 299 aaPredicted RBP13.26□□□□□ -0.29
SPARC-209ENST00000539687 TCP11L2Q8N4U5 519 aa13.26□□□□□ -0.29
SPARC-209ENST00000539687 TTC21AQ8NDW8 1320 aa13.26□□□□□ -0.29
SPARC-209ENST00000539687 MYH16Q9H6N6 1097 aa13.26□□□□□ -0.29
SPARC-209ENST00000539687 SETD1BQ9UPS6 1966 aaKnown RBP13.25□□□□□ -0.29
SPARC-209ENST00000539687 LTBP4Q8N2S1 1624 aa13.25□□□□□ -0.29
SPARC-209ENST00000539687 NRKQ7Z2Y5 1582 aa13.25□□□□□ -0.29
SPARC-209ENST00000539687 FCHSD2O94868 740 aa13.25□□□□□ -0.29
SPARC-209ENST00000539687 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.25□□□□□ -0.29
SPARC-209ENST00000539687 USP6P35125 1406 aa13.24□□□□□ -0.29
SPARC-209ENST00000539687 PRR36Q9H6K5 1346 aa13.24□□□□□ -0.29
SPARC-209ENST00000539687 U2SURPO15042 1029 aaKnown RBP13.24□□□□□ -0.29
SPARC-209ENST00000539687 LRRC7Q96NW7 1537 aa13.23□□□□□ -0.29
SPARC-209ENST00000539687 IL16Q14005 1332 aa13.23□□□□□ -0.29
SPARC-209ENST00000539687 SENP3-EIF4A1A0A087X0R7 540 aa13.23□□□□□ -0.29
SPARC-209ENST00000539687 CALD1Q05682 793 aaKnown RBP13.23□□□□□ -0.29
SPARC-209ENST00000539687 TTC21BQ7Z4L5 1316 aa13.22□□□□□ -0.29
SPARC-209ENST00000539687 B4GALNT3Q6L9W6 998 aa13.22□□□□□ -0.29
SPARC-209ENST00000539687 POLKQ9UBT6 870 aa13.22□□□□□ -0.29
SPARC-209ENST00000539687 ACEP12821 1306 aa13.21□□□□□ -0.29
SPARC-209ENST00000539687 AAMPQ13685 434 aa13.21□□□□□ -0.29
SPARC-209ENST00000539687 PLEKHF1Q96S99 279 aa13.21□□□□□ -0.29
SPARC-209ENST00000539687 TSHZ2Q9NRE2 1034 aa13.21□□□□□ -0.29
SPARC-209ENST00000539687 OVOS2A0A0J9YW53 1432 aa13.21□□□□□ -0.3
SPARC-209ENST00000539687 OVOS2Q6IE36 1432 aa13.21□□□□□ -0.3
SPARC-209ENST00000539687 LMOD3Q0VAK6 560 aa13.2□□□□□ -0.3
SPARC-209ENST00000539687 NME9Q86XW9 330 aa13.2□□□□□ -0.3
SPARC-209ENST00000539687 NPHP4O75161 1426 aaPredicted RBP13.2□□□□□ -0.3
SPARC-209ENST00000539687 SSH2Q76I76 1423 aa13.2□□□□□ -0.3
SPARC-209ENST00000539687 USP31Q70CQ4 1352 aa13.2□□□□□ -0.3
SPARC-209ENST00000539687 FMN2Q9NZ56 1722 aa13.19□□□□□ -0.3
SPARC-209ENST00000539687 CHD2O14647 1828 aaKnown RBP13.19□□□□□ -0.3
SPARC-209ENST00000539687 TMPOP42166 694 aaKnown RBP13.19□□□□□ -0.3
SPARC-209ENST00000539687 NALCNQ8IZF0 1738 aa13.19□□□□□ -0.3
SPARC-209ENST00000539687 KIF24Q5T7B8 1368 aa13.19□□□□□ -0.3
SPARC-209ENST00000539687 MS4A1P11836 297 aa13.18□□□□□ -0.3
SPARC-209ENST00000539687 PDE3AQ14432 1141 aa13.18□□□□□ -0.3
SPARC-209ENST00000539687 KCNA6P17658 529 aa13.17□□□□□ -0.3
SPARC-209ENST00000539687 NGDNQ8NEJ9 315 aaKnown RBP13.17□□□□□ -0.3
SPARC-209ENST00000539687 MAP2P11137 1827 aaKnown RBP13.17□□□□□ -0.3
SPARC-209ENST00000539687 NWD1Q149M9 1564 aa13.16□□□□□ -0.3
SPARC-209ENST00000539687 PPM1GO15355 546 aaPredicted RBP13.16□□□□□ -0.3
SPARC-209ENST00000539687 IL13P35225 146 aa13.16□□□□□ -0.3
SPARC-209ENST00000539687 NEUROD2Q15784 382 aa13.16□□□□□ -0.3
SPARC-209ENST00000539687 EXOC6Q8TAG9 804 aa13.16□□□□□ -0.3
SPARC-209ENST00000539687 ZNF428Q96B54 188 aa13.16□□□□□ -0.3
SPARC-209ENST00000539687 RSPH6AQ9H0K4 717 aa13.16□□□□□ -0.3
SPARC-209ENST00000539687 USP54Q70EL1 1684 aa13.15□□□□□ -0.3
SPARC-209ENST00000539687 ADGRL3Q9HAR2 1447 aa13.15□□□□□ -0.3
SPARC-209ENST00000539687 UBAP1LF5GYI3 381 aa13.15□□□□□ -0.3
SPARC-209ENST00000539687 CANXP27824 592 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms