RNA–Protein interactions for RNA: ENST00000539548.6

CDH13-204, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 2,199 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-204ENST00000539548 CD109Q6YHK3 1445 aa12.25□□□□□ -0.45
CDH13-204ENST00000539548 TSR2Q969E8 191 aaKnown RBP12.25□□□□□ -0.45
CDH13-204ENST00000539548 CABP2Q9NPB3 220 aa12.25□□□□□ -0.45
CDH13-204ENST00000539548 ANKRD26Q9UPS8 1709 aa12.24□□□□□ -0.45
CDH13-204ENST00000539548 TRIM27P14373 513 aa12.24□□□□□ -0.45
CDH13-204ENST00000539548 FAM69CQ0P6D2 419 aa12.24□□□□□ -0.45
CDH13-204ENST00000539548 ATF7IPQ6VMQ6 1270 aa12.24□□□□□ -0.45
CDH13-204ENST00000539548 SMC5Q8IY18 1101 aa12.24□□□□□ -0.45
CDH13-204ENST00000539548 SSH1Q8WYL5 1049 aa12.24□□□□□ -0.45
CDH13-204ENST00000539548 C22orf23Q9BZE7 217 aa12.24□□□□□ -0.45
CDH13-204ENST00000539548 MED14O60244 1454 aa12.23□□□□□ -0.45
CDH13-204ENST00000539548 ZFYVE9O95405 1425 aa12.23□□□□□ -0.45
CDH13-204ENST00000539548 A0A1W2PP64 1363 aa12.23□□□□□ -0.45
CDH13-204ENST00000539548 U2SURPO15042 1029 aaKnown RBP12.22□□□□□ -0.45
CDH13-204ENST00000539548 NPM1P06748 294 aaKnown RBP eCLIP12.22□□□□□ -0.45
CDH13-204ENST00000539548 CHMP5Q9NZZ3 219 aa12.22□□□□□ -0.45
CDH13-204ENST00000539548 MCM4P33991 863 aa12.21□□□□□ -0.45
CDH13-204ENST00000539548 ITPRIPQ8IWB1 547 aa12.21□□□□□ -0.45
CDH13-204ENST00000539548 PNNQ9H307 717 aaKnown RBP12.21□□□□□ -0.45
CDH13-204ENST00000539548 ZBTB40Q9NUA8 1239 aa12.21□□□□□ -0.45
CDH13-204ENST00000539548 NOB1Q9ULX3 412 aaKnown RBP12.21□□□□□ -0.45
CDH13-204ENST00000539548 IPO8O15397 1037 aaKnown RBP12.2□□□□□ -0.46
CDH13-204ENST00000539548 ARHGAP31Q2M1Z3 1444 aa12.2□□□□□ -0.46
CDH13-204ENST00000539548 FYB1O15117 783 aa12.2□□□□□ -0.46
CDH13-204ENST00000539548 MFAP1P55081 439 aaKnown RBP12.2□□□□□ -0.46
CDH13-204ENST00000539548 NUTM2DQ5VT03 806 aaPredicted RBP12.2□□□□□ -0.46
CDH13-204ENST00000539548 GGNBP2Q9H3C7 697 aa12.2□□□□□ -0.46
CDH13-204ENST00000539548 TERF2IPQ9NYB0 399 aa12.2□□□□□ -0.46
CDH13-204ENST00000539548 DIP2BQ9P265 1576 aa12.2□□□□□ -0.46
CDH13-204ENST00000539548 KIF16BQ96L93 1317 aa12.2□□□□□ -0.46
CDH13-204ENST00000539548 CLTCQ00610 1675 aaKnown RBP12.2□□□□□ -0.46
CDH13-204ENST00000539548 RIPK4P57078 832 aa12.19□□□□□ -0.46
CDH13-204ENST00000539548 ALDH1L2Q3SY69 923 aa12.19□□□□□ -0.46
CDH13-204ENST00000539548 TMEM57Q8N5G2 664 aa12.19□□□□□ -0.46
CDH13-204ENST00000539548 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.19□□□□□ -0.46
CDH13-204ENST00000539548 ATAD2Q6PL18 1390 aa12.19□□□□□ -0.46
CDH13-204ENST00000539548 SRPK2P78362 688 aaKnown RBP12.19□□□□□ -0.46
CDH13-204ENST00000539548 PNPLA6Q8IY17 1366 aa12.19□□□□□ -0.46
CDH13-204ENST00000539548 FSD2A1L4K1 749 aa12.18□□□□□ -0.46
CDH13-204ENST00000539548 NUCB1Q02818 461 aa12.18□□□□□ -0.46
CDH13-204ENST00000539548 DIAPH1O60610 1272 aaKnown RBP12.18□□□□□ -0.46
CDH13-204ENST00000539548 BRPF1P55201 1214 aaPredicted RBP12.18□□□□□ -0.46
CDH13-204ENST00000539548 SPRYD3Q8NCJ5 442 aa12.18□□□□□ -0.46
CDH13-204ENST00000539548 RSPH6AQ9H0K4 717 aa12.18□□□□□ -0.46
CDH13-204ENST00000539548 PTPRMP28827 1452 aa12.17□□□□□ -0.46
CDH13-204ENST00000539548 CD163L1Q9NR16 1453 aa12.17□□□□□ -0.46
CDH13-204ENST00000539548 RBM25P49756 843 aaKnown RBP12.17□□□□□ -0.46
CDH13-204ENST00000539548 IDI1Q13907 227 aa12.17□□□□□ -0.46
CDH13-204ENST00000539548 SAFB2Q14151 953 aaKnown RBP eCLIP12.17□□□□□ -0.46
CDH13-204ENST00000539548 ZNF428Q96B54 188 aa12.17□□□□□ -0.46
CDH13-204ENST00000539548 SLC52A1Q9NWF4 448 aa12.17□□□□□ -0.46
CDH13-204ENST00000539548 GOLGA6L3A6NEY3 463 aa12.16□□□□□ -0.46
CDH13-204ENST00000539548 SNX21Q969T3 373 aa12.16□□□□□ -0.46
CDH13-204ENST00000539548 CDC42BPGQ6DT37 1551 aa12.16□□□□□ -0.46
CDH13-204ENST00000539548 FCHSD2O94868 740 aa12.16□□□□□ -0.46
CDH13-204ENST00000539548 XRCC6P12956 609 aaKnown RBP eCLIP12.16□□□□□ -0.46
CDH13-204ENST00000539548 HSCBQ8IWL3 235 aa12.16□□□□□ -0.46
CDH13-204ENST00000539548 ZNF692Q9BU19 519 aaPredicted RBP12.16□□□□□ -0.46
CDH13-204ENST00000539548 STK26Q9P289 416 aa12.16□□□□□ -0.46
CDH13-204ENST00000539548 NCOA3Q9Y6Q9 1424 aa12.16□□□□□ -0.46
CDH13-204ENST00000539548 MYO5BQ9ULV0 1848 aa12.16□□□□□ -0.46
CDH13-204ENST00000539548 TRAK2O60296 914 aa12.15□□□□□ -0.46
CDH13-204ENST00000539548 KIF20BQ96Q89 1820 aa12.15□□□□□ -0.46
CDH13-204ENST00000539548 DDIT3P35638 169 aa12.15□□□□□ -0.47
CDH13-204ENST00000539548 CHD1LQ86WJ1 897 aa12.15□□□□□ -0.47
CDH13-204ENST00000539548 DIP2CQ9Y2E4 1556 aa12.14□□□□□ -0.47
CDH13-204ENST00000539548 PPIP5K1Q6PFW1 1433 aa12.14□□□□□ -0.47
CDH13-204ENST00000539548 TSPOAP1O95153 1857 aa12.14□□□□□ -0.47
CDH13-204ENST00000539548 NEO1Q92859 1461 aa12.14□□□□□ -0.47
CDH13-204ENST00000539548 HDGFL2Q7Z4V5 671 aaPredicted RBP12.14□□□□□ -0.47
CDH13-204ENST00000539548 CHMP4BQ9H444 224 aaKnown RBP12.14□□□□□ -0.47
CDH13-204ENST00000539548 TMEM131LA2VDJ0 1609 aa12.14□□□□□ -0.47
CDH13-204ENST00000539548 KDM4FA0A1W2PPD8 638 aa12.13□□□□□ -0.47
CDH13-204ENST00000539548 BMP2KLQ5H9B9 411 aa12.13□□□□□ -0.47
CDH13-204ENST00000539548 MINK1Q8N4C8 1332 aaPredicted RBP12.13□□□□□ -0.47
CDH13-204ENST00000539548 YTHDC2Q9H6S0 1430 aaKnown RBP12.13□□□□□ -0.47
CDH13-204ENST00000539548 DDX11L8A8MPP1 907 aa12.13□□□□□ -0.47
CDH13-204ENST00000539548 ARHGAP45Q92619 1136 aa12.13□□□□□ -0.47
CDH13-204ENST00000539548 PRAM1Q96QH2 718 aa12.13□□□□□ -0.47
CDH13-204ENST00000539548 RRAGDQ9NQL2 400 aaPredicted RBP12.13□□□□□ -0.47
CDH13-204ENST00000539548 GCC1Q96CN9 775 aa12.12□□□□□ -0.47
CDH13-204ENST00000539548 LNPKQ9C0E8 428 aa12.12□□□□□ -0.47
CDH13-204ENST00000539548 CIZ1Q9ULV3 898 aaPredicted RBP12.12□□□□□ -0.47
CDH13-204ENST00000539548 FAM135BQ49AJ0 1406 aa12.12□□□□□ -0.47
CDH13-204ENST00000539548 LRRC7Q96NW7 1537 aa12.12□□□□□ -0.47
CDH13-204ENST00000539548 ZBTB7BO15156 539 aaPredicted RBP12.12□□□□□ -0.47
CDH13-204ENST00000539548 PIK3R4Q99570 1358 aa12.12□□□□□ -0.47
CDH13-204ENST00000539548 PREX1Q8TCU6 1659 aa12.11□□□□□ -0.47
CDH13-204ENST00000539548 PRKCSHP14314 528 aaPredicted RBP12.11□□□□□ -0.47
CDH13-204ENST00000539548 CDK19Q9BWU1 502 aa12.11□□□□□ -0.47
CDH13-204ENST00000539548 ISY1Q9ULR0 285 aaKnown RBP12.11□□□□□ -0.47
CDH13-204ENST00000539548 ARHGEF40Q8TER5 1519 aa12.11□□□□□ -0.47
CDH13-204ENST00000539548 RAPGEF3O95398 923 aa12.11□□□□□ -0.47
CDH13-204ENST00000539548 MRE11P49959 708 aa12.11□□□□□ -0.47
CDH13-204ENST00000539548 MRPL50Q8N5N7 158 aaKnown RBP12.11□□□□□ -0.47
CDH13-204ENST00000539548 GZF1Q9H116 711 aaPredicted RBP12.11□□□□□ -0.47
CDH13-204ENST00000539548 VAMP4O75379 141 aa12.1□□□□□ -0.47
CDH13-204ENST00000539548 PRKAR2BP31323 418 aa12.1□□□□□ -0.47
CDH13-204ENST00000539548 CALD1Q05682 793 aaKnown RBP12.1□□□□□ -0.47
CDH13-204ENST00000539548 PTCH1Q13635 1447 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms