RNA–Protein interactions for RNA: ENST00000539148.3

CLPB-210, Transcript of ClpB homolog, mitochondrial AAA ATPase chaperonin, human

TSL 5

Gene CLPB, Length 564 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLPB-210	ENST00000539148	NSD3	Q9BZ95	1437 aa		13.93	□□□□□ -0.18
CLPB-210	ENST00000539148	PAK3	O75914	559 aa	Predicted RBP	13.93	□□□□□ -0.18
CLPB-210	ENST00000539148	CENPB	P07199	599 aa	Predicted RBP	13.93	□□□□□ -0.18
CLPB-210	ENST00000539148	NPC1L1	Q9UHC9	1359 aa		13.93	□□□□□ -0.18
CLPB-210	ENST00000539148	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.93	□□□□□ -0.18
CLPB-210	ENST00000539148	CD163L1	Q9NR16	1453 aa		13.93	□□□□□ -0.18
CLPB-210	ENST00000539148	PHLPP1	O60346	1717 aa		13.93	□□□□□ -0.18
CLPB-210	ENST00000539148	PIP4K2B	P78356	416 aa		13.92	□□□□□ -0.18
CLPB-210	ENST00000539148	SBNO1	A3KN83	1393 aa		13.92	□□□□□ -0.18
CLPB-210	ENST00000539148	ARHGEF10	O15013	1369 aa		13.92	□□□□□ -0.18
CLPB-210	ENST00000539148	NRK	Q7Z2Y5	1582 aa		13.92	□□□□□ -0.18
CLPB-210	ENST00000539148	LRRC59	Q96AG4	307 aa	Known RBP	13.91	□□□□□ -0.18
CLPB-210	ENST00000539148	MED1	Q15648	1581 aa	Predicted RBP	13.91	□□□□□ -0.18
CLPB-210	ENST00000539148	ANP32C	O43423	234 aa		13.9	□□□□□ -0.18
CLPB-210	ENST00000539148	HSPA1L	P34931	641 aa		13.9	□□□□□ -0.18
CLPB-210	ENST00000539148	NLRP13	Q86W25	1043 aa		13.9	□□□□□ -0.18
CLPB-210	ENST00000539148	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.9	□□□□□ -0.18
CLPB-210	ENST00000539148	SOS2	Q07890	1332 aa	Predicted RBP	13.9	□□□□□ -0.19
CLPB-210	ENST00000539148	TTC21B	Q7Z4L5	1316 aa		13.9	□□□□□ -0.19
CLPB-210	ENST00000539148	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
CLPB-210	ENST00000539148	ABTB2	Q8N961	1025 aa		13.89	□□□□□ -0.19
CLPB-210	ENST00000539148	COG3	Q96JB2	828 aa		13.89	□□□□□ -0.19
CLPB-210	ENST00000539148	PXDN	Q92626	1479 aa		13.88	□□□□□ -0.19
CLPB-210	ENST00000539148	PER1	O15534	1290 aa	Predicted RBP	13.88	□□□□□ -0.19
CLPB-210	ENST00000539148	RALBP1	Q15311	655 aa		13.88	□□□□□ -0.19
CLPB-210	ENST00000539148	CARD14	Q9BXL6	1004 aa		13.88	□□□□□ -0.19
CLPB-210	ENST00000539148	TNS3	Q68CZ2	1445 aa		13.88	□□□□□ -0.19
CLPB-210	ENST00000539148	USP54	Q70EL1	1684 aa		13.88	□□□□□ -0.19
CLPB-210	ENST00000539148	LMOD2	Q6P5Q4	547 aa		13.87	□□□□□ -0.19
CLPB-210	ENST00000539148	ALS2	Q96Q42	1657 aa		13.87	□□□□□ -0.19
CLPB-210	ENST00000539148	NLRP6	P59044	892 aa		13.86	□□□□□ -0.19
CLPB-210	ENST00000539148	MORC1	Q86VD1	984 aa		13.86	□□□□□ -0.19
CLPB-210	ENST00000539148	KCNH5	Q8NCM2	988 aa		13.86	□□□□□ -0.19
CLPB-210	ENST00000539148	SSH2	Q76I76	1423 aa		13.86	□□□□□ -0.19
CLPB-210	ENST00000539148	SPATA31A3	Q5VYP0	1347 aa		13.86	□□□□□ -0.19
CLPB-210	ENST00000539148	USP31	Q70CQ4	1352 aa		13.85	□□□□□ -0.19
CLPB-210	ENST00000539148	FYB1	O15117	783 aa		13.85	□□□□□ -0.19
CLPB-210	ENST00000539148	PIK3C2A	O00443	1686 aa		13.85	□□□□□ -0.19
CLPB-210	ENST00000539148	HAP1	P54257	671 aa	Predicted RBP	13.84	□□□□□ -0.19
CLPB-210	ENST00000539148	XPC	Q01831	940 aa	Predicted RBP	13.84	□□□□□ -0.19
CLPB-210	ENST00000539148	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.84	□□□□□ -0.19
CLPB-210	ENST00000539148	COL16A1	Q07092	1604 aa	Predicted RBP	13.83	□□□□□ -0.2
CLPB-210	ENST00000539148	CC2D1B	Q5T0F9	858 aa	Known RBP	13.83	□□□□□ -0.2
CLPB-210	ENST00000539148	MAP2	P11137	1827 aa	Known RBP	13.83	□□□□□ -0.2
CLPB-210	ENST00000539148	NME9	Q86XW9	330 aa		13.82	□□□□□ -0.2
CLPB-210	ENST00000539148	GGNBP2	Q9H3C7	697 aa		13.82	□□□□□ -0.2
CLPB-210	ENST00000539148	SHPRH	Q149N8	1683 aa		13.82	□□□□□ -0.2
CLPB-210	ENST00000539148	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.81	□□□□□ -0.2
CLPB-210	ENST00000539148	OVOS2	A0A0J9YW53	1432 aa		13.81	□□□□□ -0.2
CLPB-210	ENST00000539148	OVOS2	Q6IE36	1432 aa		13.81	□□□□□ -0.2
CLPB-210	ENST00000539148	DDX17	Q92841	729 aa	Known RBP	13.8	□□□□□ -0.2
CLPB-210	ENST00000539148	JCAD	Q9P266	1359 aa		13.8	□□□□□ -0.2
CLPB-210	ENST00000539148	CFAP53	Q96M91	514 aa		13.79	□□□□□ -0.2
CLPB-210	ENST00000539148	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.79	□□□□□ -0.2
CLPB-210	ENST00000539148	KIF24	Q5T7B8	1368 aa		13.79	□□□□□ -0.2
CLPB-210	ENST00000539148	AATK	Q6ZMQ8	1374 aa		13.79	□□□□□ -0.2
CLPB-210	ENST00000539148	PARD3	Q8TEW0	1356 aa		13.79	□□□□□ -0.2
CLPB-210	ENST00000539148	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.79	□□□□□ -0.2
CLPB-210	ENST00000539148	MIER1	Q8N108	512 aa		13.78	□□□□□ -0.2
CLPB-210	ENST00000539148	PHF23	Q9BUL5	403 aa	Predicted RBP	13.78	□□□□□ -0.2
CLPB-210	ENST00000539148	SPATA31A6	Q5VVP1	1343 aa		13.78	□□□□□ -0.2
CLPB-210	ENST00000539148	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.78	□□□□□ -0.2
CLPB-210	ENST00000539148	LTN1	O94822	1766 aa		13.78	□□□□□ -0.2
CLPB-210	ENST00000539148	SLIT3	O75094	1523 aa		13.77	□□□□□ -0.21
CLPB-210	ENST00000539148	USP19	O94966	1318 aa		13.77	□□□□□ -0.21
CLPB-210	ENST00000539148	CNGB1	Q14028	1251 aa	Predicted RBP	13.77	□□□□□ -0.21
CLPB-210	ENST00000539148	MARF1	Q9Y4F3	1742 aa	Known RBP	13.76	□□□□□ -0.21
CLPB-210	ENST00000539148	PNPLA6	Q8IY17	1366 aa		13.76	□□□□□ -0.21
CLPB-210	ENST00000539148	GC	P02774	474 aa		13.76	□□□□□ -0.21
CLPB-210	ENST00000539148	NUTM2G	Q5VZR2	741 aa		13.76	□□□□□ -0.21
CLPB-210	ENST00000539148	ABCA3	Q99758	1704 aa		13.76	□□□□□ -0.21
CLPB-210	ENST00000539148	CRYBG1	Q9Y4K1	1723 aa		13.76	□□□□□ -0.21
CLPB-210	ENST00000539148	ABCC6	O95255	1503 aa		13.75	□□□□□ -0.21
CLPB-210	ENST00000539148	RTL1	A6NKG5	1358 aa		13.74	□□□□□ -0.21
CLPB-210	ENST00000539148	TNNT2	P45379	298 aa	Predicted RBP	13.74	□□□□□ -0.21
CLPB-210	ENST00000539148	AMPH	P49418	695 aa		13.74	□□□□□ -0.21
CLPB-210	ENST00000539148	CPD	O75976	1380 aa		13.72	□□□□□ -0.21
CLPB-210	ENST00000539148	CCER2	I3L3R5	266 aa		13.72	□□□□□ -0.21
CLPB-210	ENST00000539148	SOX12	O15370	315 aa		13.72	□□□□□ -0.21
CLPB-210	ENST00000539148	PPP2R1A	P30153	589 aa		13.72	□□□□□ -0.21
CLPB-210	ENST00000539148	NUDC	Q9Y266	331 aa		13.72	□□□□□ -0.21
CLPB-210	ENST00000539148	SMG6	Q86US8	1419 aa	Known RBP	13.72	□□□□□ -0.21
CLPB-210	ENST00000539148	FLT4	P35916	1363 aa		13.71	□□□□□ -0.21
CLPB-210	ENST00000539148	NFAT5	O94916	1531 aa		13.71	□□□□□ -0.21
CLPB-210	ENST00000539148	PPM1G	O15355	546 aa	Predicted RBP	13.71	□□□□□ -0.21
CLPB-210	ENST00000539148	PRDM11	Q9NQV5	511 aa		13.71	□□□□□ -0.21
CLPB-210	ENST00000539148	ZRANB1	Q9UGI0	708 aa		13.71	□□□□□ -0.21
CLPB-210	ENST00000539148	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.71	□□□□□ -0.21
CLPB-210	ENST00000539148	COL14A1	Q05707	1796 aa	Known RBP	13.71	□□□□□ -0.22
CLPB-210	ENST00000539148	FAM208A	Q9UK61	1670 aa	Known RBP	13.7	□□□□□ -0.22
CLPB-210	ENST00000539148	MTHFS	P49914	203 aa		13.7	□□□□□ -0.22
CLPB-210	ENST00000539148	BLM	P54132	1417 aa	Predicted RBP	13.7	□□□□□ -0.22
CLPB-210	ENST00000539148	PLEKHG5	O94827	1062 aa		13.69	□□□□□ -0.22
CLPB-210	ENST00000539148	ARHGEF25	Q86VW2	580 aa		13.69	□□□□□ -0.22
CLPB-210	ENST00000539148	POLK	Q9UBT6	870 aa		13.69	□□□□□ -0.22
CLPB-210	ENST00000539148	MAP3K19	Q56UN5	1328 aa		13.68	□□□□□ -0.22
CLPB-210	ENST00000539148	NWD2	Q9ULI1	1742 aa		13.68	□□□□□ -0.22
CLPB-210	ENST00000539148	ZBTB7C	A1YPR0	619 aa		13.68	□□□□□ -0.22
CLPB-210	ENST00000539148	ZC3H6	P61129	1189 aa	Known RBP	13.68	□□□□□ -0.22
CLPB-210	ENST00000539148	MEX3C	Q5U5Q3	659 aa	Known RBP	13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms