RNA–Protein interactions for RNA: ENST00000538696.5

CLN6-202, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-202ENST00000538696 PANK3Q9H999 370 aa23.71■■□□□ 1.39
CLN6-202ENST00000538696 SOS2Q07890 1332 aaPredicted RBP23.7■■□□□ 1.39
CLN6-202ENST00000538696 PIK3C2AO00443 1686 aa23.7■■□□□ 1.38
CLN6-202ENST00000538696 NSD3Q9BZ95 1437 aa23.7■■□□□ 1.38
CLN6-202ENST00000538696 PSME1Q06323 249 aa23.7■■□□□ 1.38
CLN6-202ENST00000538696 KRT28Q7Z3Y7 464 aa23.7■■□□□ 1.38
CLN6-202ENST00000538696 CARD14Q9BXL6 1004 aa23.69■■□□□ 1.38
CLN6-202ENST00000538696 MARF1Q9Y4F3 1742 aaKnown RBP23.68■■□□□ 1.38
CLN6-202ENST00000538696 SBNO1A3KN83 1393 aa23.68■■□□□ 1.38
CLN6-202ENST00000538696 BRD4O60885 1362 aaPredicted RBP23.68■■□□□ 1.38
CLN6-202ENST00000538696 USP54Q70EL1 1684 aa23.67■■□□□ 1.38
CLN6-202ENST00000538696 TNS3Q68CZ2 1445 aa23.67■■□□□ 1.38
CLN6-202ENST00000538696 ANKRD26Q9UPS8 1709 aa23.66■■□□□ 1.38
CLN6-202ENST00000538696 TTC21BQ7Z4L5 1316 aa23.66■■□□□ 1.38
CLN6-202ENST00000538696 FBXO41Q8TF61 875 aa23.64■■□□□ 1.38
CLN6-202ENST00000538696 CRYBG1Q9Y4K1 1723 aa23.63■■□□□ 1.37
CLN6-202ENST00000538696 ABCA3Q99758 1704 aa23.63■■□□□ 1.37
CLN6-202ENST00000538696 SHPRHQ149N8 1683 aa23.62■■□□□ 1.37
CLN6-202ENST00000538696 SPATA31A3Q5VYP0 1347 aa23.62■■□□□ 1.37
CLN6-202ENST00000538696 TTC21AQ8NDW8 1320 aa23.62■■□□□ 1.37
CLN6-202ENST00000538696 COL22A1Q8NFW1 1626 aaPredicted RBP23.62■■□□□ 1.37
CLN6-202ENST00000538696 PAK3O75914 559 aaPredicted RBP23.61■■□□□ 1.37
CLN6-202ENST00000538696 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.61■■□□□ 1.37
CLN6-202ENST00000538696 PER1O15534 1290 aaPredicted RBP23.6■■□□□ 1.37
CLN6-202ENST00000538696 HSPA1LP34931 641 aa23.6■■□□□ 1.37
CLN6-202ENST00000538696 MED1Q15648 1581 aaPredicted RBP23.6■■□□□ 1.37
CLN6-202ENST00000538696 PHRF1Q9P1Y6 1649 aaKnown RBP23.59■■□□□ 1.37
CLN6-202ENST00000538696 NME9Q86XW9 330 aa23.59■■□□□ 1.37
CLN6-202ENST00000538696 ARHGEF10O15013 1369 aa23.57■■□□□ 1.36
CLN6-202ENST00000538696 LRRC59Q96AG4 307 aaKnown RBP23.57■■□□□ 1.36
CLN6-202ENST00000538696 KNSTRNQ9Y448 316 aa23.57■■□□□ 1.36
CLN6-202ENST00000538696 PNPLA6Q8IY17 1366 aa23.57■■□□□ 1.36
CLN6-202ENST00000538696 OVOS2A0A0J9YW53 1432 aa23.56■■□□□ 1.36
CLN6-202ENST00000538696 OVOS2Q6IE36 1432 aa23.56■■□□□ 1.36
CLN6-202ENST00000538696 ANP32CO43423 234 aa23.56■■□□□ 1.36
CLN6-202ENST00000538696 CGNL1Q0VF96 1302 aa23.56■■□□□ 1.36
CLN6-202ENST00000538696 USP31Q70CQ4 1352 aa23.56■■□□□ 1.36
CLN6-202ENST00000538696 ZRANB1Q9UGI0 708 aa23.56■■□□□ 1.36
CLN6-202ENST00000538696 AMER1Q5JTC6 1135 aaPredicted RBP23.55■■□□□ 1.36
CLN6-202ENST00000538696 ABTB2Q8N961 1025 aa23.55■■□□□ 1.36
CLN6-202ENST00000538696 SLIT3O75094 1523 aa23.54■■□□□ 1.36
CLN6-202ENST00000538696 FYB1O15117 783 aa23.54■■□□□ 1.36
CLN6-202ENST00000538696 NUTM2GQ5VZR2 741 aa23.54■■□□□ 1.36
CLN6-202ENST00000538696 LMOD2Q6P5Q4 547 aa23.54■■□□□ 1.36
CLN6-202ENST00000538696 NSD2O96028 1365 aa23.53■■□□□ 1.36
CLN6-202ENST00000538696 GGNBP2Q9H3C7 697 aa23.53■■□□□ 1.36
CLN6-202ENST00000538696 NPC1L1Q9UHC9 1359 aa23.52■■□□□ 1.36
CLN6-202ENST00000538696 JCADQ9P266 1359 aa23.51■■□□□ 1.35
CLN6-202ENST00000538696 USP19O94966 1318 aa23.51■■□□□ 1.35
CLN6-202ENST00000538696 NLRP6P59044 892 aa23.5■■□□□ 1.35
CLN6-202ENST00000538696 NFAT5O94916 1531 aa23.48■■□□□ 1.35
CLN6-202ENST00000538696 NLRP13Q86W25 1043 aa23.48■■□□□ 1.35
CLN6-202ENST00000538696 CC2D1BQ5T0F9 858 aaKnown RBP23.47■■□□□ 1.35
CLN6-202ENST00000538696 COG3Q96JB2 828 aa23.47■■□□□ 1.35
CLN6-202ENST00000538696 PLEKHG5O94827 1062 aa23.46■■□□□ 1.35
CLN6-202ENST00000538696 LTN1O94822 1766 aa23.46■■□□□ 1.35
CLN6-202ENST00000538696 CABLES1Q8TDN4 633 aa23.45■■□□□ 1.34
CLN6-202ENST00000538696 MAP2P11137 1827 aaKnown RBP23.44■■□□□ 1.34
CLN6-202ENST00000538696 CNGB1Q14028 1251 aaPredicted RBP23.43■■□□□ 1.34
CLN6-202ENST00000538696 LRP6O75581 1613 aa23.41■■□□□ 1.34
CLN6-202ENST00000538696 PRKRIP1Q9H875 184 aaPredicted RBP23.41■■□□□ 1.34
CLN6-202ENST00000538696 PARD3Q8TEW0 1356 aa23.4■■□□□ 1.34
CLN6-202ENST00000538696 MORC1Q86VD1 984 aa23.4■■□□□ 1.34
CLN6-202ENST00000538696 CCER2I3L3R5 266 aa23.39■■□□□ 1.34
CLN6-202ENST00000538696 SOX12O15370 315 aa23.39■■□□□ 1.34
CLN6-202ENST00000538696 GCP02774 474 aa23.39■■□□□ 1.34
CLN6-202ENST00000538696 SPATA31A6Q5VVP1 1343 aa23.39■■□□□ 1.33
CLN6-202ENST00000538696 PEAK1Q9H792 1746 aa23.39■■□□□ 1.33
CLN6-202ENST00000538696 KCNH5Q8NCM2 988 aa23.37■■□□□ 1.33
CLN6-202ENST00000538696 COL18A1P39060 1754 aa23.37■■□□□ 1.33
CLN6-202ENST00000538696 AATKQ6ZMQ8 1374 aa23.37■■□□□ 1.33
CLN6-202ENST00000538696 FBLN1P23142 703 aa23.36■■□□□ 1.33
CLN6-202ENST00000538696 NUTM2BA6NNL0 878 aaPredicted RBP23.35■■□□□ 1.33
CLN6-202ENST00000538696 NUTM2EB1AL46 878 aaPredicted RBP23.35■■□□□ 1.33
CLN6-202ENST00000538696 TNNT2P45379 298 aaPredicted RBP23.35■■□□□ 1.33
CLN6-202ENST00000538696 HAP1P54257 671 aaPredicted RBP23.35■■□□□ 1.33
CLN6-202ENST00000538696 ILDR1Q86SU0 546 aaPredicted RBP23.35■■□□□ 1.33
CLN6-202ENST00000538696 NUTM2AQ8IVF1 878 aaPredicted RBP23.35■■□□□ 1.33
CLN6-202ENST00000538696 PLCH1Q4KWH8 1693 aa23.35■■□□□ 1.33
CLN6-202ENST00000538696 RGPD5Q99666 1765 aa23.35■■□□□ 1.33
CLN6-202ENST00000538696 LMO7Q8WWI1 1683 aa23.34■■□□□ 1.33
CLN6-202ENST00000538696 CPDO75976 1380 aa23.34■■□□□ 1.33
CLN6-202ENST00000538696 COL14A1Q05707 1796 aaKnown RBP23.34■■□□□ 1.33
CLN6-202ENST00000538696 KIAA0232Q92628 1395 aa23.33■■□□□ 1.33
CLN6-202ENST00000538696 SMG6Q86US8 1419 aaKnown RBP23.33■■□□□ 1.33
CLN6-202ENST00000538696 ZC3H6P61129 1189 aaKnown RBP23.33■■□□□ 1.32
CLN6-202ENST00000538696 ABCC6O95255 1503 aa23.32■■□□□ 1.32
CLN6-202ENST00000538696 MAP3K19Q56UN5 1328 aa23.32■■□□□ 1.32
CLN6-202ENST00000538696 RRS1Q15050 365 aaKnown RBP23.31■■□□□ 1.32
CLN6-202ENST00000538696 RALBP1Q15311 655 aa23.31■■□□□ 1.32
CLN6-202ENST00000538696 ARHGEF25Q86VW2 580 aa23.31■■□□□ 1.32
CLN6-202ENST00000538696 ADAMTS2O95450 1211 aa23.3■■□□□ 1.32
CLN6-202ENST00000538696 POLKQ9UBT6 870 aa23.29■■□□□ 1.32
CLN6-202ENST00000538696 EMILIN1Q9Y6C2 1016 aa23.29■■□□□ 1.32
CLN6-202ENST00000538696 NRAPQ86VF7 1730 aa23.29■■□□□ 1.32
CLN6-202ENST00000538696 NWD2Q9ULI1 1742 aa23.29■■□□□ 1.32
CLN6-202ENST00000538696 RTL1A6NKG5 1358 aa23.28■■□□□ 1.32
CLN6-202ENST00000538696 ZBTB7CA1YPR0 619 aa23.28■■□□□ 1.32
CLN6-202ENST00000538696 PPP2R1AP30153 589 aa23.28■■□□□ 1.32
CLN6-202ENST00000538696 YTHDC1Q96MU7 727 aaKnown RBP23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms