RNA–Protein interactions for RNA: ENST00000538548.5

SFSWAP-207, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 2,636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-207ENST00000538548 GOLGA6L22H0YM25 854 aa23.2■■□□□ 1.3
SFSWAP-207ENST00000538548 USP32Q8NFA0 1604 aa23.19■■□□□ 1.3
SFSWAP-207ENST00000538548 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.19■■□□□ 1.3
SFSWAP-207ENST00000538548 CLEC17AQ6ZS10 378 aa23.19■■□□□ 1.3
SFSWAP-207ENST00000538548 KIF2CQ99661 725 aa23.18■■□□□ 1.3
SFSWAP-207ENST00000538548 ZBTB40Q9NUA8 1239 aa23.18■■□□□ 1.3
SFSWAP-207ENST00000538548 DEPDC5O75140 1603 aa23.17■■□□□ 1.3
SFSWAP-207ENST00000538548 KLHL40Q2TBA0 621 aa23.17■■□□□ 1.3
SFSWAP-207ENST00000538548 BMP2KLQ5H9B9 411 aa23.17■■□□□ 1.3
SFSWAP-207ENST00000538548 K7ELQ4 463 aaPredicted RBP23.17■■□□□ 1.3
SFSWAP-207ENST00000538548 MSNP26038 577 aaKnown RBP23.17■■□□□ 1.3
SFSWAP-207ENST00000538548 SSH1Q8WYL5 1049 aa23.17■■□□□ 1.3
SFSWAP-207ENST00000538548 TSR2Q969E8 191 aaKnown RBP23.17■■□□□ 1.3
SFSWAP-207ENST00000538548 ADGRF5Q8IZF2 1346 aa23.16■■□□□ 1.3
SFSWAP-207ENST00000538548 EXOSC9Q06265 439 aaKnown RBP23.16■■□□□ 1.3
SFSWAP-207ENST00000538548 ZFYVE16Q7Z3T8 1539 aa23.16■■□□□ 1.3
SFSWAP-207ENST00000538548 RIMBP3CA6NJZ7 1639 aa23.15■■□□□ 1.3
SFSWAP-207ENST00000538548 RIMBP3BA6NNM3 1639 aa23.15■■□□□ 1.3
SFSWAP-207ENST00000538548 RIMBP3Q9UFD9 1639 aa23.15■■□□□ 1.3
SFSWAP-207ENST00000538548 U2AF1L5P0DN76 240 aaPredicted RBP23.14■■□□□ 1.29
SFSWAP-207ENST00000538548 U2AF1Q01081 240 aaKnown RBP eCLIP23.14■■□□□ 1.295e-8■■■□□ 18.1
SFSWAP-207ENST00000538548 CHD1LQ86WJ1 897 aa23.14■■□□□ 1.29
SFSWAP-207ENST00000538548 LNPKQ9C0E8 428 aa23.14■■□□□ 1.29
SFSWAP-207ENST00000538548 CFAP74Q9C0B2 1584 aa23.14■■□□□ 1.29
SFSWAP-207ENST00000538548 CD2BP2O95400 341 aaKnown RBP23.13■■□□□ 1.29
SFSWAP-207ENST00000538548 FAM69CQ0P6D2 419 aa23.13■■□□□ 1.29
SFSWAP-207ENST00000538548 HS1BP3Q53T59 392 aa23.13■■□□□ 1.29
SFSWAP-207ENST00000538548 TMEM57Q8N5G2 664 aa23.13■■□□□ 1.29
SFSWAP-207ENST00000538548 SLC12A5Q9H2X9 1139 aa23.13■■□□□ 1.29
SFSWAP-207ENST00000538548 NOB1Q9ULX3 412 aaKnown RBP23.13■■□□□ 1.29
SFSWAP-207ENST00000538548 ARHGAP31Q2M1Z3 1444 aa23.13■■□□□ 1.29
SFSWAP-207ENST00000538548 KIF16BQ96L93 1317 aa23.13■■□□□ 1.29
SFSWAP-207ENST00000538548 SSFA2P28290 1259 aa23.12■■□□□ 1.29
SFSWAP-207ENST00000538548 CALD1Q05682 793 aaKnown RBP23.12■■□□□ 1.29
SFSWAP-207ENST00000538548 DDX49Q9Y6V7 483 aaKnown RBP23.12■■□□□ 1.29
SFSWAP-207ENST00000538548 NOS1P29475 1434 aa23.12■■□□□ 1.29
SFSWAP-207ENST00000538548 ABCC11Q96J66 1382 aa23.12■■□□□ 1.29
SFSWAP-207ENST00000538548 FOXD4L1Q9NU39 408 aa23.11■■□□□ 1.29
SFSWAP-207ENST00000538548 NRXN1Q9ULB1 1477 aa23.11■■□□□ 1.29
SFSWAP-207ENST00000538548 ATP7AQ04656 1500 aa23.11■■□□□ 1.29
SFSWAP-207ENST00000538548 IFT172Q9UG01 1749 aa23.11■■□□□ 1.29
SFSWAP-207ENST00000538548 GGT6Q6P531 493 aa23.11■■□□□ 1.29
SFSWAP-207ENST00000538548 RIPK4P57078 832 aa23.1■■□□□ 1.29
SFSWAP-207ENST00000538548 MAP7D2Q96T17 732 aa23.1■■□□□ 1.29
SFSWAP-207ENST00000538548 VWDEQ8N2E2 1590 aa23.1■■□□□ 1.29
SFSWAP-207ENST00000538548 IPO8O15397 1037 aaKnown RBP23.1■■□□□ 1.29
SFSWAP-207ENST00000538548 BAG4O95429 457 aaKnown RBP23.1■■□□□ 1.29
SFSWAP-207ENST00000538548 ZNF445P59923 1031 aa23.1■■□□□ 1.29
SFSWAP-207ENST00000538548 SETBP1Q9Y6X0 1596 aa23.08■■□□□ 1.29
SFSWAP-207ENST00000538548 ARAP3Q8WWN8 1544 aa23.08■■□□□ 1.29
SFSWAP-207ENST00000538548 KIF1BO60333 1816 aa23.08■■□□□ 1.28
SFSWAP-207ENST00000538548 ZC3H13Q5T200 1668 aaKnown RBP23.08■■□□□ 1.28
SFSWAP-207ENST00000538548 NSD2O96028 1365 aa23.08■■□□□ 1.28
SFSWAP-207ENST00000538548 GAS2L2Q8NHY3 880 aa23.08■■□□□ 1.28
SFSWAP-207ENST00000538548 IL16Q14005 1332 aa23.07■■□□□ 1.28
SFSWAP-207ENST00000538548 INO80Q9ULG1 1556 aaPredicted RBP23.07■■□□□ 1.28
SFSWAP-207ENST00000538548 NOL7Q9UMY1 257 aaKnown RBP23.06■■□□□ 1.28
SFSWAP-207ENST00000538548 UGGT1Q9NYU2 1555 aa23.05■■□□□ 1.28
SFSWAP-207ENST00000538548 ZNF500O60304 480 aaPredicted RBP23.05■■□□□ 1.28
SFSWAP-207ENST00000538548 TBC1D9Q6ZT07 1266 aa23.05■■□□□ 1.28
SFSWAP-207ENST00000538548 QRICH2Q9H0J4 1663 aa23.05■■□□□ 1.28
SFSWAP-207ENST00000538548 TMPOP42166 694 aaKnown RBP23.05■■□□□ 1.28
SFSWAP-207ENST00000538548 TRIM35Q9UPQ4 493 aa23.05■■□□□ 1.28
SFSWAP-207ENST00000538548 RBM42Q9BTD8 480 aaKnown RBP23.04■■□□□ 1.28
SFSWAP-207ENST00000538548 GCC1Q96CN9 775 aa23.04■■□□□ 1.28
SFSWAP-207ENST00000538548 PLEKHF1Q96S99 279 aa23.04■■□□□ 1.28
SFSWAP-207ENST00000538548 PDLIM2Q96JY6 352 aa23.03■■□□□ 1.28
SFSWAP-207ENST00000538548 RBM10P98175 930 aaKnown RBP23.02■■□□□ 1.28
SFSWAP-207ENST00000538548 R3HCC1Q9Y3T6 440 aaKnown RBP23.02■■□□□ 1.28
SFSWAP-207ENST00000538548 ALDH1L2Q3SY69 923 aa23.01■■□□□ 1.27
SFSWAP-207ENST00000538548 SENP3Q9H4L4 574 aaPredicted RBP23.01■■□□□ 1.27
SFSWAP-207ENST00000538548 MED14O60244 1454 aa23.01■■□□□ 1.27
SFSWAP-207ENST00000538548 REREQ9P2R6 1566 aa23.01■■□□□ 1.27
SFSWAP-207ENST00000538548 NUCB2P80303 420 aa23.01■■□□□ 1.27
SFSWAP-207ENST00000538548 ZSCAN23Q3MJ62 389 aa23.01■■□□□ 1.27
SFSWAP-207ENST00000538548 ANKRD45Q5TZF3 282 aa23.01■■□□□ 1.27
SFSWAP-207ENST00000538548 TRAK1Q9UPV9 953 aa23■■□□□ 1.27
SFSWAP-207ENST00000538548 KIDINS220Q9ULH0 1771 aa23■■□□□ 1.27
SFSWAP-207ENST00000538548 FAM13BQ9NYF5 915 aa22.99■■□□□ 1.27
SFSWAP-207ENST00000538548 MROH2AA6NES4 1674 aa22.99■■□□□ 1.27
SFSWAP-207ENST00000538548 CAVIN1Q6NZI2 390 aaKnown RBP22.99■■□□□ 1.27
SFSWAP-207ENST00000538548 ANKRD36BQ8N2N9 1353 aa22.99■■□□□ 1.27
SFSWAP-207ENST00000538548 PPIP5K1Q6PFW1 1433 aa22.99■■□□□ 1.27
SFSWAP-207ENST00000538548 POGZQ7Z3K3 1410 aa22.99■■□□□ 1.27
SFSWAP-207ENST00000538548 MCTP1Q6DN14 999 aa22.98■■□□□ 1.27
SFSWAP-207ENST00000538548 CHMP4BQ9H444 224 aaKnown RBP22.98■■□□□ 1.27
SFSWAP-207ENST00000538548 TSPOAP1O95153 1857 aa22.98■■□□□ 1.27
SFSWAP-207ENST00000538548 LMBRD1Q9NUN5 540 aa22.97■■□□□ 1.27
SFSWAP-207ENST00000538548 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.97■■□□□ 1.27
SFSWAP-207ENST00000538548 AK9Q5TCS8 1911 aa22.97■■□□□ 1.27
SFSWAP-207ENST00000538548 CFAP65Q6ZU64 1925 aaKnown RBP22.97■■□□□ 1.27
SFSWAP-207ENST00000538548 CDC45O75419 566 aa22.97■■□□□ 1.27
SFSWAP-207ENST00000538548 CYP2E1P05181 493 aaPredicted RBP22.97■■□□□ 1.27
SFSWAP-207ENST00000538548 RABEP1Q15276 862 aa22.97■■□□□ 1.27
SFSWAP-207ENST00000538548 MTERF4Q7Z6M4 381 aaKnown RBP22.97■■□□□ 1.27
SFSWAP-207ENST00000538548 PUS7Q96PZ0 661 aaKnown RBP22.97■■□□□ 1.27
SFSWAP-207ENST00000538548 PRDM4Q9UKN5 801 aa22.97■■□□□ 1.27
SFSWAP-207ENST00000538548 MCM5P33992 734 aa22.96■■□□□ 1.27
SFSWAP-207ENST00000538548 RBSNQ9H1K0 784 aa22.96■■□□□ 1.27
SFSWAP-207ENST00000538548 PPRC1Q5VV67 1664 aaKnown RBP22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms