RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 INSRP06213 1382 aa13.22□□□□□ -0.29
RTN3-208ENST00000537981 FAM135AQ9P2D6 1515 aa13.22□□□□□ -0.29
RTN3-208ENST00000537981 IBTKQ9P2D0 1353 aaPredicted RBP13.22□□□□□ -0.29
RTN3-208ENST00000537981 SYCE3A1L190 88 aa13.21□□□□□ -0.29
RTN3-208ENST00000537981 EPRSP07814 1512 aaKnown RBP13.21□□□□□ -0.29
RTN3-208ENST00000537981 ABCC5O15440 1437 aa13.21□□□□□ -0.29
RTN3-208ENST00000537981 KIAA1107Q9UPP5 1409 aa13.21□□□□□ -0.29
RTN3-208ENST00000537981 APBB1O00213 710 aa13.21□□□□□ -0.29
RTN3-208ENST00000537981 LMBRD1Q9NUN5 540 aa13.21□□□□□ -0.29
RTN3-208ENST00000537981 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.2□□□□□ -0.3
RTN3-208ENST00000537981 SECISBP2LQ93073 1101 aaKnown RBP13.2□□□□□ -0.3
RTN3-208ENST00000537981 PDCL2Q8N4E4 241 aa13.2□□□□□ -0.3
RTN3-208ENST00000537981 PMFBP1Q8TBY8 1022 aa13.2□□□□□ -0.3
RTN3-208ENST00000537981 TMEM63CQ9P1W3 806 aa13.2□□□□□ -0.3
RTN3-208ENST00000537981 RGL2O15211 777 aa13.19□□□□□ -0.3
RTN3-208ENST00000537981 SNX21Q969T3 373 aa13.19□□□□□ -0.3
RTN3-208ENST00000537981 TRERF1Q96PN7 1200 aa13.19□□□□□ -0.3
RTN3-208ENST00000537981 CIZ1Q9ULV3 898 aaPredicted RBP13.19□□□□□ -0.3
RTN3-208ENST00000537981 CAPN2P17655 700 aa13.19□□□□□ -0.3
RTN3-208ENST00000537981 KIAA2012Q0VF49 1180 aa13.19□□□□□ -0.3
RTN3-208ENST00000537981 CCDC39Q9UFE4 941 aa13.19□□□□□ -0.3
RTN3-208ENST00000537981 ADCY10Q96PN6 1610 aa13.19□□□□□ -0.3
RTN3-208ENST00000537981 TTC12Q9H892 705 aaPredicted RBP13.18□□□□□ -0.3
RTN3-208ENST00000537981 CDK13Q14004 1512 aaKnown RBP13.18□□□□□ -0.3
RTN3-208ENST00000537981 PRPF40AO75400 957 aaKnown RBP13.17□□□□□ -0.3
RTN3-208ENST00000537981 GTF2F1P35269 517 aaKnown RBP eCLIP13.17□□□□□ -0.33e-7■■■■■ 29.2
RTN3-208ENST00000537981 ECM2O94769 699 aaPredicted RBP13.17□□□□□ -0.3
RTN3-208ENST00000537981 PTMAP06454 111 aaKnown RBP13.17□□□□□ -0.3
RTN3-208ENST00000537981 PIAS4Q8N2W9 510 aaPredicted RBP13.17□□□□□ -0.3
RTN3-208ENST00000537981 TESK2Q96S53 571 aa13.17□□□□□ -0.3
RTN3-208ENST00000537981 KIF3AQ9Y496 699 aa13.17□□□□□ -0.3
RTN3-208ENST00000537981 SAMD9Q5K651 1589 aa13.16□□□□□ -0.3
RTN3-208ENST00000537981 K7ELQ4 463 aaPredicted RBP13.16□□□□□ -0.3
RTN3-208ENST00000537981 RRP7AQ9Y3A4 280 aaKnown RBP13.16□□□□□ -0.3
RTN3-208ENST00000537981 MAGI2Q86UL8 1455 aa13.16□□□□□ -0.3
RTN3-208ENST00000537981 COL17A1Q9UMD9 1497 aaPredicted RBP13.16□□□□□ -0.3
RTN3-208ENST00000537981 GOLGA6L22H0YM25 854 aa13.15□□□□□ -0.3
RTN3-208ENST00000537981 MCM5P33992 734 aa13.15□□□□□ -0.3
RTN3-208ENST00000537981 RARSP54136 660 aaKnown RBP13.15□□□□□ -0.3
RTN3-208ENST00000537981 NOLC1Q14978 699 aaKnown RBP eCLIP13.15□□□□□ -0.35e-6■□□□□ 9.2
RTN3-208ENST00000537981 SLFN14P0C7P3 912 aa13.15□□□□□ -0.3
RTN3-208ENST00000537981 NAA30Q147X3 362 aaPredicted RBP13.15□□□□□ -0.3
RTN3-208ENST00000537981 RWDD1Q9H446 243 aaPredicted RBP13.14□□□□□ -0.31
RTN3-208ENST00000537981 SCAPERQ9BY12 1400 aa13.14□□□□□ -0.31
RTN3-208ENST00000537981 RIOK3O14730 519 aaKnown RBP13.14□□□□□ -0.31
RTN3-208ENST00000537981 HMGN5P82970 282 aaKnown RBP13.14□□□□□ -0.31
RTN3-208ENST00000537981 FAM177A1Q8N128 213 aaPredicted RBP13.14□□□□□ -0.31
RTN3-208ENST00000537981 ERICH4A6NGS2 130 aa13.13□□□□□ -0.31
RTN3-208ENST00000537981 DNMT1P26358 1616 aaKnown RBP13.13□□□□□ -0.31
RTN3-208ENST00000537981 ROCK1Q13464 1354 aa13.13□□□□□ -0.31
RTN3-208ENST00000537981 ZMYM3Q14202 1370 aa13.13□□□□□ -0.31
RTN3-208ENST00000537981 TRIM6-TRIM34B2RNG4 842 aa13.13□□□□□ -0.31
RTN3-208ENST00000537981 MLECQ14165 292 aa13.13□□□□□ -0.31
RTN3-208ENST00000537981 LRSAM1Q6UWE0 723 aa13.13□□□□□ -0.31
RTN3-208ENST00000537981 PRIMPOLQ96LW4 560 aa13.13□□□□□ -0.31
RTN3-208ENST00000537981 TRIM34Q9BYJ4 488 aa13.13□□□□□ -0.31
RTN3-208ENST00000537981 FAM69CQ0P6D2 419 aa13.12□□□□□ -0.31
RTN3-208ENST00000537981 RGL3Q3MIN7 710 aa13.12□□□□□ -0.31
RTN3-208ENST00000537981 LMOD2Q6P5Q4 547 aa13.12□□□□□ -0.31
RTN3-208ENST00000537981 CLEC17AQ6ZS10 378 aa13.12□□□□□ -0.31
RTN3-208ENST00000537981 NGEFQ8N5V2 710 aa13.12□□□□□ -0.31
RTN3-208ENST00000537981 PIBF1Q8WXW3 757 aa13.12□□□□□ -0.31
RTN3-208ENST00000537981 ATXN8OSP0DMR3 200 aa13.11□□□□□ -0.31
RTN3-208ENST00000537981 IRX3P78415 501 aaPredicted RBP13.11□□□□□ -0.31
RTN3-208ENST00000537981 TAF3Q5VWG9 929 aa13.11□□□□□ -0.31
RTN3-208ENST00000537981 ANKRD7Q92527 254 aa13.11□□□□□ -0.31
RTN3-208ENST00000537981 ABCC2Q92887 1545 aa13.11□□□□□ -0.31
RTN3-208ENST00000537981 TRPM1Q7Z4N2 1603 aa13.11□□□□□ -0.31
RTN3-208ENST00000537981 PTMSP20962 102 aa13.11□□□□□ -0.31
RTN3-208ENST00000537981 ZGPATQ8N5A5 531 aaKnown RBP13.11□□□□□ -0.31
RTN3-208ENST00000537981 LNPKQ9C0E8 428 aa13.11□□□□□ -0.31
RTN3-208ENST00000537981 CWC22Q9HCG8 908 aaKnown RBP13.11□□□□□ -0.31
RTN3-208ENST00000537981 WWC1Q8IX03 1113 aa13.1□□□□□ -0.31
RTN3-208ENST00000537981 ST7Q9NRC1 585 aa13.1□□□□□ -0.31
RTN3-208ENST00000537981 ZDHHC9Q9Y397 364 aa13.1□□□□□ -0.31
RTN3-208ENST00000537981 ZNF592Q92610 1267 aa13.1□□□□□ -0.31
RTN3-208ENST00000537981 FKBP5Q13451 457 aaPredicted RBP13.09□□□□□ -0.31
RTN3-208ENST00000537981 ARHGAP31Q2M1Z3 1444 aa13.09□□□□□ -0.31
RTN3-208ENST00000537981 TEX2Q8IWB9 1127 aa13.09□□□□□ -0.31
RTN3-208ENST00000537981 ABCA8O94911 1581 aa13.08□□□□□ -0.31
RTN3-208ENST00000537981 ASXL2Q76L83 1435 aa13.08□□□□□ -0.31
RTN3-208ENST00000537981 CYP2E1P05181 493 aaPredicted RBP13.08□□□□□ -0.32
RTN3-208ENST00000537981 USP25Q9UHP3 1055 aa13.08□□□□□ -0.32
RTN3-208ENST00000537981 ERBINQ96RT1 1412 aa13.08□□□□□ -0.32
RTN3-208ENST00000537981 CHRM1P11229 460 aaPredicted RBP13.08□□□□□ -0.32
RTN3-208ENST00000537981 NCBP1Q09161 790 aaKnown RBP13.08□□□□□ -0.32
RTN3-208ENST00000537981 ARHGEF12Q9NZN5 1544 aa13.07□□□□□ -0.32
RTN3-208ENST00000537981 MVPQ14764 893 aaKnown RBP13.07□□□□□ -0.32
RTN3-208ENST00000537981 PLXNC1O60486 1568 aa13.07□□□□□ -0.32
RTN3-208ENST00000537981 NUP153P49790 1475 aaKnown RBP13.07□□□□□ -0.32
RTN3-208ENST00000537981 PYCARDQ9ULZ3 195 aa13.07□□□□□ -0.32
RTN3-208ENST00000537981 KNSTRNQ9Y448 316 aa13.07□□□□□ -0.32
RTN3-208ENST00000537981 KDM5DQ9BY66 1539 aa13.07□□□□□ -0.32
RTN3-208ENST00000537981 KIF16BQ96L93 1317 aa13.07□□□□□ -0.32
RTN3-208ENST00000537981 UHRF1BP1LA0JNW5 1464 aa13.06□□□□□ -0.32
RTN3-208ENST00000537981 ATP10BO94823 1461 aa13.06□□□□□ -0.32
RTN3-208ENST00000537981 NINLQ9Y2I6 1382 aa13.06□□□□□ -0.32
RTN3-208ENST00000537981 FOXD4L6Q3SYB3 417 aaPredicted RBP13.06□□□□□ -0.32
RTN3-208ENST00000537981 FOXD4L3Q6VB84 417 aaPredicted RBP13.06□□□□□ -0.32
RTN3-208ENST00000537981 SLC52A1Q9NWF4 448 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms