RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 NUTM2GQ5VZR2 741 aa16.57■□□□□ 0.24
CLIP1-208ENST00000537004 CABP1Q9NZU7 370 aa16.57■□□□□ 0.24
CLIP1-208ENST00000537004 FNBP4Q8N3X1 1017 aaPredicted RBP16.56■□□□□ 0.24
CLIP1-208ENST00000537004 EVC2Q86UK5 1308 aa16.56■□□□□ 0.24
CLIP1-208ENST00000537004 PPIP5K1Q6PFW1 1433 aa16.56■□□□□ 0.24
CLIP1-208ENST00000537004 RXRBP28702 533 aa16.55■□□□□ 0.24
CLIP1-208ENST00000537004 ARHGEF10O15013 1369 aa16.55■□□□□ 0.24
CLIP1-208ENST00000537004 POLR3AO14802 1390 aaPredicted RBP16.55■□□□□ 0.24
CLIP1-208ENST00000537004 EP400Q96L91 3159 aa16.53■□□□□ 0.24
CLIP1-208ENST00000537004 TRPM3Q9HCF6 1732 aaPredicted RBP16.53■□□□□ 0.24
CLIP1-208ENST00000537004 BCL9LQ86UU0 1499 aa16.52■□□□□ 0.24
CLIP1-208ENST00000537004 WASHC2AQ641Q2 1341 aa16.52■□□□□ 0.24
CLIP1-208ENST00000537004 TOPAZ1Q8N9V7 1692 aa16.51■□□□□ 0.23
CLIP1-208ENST00000537004 ST20-MTHFSA0A0A6YYL1 179 aa16.51■□□□□ 0.23
CLIP1-208ENST00000537004 FAM83GA6ND36 823 aa16.51■□□□□ 0.23
CLIP1-208ENST00000537004 RBM6P78332 1123 aaKnown RBP16.5■□□□□ 0.23
CLIP1-208ENST00000537004 ITSN1Q15811 1721 aa16.5■□□□□ 0.23
CLIP1-208ENST00000537004 TRPC5Q9UL62 973 aaPredicted RBP16.5■□□□□ 0.23
CLIP1-208ENST00000537004 ABTB2Q8N961 1025 aa16.49■□□□□ 0.23
CLIP1-208ENST00000537004 ALS2Q96Q42 1657 aa16.49■□□□□ 0.23
CLIP1-208ENST00000537004 USP47Q96K76 1375 aa16.48■□□□□ 0.23
CLIP1-208ENST00000537004 TESK2Q96S53 571 aa16.48■□□□□ 0.23
CLIP1-208ENST00000537004 SBNO2Q9Y2G9 1366 aa16.48■□□□□ 0.23
CLIP1-208ENST00000537004 UNC5CLQ8IV45 518 aa16.47■□□□□ 0.23
CLIP1-208ENST00000537004 CCDC7Q96M83 1385 aa16.47■□□□□ 0.23
CLIP1-208ENST00000537004 ATRNO75882 1429 aa16.47■□□□□ 0.23
CLIP1-208ENST00000537004 SLIT2O94813 1529 aa16.47■□□□□ 0.23
CLIP1-208ENST00000537004 C11orf95C9JLR9 678 aaPredicted RBP16.46■□□□□ 0.23
CLIP1-208ENST00000537004 ANP32CO43423 234 aa16.46■□□□□ 0.23
CLIP1-208ENST00000537004 ZC3H6P61129 1189 aaKnown RBP16.46■□□□□ 0.23
CLIP1-208ENST00000537004 RGS12O14924 1447 aa16.46■□□□□ 0.22
CLIP1-208ENST00000537004 MYT1Q01538 1121 aa16.45■□□□□ 0.22
CLIP1-208ENST00000537004 CHRNA2Q15822 529 aa16.45■□□□□ 0.22
CLIP1-208ENST00000537004 USP6P35125 1406 aa16.45■□□□□ 0.22
CLIP1-208ENST00000537004 TMC1Q8TDI8 760 aa16.45■□□□□ 0.22
CLIP1-208ENST00000537004 GJD4Q96KN9 370 aaPredicted RBP16.45■□□□□ 0.22
CLIP1-208ENST00000537004 SLC12A5Q9H2X9 1139 aa16.45■□□□□ 0.22
CLIP1-208ENST00000537004 BTG4Q9NY30 223 aa16.45■□□□□ 0.22
CLIP1-208ENST00000537004 ABCA3Q99758 1704 aa16.44■□□□□ 0.22
CLIP1-208ENST00000537004 ATAD2Q6PL18 1390 aa16.44■□□□□ 0.22
CLIP1-208ENST00000537004 MARF1Q9Y4F3 1742 aaKnown RBP16.44■□□□□ 0.22
CLIP1-208ENST00000537004 KIAA0232Q92628 1395 aa16.44■□□□□ 0.22
CLIP1-208ENST00000537004 PRDM11Q9NQV5 511 aa16.43■□□□□ 0.22
CLIP1-208ENST00000537004 NLRP6P59044 892 aa16.42■□□□□ 0.22
CLIP1-208ENST00000537004 SSH2Q76I76 1423 aa16.42■□□□□ 0.22
CLIP1-208ENST00000537004 CCDC9Q9Y3X0 531 aaKnown RBP16.41■□□□□ 0.22
CLIP1-208ENST00000537004 KIF7Q2M1P5 1343 aa16.41■□□□□ 0.22
CLIP1-208ENST00000537004 CDK12Q9NYV4 1490 aaPredicted RBP16.41■□□□□ 0.22
CLIP1-208ENST00000537004 NLRP13Q86W25 1043 aa16.41■□□□□ 0.22
CLIP1-208ENST00000537004 TTC21BQ7Z4L5 1316 aa16.41■□□□□ 0.22
CLIP1-208ENST00000537004 CCER2I3L3R5 266 aa16.4■□□□□ 0.22
CLIP1-208ENST00000537004 GCP02774 474 aa16.4■□□□□ 0.22
CLIP1-208ENST00000537004 ZNF692Q9BU19 519 aaPredicted RBP16.4■□□□□ 0.22
CLIP1-208ENST00000537004 USP19O94966 1318 aa16.4■□□□□ 0.22
CLIP1-208ENST00000537004 CPSF1Q10570 1443 aaKnown RBP16.4■□□□□ 0.22
CLIP1-208ENST00000537004 VPS72Q15906 364 aa16.4■□□□□ 0.22
CLIP1-208ENST00000537004 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.4■□□□□ 0.22
CLIP1-208ENST00000537004 KTN1Q86UP2 1357 aaKnown RBP16.39■□□□□ 0.21
CLIP1-208ENST00000537004 SRCAPQ6ZRS2 3230 aa16.39■□□□□ 0.21
CLIP1-208ENST00000537004 CRYBG1Q9Y4K1 1723 aa16.39■□□□□ 0.21
CLIP1-208ENST00000537004 ZRANB1Q9UGI0 708 aa16.39■□□□□ 0.21
CLIP1-208ENST00000537004 SOX12O15370 315 aa16.38■□□□□ 0.21
CLIP1-208ENST00000537004 CD163L1Q9NR16 1453 aa16.38■□□□□ 0.21
CLIP1-208ENST00000537004 ZBTB7CA1YPR0 619 aa16.38■□□□□ 0.21
CLIP1-208ENST00000537004 PLCH1Q4KWH8 1693 aa16.37■□□□□ 0.21
CLIP1-208ENST00000537004 UPF1Q92900 1129 aaKnown RBP eCLIP16.37■□□□□ 0.21
CLIP1-208ENST00000537004 STRN4Q9NRL3 753 aa16.37■□□□□ 0.21
CLIP1-208ENST00000537004 GLI3P10071 1580 aa16.37■□□□□ 0.21
CLIP1-208ENST00000537004 BRD4O60885 1362 aaPredicted RBP16.37■□□□□ 0.21
CLIP1-208ENST00000537004 PHRF1Q9P1Y6 1649 aaKnown RBP16.36■□□□□ 0.21
CLIP1-208ENST00000537004 NME9Q86XW9 330 aa16.35■□□□□ 0.21
CLIP1-208ENST00000537004 A0A1W2PP64 1363 aa16.35■□□□□ 0.21
CLIP1-208ENST00000537004 NRKQ7Z2Y5 1582 aa16.35■□□□□ 0.21
CLIP1-208ENST00000537004 TMF1P82094 1093 aa16.35■□□□□ 0.21
CLIP1-208ENST00000537004 FAM98CQ17RN3 349 aaKnown RBP16.35■□□□□ 0.21
CLIP1-208ENST00000537004 HDGFL2Q7Z4V5 671 aaPredicted RBP16.35■□□□□ 0.21
CLIP1-208ENST00000537004 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.34■□□□□ 0.21
CLIP1-208ENST00000537004 SEPT12Q8IYM1 358 aa16.34■□□□□ 0.21
CLIP1-208ENST00000537004 PUS7Q96PZ0 661 aaKnown RBP16.34■□□□□ 0.21
CLIP1-208ENST00000537004 PIK3C2AO00443 1686 aa16.34■□□□□ 0.21
CLIP1-208ENST00000537004 USP35Q9P2H5 1018 aa16.33■□□□□ 0.21
CLIP1-208ENST00000537004 COL14A1Q05707 1796 aaKnown RBP16.33■□□□□ 0.2
CLIP1-208ENST00000537004 CPDO75976 1380 aa16.33■□□□□ 0.2
CLIP1-208ENST00000537004 TTC21AQ8NDW8 1320 aa16.33■□□□□ 0.2
CLIP1-208ENST00000537004 A0A0G2JS52 829 aa16.33■□□□□ 0.2
CLIP1-208ENST00000537004 TERF2IPQ9NYB0 399 aa16.33■□□□□ 0.2
CLIP1-208ENST00000537004 NWD2Q9ULI1 1742 aa16.33■□□□□ 0.2
CLIP1-208ENST00000537004 SPATA31A5Q5VU36 1347 aa16.32■□□□□ 0.2
CLIP1-208ENST00000537004 SPATA31A7Q8IWB4 1347 aa16.32■□□□□ 0.2
CLIP1-208ENST00000537004 LARP1Q6PKG0 1096 aaKnown RBP16.31■□□□□ 0.2
CLIP1-208ENST00000537004 GTF3C3Q9Y5Q9 886 aa16.31■□□□□ 0.2
CLIP1-208ENST00000537004 AKAP12Q02952 1782 aa16.31■□□□□ 0.2
CLIP1-208ENST00000537004 CAMTA1Q9Y6Y1 1673 aa16.31■□□□□ 0.2
CLIP1-208ENST00000537004 ONECUT3O60422 494 aaPredicted RBP16.31■□□□□ 0.2
CLIP1-208ENST00000537004 SLC24A1O60721 1099 aa16.31■□□□□ 0.2
CLIP1-208ENST00000537004 EVA1CP58658 441 aa16.31■□□□□ 0.2
CLIP1-208ENST00000537004 AXIN2Q9Y2T1 843 aa16.31■□□□□ 0.2
CLIP1-208ENST00000537004 NRAPQ86VF7 1730 aa16.31■□□□□ 0.2
CLIP1-208ENST00000537004 SLIT3O75094 1523 aa16.29■□□□□ 0.2
CLIP1-208ENST00000537004 EDC4Q6P2E9 1401 aaKnown RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms