RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 PLEKHG3A1L390 1219 aa12.07□□□□□ -0.48
SYNE1-232ENST00000535081 NXF1Q9UBU9 619 aaKnown RBP12.06□□□□□ -0.48
SYNE1-232ENST00000535081 CTHP32929 405 aa12.05□□□□□ -0.48
SYNE1-232ENST00000535081 NNTQ13423 1086 aa12.05□□□□□ -0.48
SYNE1-232ENST00000535081 LYPD8Q6UX82 237 aa12.05□□□□□ -0.48
SYNE1-232ENST00000535081 MPNDQ8N594 471 aa12.05□□□□□ -0.48
SYNE1-232ENST00000535081 SLC16A10Q8TF71 515 aa12.05□□□□□ -0.48
SYNE1-232ENST00000535081 PCDHB15Q9Y5E8 787 aa12.04□□□□□ -0.48
SYNE1-232ENST00000535081 CFAP99D6REC4 459 aa12.03□□□□□ -0.48
SYNE1-232ENST00000535081 SPTLC1O15269 473 aa12.03□□□□□ -0.48
SYNE1-232ENST00000535081 ZBTB3Q9H5J0 574 aa12.03□□□□□ -0.48
SYNE1-232ENST00000535081 TRIM66O15016 1216 aa12.02□□□□□ -0.49
SYNE1-232ENST00000535081 HRCP23327 699 aa12.01□□□□□ -0.49
SYNE1-232ENST00000535081 ZFP42Q96MM3 310 aa12.01□□□□□ -0.49
SYNE1-232ENST00000535081 MAP10Q9P2G4 905 aa12.01□□□□□ -0.49
SYNE1-232ENST00000535081 F12P00748 615 aaPredicted RBP12□□□□□ -0.49
SYNE1-232ENST00000535081 NPAS3Q8IXF0 933 aa12□□□□□ -0.49
SYNE1-232ENST00000535081 FAM174AQ8TBP5 190 aa12□□□□□ -0.49
SYNE1-232ENST00000535081 ADH1CP00326 375 aa11.99□□□□□ -0.49
SYNE1-232ENST00000535081 PRPF38BQ5VTL8 546 aaKnown RBP11.99□□□□□ -0.49
SYNE1-232ENST00000535081 TIMP2P16035 220 aa11.98□□□□□ -0.49
SYNE1-232ENST00000535081 WDR4P57081 412 aaKnown RBP11.98□□□□□ -0.49
SYNE1-232ENST00000535081 RIC3Q7Z5B4 369 aa11.98□□□□□ -0.49
SYNE1-232ENST00000535081 FOXJ1Q92949 421 aa11.98□□□□□ -0.49
SYNE1-232ENST00000535081 MRPL14Q6P1L8 145 aaKnown RBP11.97□□□□□ -0.49
SYNE1-232ENST00000535081 CABLES1Q8TDN4 633 aa11.97□□□□□ -0.49
SYNE1-232ENST00000535081 IRF7Q92985 503 aa11.97□□□□□ -0.49
SYNE1-232ENST00000535081 AK7Q96M32 723 aa11.97□□□□□ -0.49
SYNE1-232ENST00000535081 GMPRP36959 345 aa11.96□□□□□ -0.49
SYNE1-232ENST00000535081 VEGFBP49765 207 aa11.96□□□□□ -0.49
SYNE1-232ENST00000535081 H3BM21 787 aa11.95□□□□□ -0.5
SYNE1-232ENST00000535081 SCARF1Q14162 830 aa11.95□□□□□ -0.5
SYNE1-232ENST00000535081 CSPP1Q1MSJ5 1256 aa11.95□□□□□ -0.5
SYNE1-232ENST00000535081 CDK15Q96Q40 435 aa11.95□□□□□ -0.5
SYNE1-232ENST00000535081 PURBQ96QR8 312 aaKnown RBP11.94□□□□□ -0.5
SYNE1-232ENST00000535081 KLF16Q9BXK1 252 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-232ENST00000535081 PER1O15534 1290 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-232ENST00000535081 ARID5BQ14865 1188 aa11.93□□□□□ -0.5
SYNE1-232ENST00000535081 AGERQ15109 404 aa11.92□□□□□ -0.5
SYNE1-232ENST00000535081 C4orf48Q5BLP8 95 aa11.91□□□□□ -0.5
SYNE1-232ENST00000535081 TSC1Q92574 1164 aa11.91□□□□□ -0.5
SYNE1-232ENST00000535081 LIMD1Q9UGP4 676 aa11.91□□□□□ -0.5
SYNE1-232ENST00000535081 ERBB4Q15303 1308 aa11.9□□□□□ -0.5
SYNE1-232ENST00000535081 QPCTQ16769 361 aa11.9□□□□□ -0.5
SYNE1-232ENST00000535081 MYSM1Q5VVJ2 828 aa11.9□□□□□ -0.5
SYNE1-232ENST00000535081 BPHLQ86WA6 291 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-232ENST00000535081 FAM181BA6NEQ2 426 aa11.89□□□□□ -0.51
SYNE1-232ENST00000535081 ZIC2O95409 532 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-232ENST00000535081 NR5A1Q13285 461 aa11.89□□□□□ -0.51
SYNE1-232ENST00000535081 ZFAND3Q9H8U3 227 aa11.89□□□□□ -0.51
SYNE1-232ENST00000535081 NUTM2BA6NNL0 878 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-232ENST00000535081 NUTM2EB1AL46 878 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-232ENST00000535081 NR3C2P08235 984 aa11.88□□□□□ -0.51
SYNE1-232ENST00000535081 PDE4DQ08499 809 aa11.88□□□□□ -0.51
SYNE1-232ENST00000535081 TUSC1Q2TAM9 212 aa11.88□□□□□ -0.51
SYNE1-232ENST00000535081 NUTM2DQ5VT03 806 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-232ENST00000535081 NUTM2AQ8IVF1 878 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-232ENST00000535081 ITPKCQ96DU7 683 aa11.88□□□□□ -0.51
SYNE1-232ENST00000535081 SOBPA7XYQ1 873 aa11.87□□□□□ -0.51
SYNE1-232ENST00000535081 ZSCAN1Q8NBB4 408 aa11.87□□□□□ -0.51
SYNE1-232ENST00000535081 LORP23490 312 aaPredicted RBP11.86□□□□□ -0.51
SYNE1-232ENST00000535081 LILRB3O75022 631 aa11.85□□□□□ -0.51
SYNE1-232ENST00000535081 GRM5P41594 1212 aa11.85□□□□□ -0.51
SYNE1-232ENST00000535081 ARMC2Q8NEN0 867 aa11.85□□□□□ -0.51
SYNE1-232ENST00000535081 NBPF14Q5TI25 921 aa11.84□□□□□ -0.51
SYNE1-232ENST00000535081 HELBQ8NG08 1087 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-232ENST00000535081 C1QTNF2Q9BXJ5 285 aa11.84□□□□□ -0.51
SYNE1-232ENST00000535081 C6orf118Q5T5N4 469 aa11.83□□□□□ -0.52
SYNE1-232ENST00000535081 SH3RF1Q7Z6J0 888 aa11.82□□□□□ -0.52
SYNE1-232ENST00000535081 MAN1A2O60476 641 aa11.81□□□□□ -0.52
SYNE1-232ENST00000535081 FSHRP23945 695 aa11.81□□□□□ -0.52
SYNE1-232ENST00000535081 CLK2P49760 499 aaKnown RBP11.81□□□□□ -0.52
SYNE1-232ENST00000535081 MEIOBQ8N635 442 aa11.81□□□□□ -0.52
SYNE1-232ENST00000535081 VSIG8P0DPA2 414 aa11.8□□□□□ -0.52
SYNE1-232ENST00000535081 RTL5Q5HYW3 569 aaPredicted RBP11.8□□□□□ -0.52
SYNE1-232ENST00000535081 SH3BP5LQ7L8J4 393 aa11.8□□□□□ -0.52
SYNE1-232ENST00000535081 LINC00528Q8N1L1 170 aa11.8□□□□□ -0.52
SYNE1-232ENST00000535081 MAP4K5Q9Y4K4 846 aa11.8□□□□□ -0.52
SYNE1-232ENST00000535081 UPP2O95045 317 aa11.79□□□□□ -0.52
SYNE1-232ENST00000535081 SLC24A3Q9HC58 644 aa11.79□□□□□ -0.52
SYNE1-232ENST00000535081 MAGEB6P1A0A0J9YX57 407 aa11.78□□□□□ -0.52
SYNE1-232ENST00000535081 BMP2P12643 396 aa11.78□□□□□ -0.52
SYNE1-232ENST00000535081 VASH1Q7L8A9 365 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-232ENST00000535081 TRMT44Q8IYL2 757 aaKnown RBP11.78□□□□□ -0.52
SYNE1-232ENST00000535081 GPKOWQ92917 476 aaPredicted RBP eCLIP11.75□□□□□ -0.53
SYNE1-232ENST00000535081 CARD14Q9BXL6 1004 aa11.75□□□□□ -0.53
SYNE1-232ENST00000535081 RSPH6AQ9H0K4 717 aa11.75□□□□□ -0.53
SYNE1-232ENST00000535081 CCDC116Q8IYX3 515 aa11.74□□□□□ -0.53
SYNE1-232ENST00000535081 EMILIN1Q9Y6C2 1016 aa11.74□□□□□ -0.53
SYNE1-232ENST00000535081 SOS2Q07890 1332 aaPredicted RBP11.73□□□□□ -0.53
SYNE1-232ENST00000535081 POLR3EQ9NVU0 708 aa11.73□□□□□ -0.53
SYNE1-232ENST00000535081 PPFIA3O75145 1194 aa11.72□□□□□ -0.53
SYNE1-232ENST00000535081 ERFEQ4G0M1 354 aa11.72□□□□□ -0.53
SYNE1-232ENST00000535081 TSEN34Q9BSV6 310 aaKnown RBP11.72□□□□□ -0.53
SYNE1-232ENST00000535081 DNMT3LQ9UJW3 386 aa11.72□□□□□ -0.53
SYNE1-232ENST00000535081 CTDSPL2Q05D32 466 aa11.69□□□□□ -0.54
SYNE1-232ENST00000535081 PPP1R26Q5T8A7 1209 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-232ENST00000535081 PDXDC2PQ6P474 469 aa11.66□□□□□ -0.54
SYNE1-232ENST00000535081 ARHGAP9Q9BRR9 750 aa11.66□□□□□ -0.54
SYNE1-232ENST00000535081 PGPEP1Q9NXJ5 209 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms