RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 SSH2Q76I76 1423 aa27.27■■□□□ 1.96
TNFRSF1A-205ENST00000534885 SCAF1Q9H7N4 1312 aaKnown RBP27.27■■□□□ 1.96
TNFRSF1A-205ENST00000534885 ZNF335Q9H4Z2 1342 aaPredicted RBP27.26■■□□□ 1.95
TNFRSF1A-205ENST00000534885 XIRP1Q702N8 1843 aaKnown RBP27.25■■□□□ 1.95
TNFRSF1A-205ENST00000534885 PHF8Q9UPP1 1060 aa27.25■■□□□ 1.95
TNFRSF1A-205ENST00000534885 NCOA3Q9Y6Q9 1424 aa27.24■■□□□ 1.95
TNFRSF1A-205ENST00000534885 ESCO1Q5FWF5 840 aa27.23■■□□□ 1.95
TNFRSF1A-205ENST00000534885 SENP3-EIF4A1A0A087X0R7 540 aa27.22■■□□□ 1.95
TNFRSF1A-205ENST00000534885 WDR43Q15061 677 aaKnown RBP eCLIP27.22■■□□□ 1.95
TNFRSF1A-205ENST00000534885 ADAMTS8Q9UP79 889 aa27.22■■□□□ 1.95
TNFRSF1A-205ENST00000534885 FBLN1P23142 703 aa27.21■■□□□ 1.95
TNFRSF1A-205ENST00000534885 COG3Q96JB2 828 aa27.21■■□□□ 1.95
TNFRSF1A-205ENST00000534885 SHPRHQ149N8 1683 aa27.21■■□□□ 1.95
TNFRSF1A-205ENST00000534885 ORAI2Q96SN7 254 aa27.2■■□□□ 1.95
TNFRSF1A-205ENST00000534885 DCCP43146 1447 aa27.19■■□□□ 1.94
TNFRSF1A-205ENST00000534885 LRRC7Q96NW7 1537 aa27.19■■□□□ 1.94
TNFRSF1A-205ENST00000534885 MAP2P11137 1827 aaKnown RBP27.19■■□□□ 1.94
TNFRSF1A-205ENST00000534885 TTC21AQ8NDW8 1320 aa27.19■■□□□ 1.94
TNFRSF1A-205ENST00000534885 OVOS2A0A0J9YW53 1432 aa27.19■■□□□ 1.94
TNFRSF1A-205ENST00000534885 BLMP54132 1417 aaPredicted RBP27.19■■□□□ 1.94
TNFRSF1A-205ENST00000534885 OVOS2Q6IE36 1432 aa27.19■■□□□ 1.94
TNFRSF1A-205ENST00000534885 ZBED9Q6R2W3 1325 aa27.18■■□□□ 1.94
TNFRSF1A-205ENST00000534885 C1orf167Q5SNV9 1468 aa27.18■■□□□ 1.94
TNFRSF1A-205ENST00000534885 INSRP06213 1382 aa27.17■■□□□ 1.94
TNFRSF1A-205ENST00000534885 ATF3P18847 181 aa27.17■■□□□ 1.94
TNFRSF1A-205ENST00000534885 PIK3C2AO00443 1686 aa27.17■■□□□ 1.94
TNFRSF1A-205ENST00000534885 DMRT2Q9Y5R5 561 aa27.17■■□□□ 1.94
TNFRSF1A-205ENST00000534885 CFAP53Q96M91 514 aa27.16■■□□□ 1.94
TNFRSF1A-205ENST00000534885 MST1RQ04912 1400 aa27.15■■□□□ 1.94
TNFRSF1A-205ENST00000534885 MSH6P52701 1360 aa27.14■■□□□ 1.94
TNFRSF1A-205ENST00000534885 POLKQ9UBT6 870 aa27.14■■□□□ 1.94
TNFRSF1A-205ENST00000534885 COL3A1P02461 1466 aaPredicted RBP27.13■■□□□ 1.93
TNFRSF1A-205ENST00000534885 AATKQ6ZMQ8 1374 aa27.13■■□□□ 1.93
TNFRSF1A-205ENST00000534885 FOXO3O43524 673 aa27.11■■□□□ 1.93
TNFRSF1A-205ENST00000534885 CADPS2Q86UW7 1296 aa27.11■■□□□ 1.93
TNFRSF1A-205ENST00000534885 KIF1AQ12756 1690 aa27.1■■□□□ 1.93
TNFRSF1A-205ENST00000534885 PAK3O75914 559 aaPredicted RBP27.1■■□□□ 1.93
TNFRSF1A-205ENST00000534885 EMILIN1Q9Y6C2 1016 aa27.1■■□□□ 1.93
TNFRSF1A-205ENST00000534885 PNPLA6Q8IY17 1366 aa27.1■■□□□ 1.93
TNFRSF1A-205ENST00000534885 PSME1Q06323 249 aa27.1■■□□□ 1.93
TNFRSF1A-205ENST00000534885 USP31Q70CQ4 1352 aa27.09■■□□□ 1.93
TNFRSF1A-205ENST00000534885 PPM1GO15355 546 aaPredicted RBP27.09■■□□□ 1.93
TNFRSF1A-205ENST00000534885 RRS1Q15050 365 aaKnown RBP27.09■■□□□ 1.93
TNFRSF1A-205ENST00000534885 SMG6Q86US8 1419 aaKnown RBP27.09■■□□□ 1.93
TNFRSF1A-205ENST00000534885 MARF1Q9Y4F3 1742 aaKnown RBP27.09■■□□□ 1.93
TNFRSF1A-205ENST00000534885 NLRP6P59044 892 aa27.06■■□□□ 1.92
TNFRSF1A-205ENST00000534885 XPCQ01831 940 aaPredicted RBP27.06■■□□□ 1.92
TNFRSF1A-205ENST00000534885 NUTM2GQ5VZR2 741 aa27.06■■□□□ 1.92
TNFRSF1A-205ENST00000534885 CCDC146Q8IYE0 955 aa27.06■■□□□ 1.92
TNFRSF1A-205ENST00000534885 ABTB2Q8N961 1025 aa27.06■■□□□ 1.92
TNFRSF1A-205ENST00000534885 SALL2Q9Y467 1007 aaPredicted RBP27.06■■□□□ 1.92
TNFRSF1A-205ENST00000534885 USP54Q70EL1 1684 aa27.05■■□□□ 1.92
TNFRSF1A-205ENST00000534885 SOX12O15370 315 aa27.04■■□□□ 1.92
TNFRSF1A-205ENST00000534885 CDK12Q9NYV4 1490 aaPredicted RBP27.04■■□□□ 1.92
TNFRSF1A-205ENST00000534885 TRPM3Q9HCF6 1732 aaPredicted RBP27.02■■□□□ 1.92
TNFRSF1A-205ENST00000534885 DIAPH1O60610 1272 aaKnown RBP27.01■■□□□ 1.91
TNFRSF1A-205ENST00000534885 U2AF1L5P0DN76 240 aaPredicted RBP27■■□□□ 1.91
TNFRSF1A-205ENST00000534885 U2AF1Q01081 240 aaKnown RBP eCLIP27■■□□□ 1.91
TNFRSF1A-205ENST00000534885 U2SURPO15042 1029 aaKnown RBP26.99■■□□□ 1.91
TNFRSF1A-205ENST00000534885 KRT28Q7Z3Y7 464 aa26.99■■□□□ 1.91
TNFRSF1A-205ENST00000534885 NUDCQ9Y266 331 aa26.99■■□□□ 1.91
TNFRSF1A-205ENST00000534885 PEAK1Q9H792 1746 aa26.99■■□□□ 1.91
TNFRSF1A-205ENST00000534885 DDX17Q92841 729 aaKnown RBP26.99■■□□□ 1.91
TNFRSF1A-205ENST00000534885 APAF1O14727 1248 aa26.96■■□□□ 1.91
TNFRSF1A-205ENST00000534885 MAP3K19Q56UN5 1328 aa26.96■■□□□ 1.91
TNFRSF1A-205ENST00000534885 BRINP3Q76B58 766 aa26.94■■□□□ 1.9
TNFRSF1A-205ENST00000534885 SLAIN2Q9P270 581 aa26.94■■□□□ 1.9
TNFRSF1A-205ENST00000534885 IL13P35225 146 aa26.93■■□□□ 1.9
TNFRSF1A-205ENST00000534885 RUNDC1Q96C34 613 aa26.93■■□□□ 1.9
TNFRSF1A-205ENST00000534885 NPHP3Q7Z494 1330 aa26.92■■□□□ 1.9
TNFRSF1A-205ENST00000534885 ALS2Q96Q42 1657 aa26.92■■□□□ 1.9
TNFRSF1A-205ENST00000534885 LMOD2Q6P5Q4 547 aa26.91■■□□□ 1.9
TNFRSF1A-205ENST00000534885 LTBP4Q8N2S1 1624 aa26.91■■□□□ 1.9
TNFRSF1A-205ENST00000534885 HSP90AB2PQ58FF8 381 aa26.9■■□□□ 1.9
TNFRSF1A-205ENST00000534885 IQSEC2Q5JU85 1478 aa26.9■■□□□ 1.9
TNFRSF1A-205ENST00000534885 SBNO1A3KN83 1393 aa26.89■■□□□ 1.9
TNFRSF1A-205ENST00000534885 NFAT5O94916 1531 aa26.89■■□□□ 1.89
TNFRSF1A-205ENST00000534885 PXDNQ92626 1479 aa26.89■■□□□ 1.89
TNFRSF1A-205ENST00000534885 GTF3C3Q9Y5Q9 886 aa26.88■■□□□ 1.89
TNFRSF1A-205ENST00000534885 FLT4P35916 1363 aa26.88■■□□□ 1.89
TNFRSF1A-205ENST00000534885 LTN1O94822 1766 aa26.87■■□□□ 1.89
TNFRSF1A-205ENST00000534885 EIF4A2Q14240 407 aaKnown RBP26.87■■□□□ 1.89
TNFRSF1A-205ENST00000534885 TCP11L2Q8N4U5 519 aa26.87■■□□□ 1.89
TNFRSF1A-205ENST00000534885 PLEKHF1Q96S99 279 aa26.87■■□□□ 1.89
TNFRSF1A-205ENST00000534885 ZNF521Q96K83 1311 aa26.86■■□□□ 1.89
TNFRSF1A-205ENST00000534885 PLEKHG5O94827 1062 aa26.86■■□□□ 1.89
TNFRSF1A-205ENST00000534885 AMPHP49418 695 aa26.86■■□□□ 1.89
TNFRSF1A-205ENST00000534885 SLIT3O75094 1523 aa26.85■■□□□ 1.89
TNFRSF1A-205ENST00000534885 CDCA7LQ96GN5 454 aa26.85■■□□□ 1.89
TNFRSF1A-205ENST00000534885 RRP7AQ9Y3A4 280 aaKnown RBP26.85■■□□□ 1.89
TNFRSF1A-205ENST00000534885 HMOX1P09601 288 aa26.84■■□□□ 1.89
TNFRSF1A-205ENST00000534885 USP19O94966 1318 aa26.84■■□□□ 1.89
TNFRSF1A-205ENST00000534885 PDE3BQ13370 1112 aa26.83■■□□□ 1.89
TNFRSF1A-205ENST00000534885 RSPH6AQ9H0K4 717 aa26.83■■□□□ 1.89
TNFRSF1A-205ENST00000534885 FCHSD2O94868 740 aa26.83■■□□□ 1.89
TNFRSF1A-205ENST00000534885 KCNH5Q8NCM2 988 aa26.83■■□□□ 1.89
TNFRSF1A-205ENST00000534885 GCP02774 474 aa26.82■■□□□ 1.88
TNFRSF1A-205ENST00000534885 NEUROD2Q15784 382 aa26.82■■□□□ 1.88
TNFRSF1A-205ENST00000534885 KIF24Q5T7B8 1368 aa26.82■■□□□ 1.88
TNFRSF1A-205ENST00000534885 TNS3Q68CZ2 1445 aa26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms