RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 CD163L1Q9NR16 1453 aa7.29□□□□□ -1.24
USH1C-210ENST00000534556 MYOM1P52179 1685 aa7.28□□□□□ -1.24
USH1C-210ENST00000534556 LMO7Q8WWI1 1683 aa7.28□□□□□ -1.24
USH1C-210ENST00000534556 ACEP12821 1306 aa7.28□□□□□ -1.24
USH1C-210ENST00000534556 RGS12O14924 1447 aa7.28□□□□□ -1.24
USH1C-210ENST00000534556 PPIP5K1Q6PFW1 1433 aa7.28□□□□□ -1.24
USH1C-210ENST00000534556 SSH2Q76I76 1423 aa7.28□□□□□ -1.24
USH1C-210ENST00000534556 PLEKHG3A1L390 1219 aa7.28□□□□□ -1.24
USH1C-210ENST00000534556 PSME1Q06323 249 aa7.28□□□□□ -1.24
USH1C-210ENST00000534556 USP54Q70EL1 1684 aa7.28□□□□□ -1.24
USH1C-210ENST00000534556 NUTM2GQ5VZR2 741 aa7.27□□□□□ -1.25
USH1C-210ENST00000534556 NGLY1Q96IV0 654 aa7.27□□□□□ -1.25
USH1C-210ENST00000534556 QTRT2Q9H974 415 aaKnown RBP7.27□□□□□ -1.25
USH1C-210ENST00000534556 CCDC61Q9Y6R9 512 aa7.27□□□□□ -1.25
USH1C-210ENST00000534556 LTN1O94822 1766 aa7.27□□□□□ -1.25
USH1C-210ENST00000534556 EIF3AQ14152 1382 aaKnown RBP7.26□□□□□ -1.25
USH1C-210ENST00000534556 SBNO2Q9Y2G9 1366 aa7.26□□□□□ -1.25
USH1C-210ENST00000534556 FAM83GA6ND36 823 aa7.26□□□□□ -1.25
USH1C-210ENST00000534556 LMOD2Q6P5Q4 547 aa7.26□□□□□ -1.25
USH1C-210ENST00000534556 NGDNQ8NEJ9 315 aaKnown RBP7.26□□□□□ -1.25
USH1C-210ENST00000534556 TESK2Q96S53 571 aa7.26□□□□□ -1.25
USH1C-210ENST00000534556 CARD11Q9BXL7 1154 aa7.26□□□□□ -1.25
USH1C-210ENST00000534556 CABP1Q9NZU7 370 aa7.26□□□□□ -1.25
USH1C-210ENST00000534556 WNK3Q9BYP7 1800 aa7.26□□□□□ -1.25
USH1C-210ENST00000534556 RGPD2P0DJD1 1756 aa7.25□□□□□ -1.25
USH1C-210ENST00000534556 CDK12Q9NYV4 1490 aaPredicted RBP7.25□□□□□ -1.25
USH1C-210ENST00000534556 ARHGEF10O15013 1369 aa7.25□□□□□ -1.25
USH1C-210ENST00000534556 SRPK2P78362 688 aaKnown RBP7.25□□□□□ -1.25
USH1C-210ENST00000534556 ZNF772Q68DY9 489 aaPredicted RBP7.25□□□□□ -1.25
USH1C-210ENST00000534556 USP21Q9UK80 565 aa7.25□□□□□ -1.25
USH1C-210ENST00000534556 SLIT3O75094 1523 aa7.25□□□□□ -1.25
USH1C-210ENST00000534556 USP6P35125 1406 aa7.25□□□□□ -1.25
USH1C-210ENST00000534556 CPSF1Q10570 1443 aaKnown RBP7.25□□□□□ -1.25
USH1C-210ENST00000534556 CAMTA1Q9Y6Y1 1673 aa7.25□□□□□ -1.25
USH1C-210ENST00000534556 ST20-MTHFSA0A0A6YYL1 179 aa7.24□□□□□ -1.25
USH1C-210ENST00000534556 PAK3O75914 559 aaPredicted RBP7.24□□□□□ -1.25
USH1C-210ENST00000534556 RXRBP28702 533 aa7.24□□□□□ -1.25
USH1C-210ENST00000534556 ZRANB1Q9UGI0 708 aa7.24□□□□□ -1.25
USH1C-210ENST00000534556 THSD7AQ9UPZ6 1657 aa7.24□□□□□ -1.25
USH1C-210ENST00000534556 USP19O94966 1318 aa7.24□□□□□ -1.25
USH1C-210ENST00000534556 EVC2Q86UK5 1308 aa7.24□□□□□ -1.25
USH1C-210ENST00000534556 NFAT5O94916 1531 aa7.23□□□□□ -1.25
USH1C-210ENST00000534556 KIF20BQ96Q89 1820 aa7.23□□□□□ -1.25
USH1C-210ENST00000534556 RBM6P78332 1123 aaKnown RBP7.23□□□□□ -1.25
USH1C-210ENST00000534556 SBF2Q86WG5 1849 aa7.22□□□□□ -1.25
USH1C-210ENST00000534556 KIAA0232Q92628 1395 aa7.22□□□□□ -1.25
USH1C-210ENST00000534556 ZC3H6P61129 1189 aaKnown RBP7.22□□□□□ -1.25
USH1C-210ENST00000534556 CHRNA2Q15822 529 aa7.22□□□□□ -1.25
USH1C-210ENST00000534556 UNC5CLQ8IV45 518 aa7.22□□□□□ -1.25
USH1C-210ENST00000534556 SLC12A5Q9H2X9 1139 aa7.22□□□□□ -1.25
USH1C-210ENST00000534556 USP47Q96K76 1375 aa7.21□□□□□ -1.25
USH1C-210ENST00000534556 ABTB2Q8N961 1025 aa7.21□□□□□ -1.26
USH1C-210ENST00000534556 UPF1Q92900 1129 aaKnown RBP eCLIP7.21□□□□□ -1.26
USH1C-210ENST00000534556 GJD4Q96KN9 370 aaPredicted RBP7.21□□□□□ -1.26
USH1C-210ENST00000534556 TRPC5Q9UL62 973 aaPredicted RBP7.21□□□□□ -1.26
USH1C-210ENST00000534556 TTC21BQ7Z4L5 1316 aa7.21□□□□□ -1.26
USH1C-210ENST00000534556 CLSPNQ9HAW4 1339 aa7.21□□□□□ -1.26
USH1C-210ENST00000534556 TNS1Q9HBL0 1735 aaKnown RBP7.21□□□□□ -1.26
USH1C-210ENST00000534556 MAP2P11137 1827 aaKnown RBP7.2□□□□□ -1.26
USH1C-210ENST00000534556 VPS72Q15906 364 aa7.2□□□□□ -1.26
USH1C-210ENST00000534556 BTG4Q9NY30 223 aa7.2□□□□□ -1.26
USH1C-210ENST00000534556 PARP4Q9UKK3 1724 aaKnown RBP7.2□□□□□ -1.26
USH1C-210ENST00000534556 A0A1W2PP64 1363 aa7.2□□□□□ -1.26
USH1C-210ENST00000534556 ATAD2Q6PL18 1390 aa7.2□□□□□ -1.26
USH1C-210ENST00000534556 ONECUT3O60422 494 aaPredicted RBP7.19□□□□□ -1.26
USH1C-210ENST00000534556 GCP02774 474 aa7.19□□□□□ -1.26
USH1C-210ENST00000534556 CCER1Q8TC90 406 aaPredicted RBP7.19□□□□□ -1.26
USH1C-210ENST00000534556 CPDO75976 1380 aa7.19□□□□□ -1.26
USH1C-210ENST00000534556 KTN1Q86UP2 1357 aaKnown RBP7.19□□□□□ -1.26
USH1C-210ENST00000534556 PEAK1Q9H792 1746 aa7.18□□□□□ -1.26
USH1C-210ENST00000534556 COL5A2P05997 1499 aaPredicted RBP7.18□□□□□ -1.26
USH1C-210ENST00000534556 HAP1P54257 671 aaPredicted RBP7.18□□□□□ -1.26
USH1C-210ENST00000534556 NME9Q86XW9 330 aa7.18□□□□□ -1.26
USH1C-210ENST00000534556 AXIN2Q9Y2T1 843 aa7.18□□□□□ -1.26
USH1C-210ENST00000534556 LRRC37A3O60309 1634 aa7.18□□□□□ -1.26
USH1C-210ENST00000534556 SPATA31A5Q5VU36 1347 aa7.18□□□□□ -1.26
USH1C-210ENST00000534556 SPATA31A7Q8IWB4 1347 aa7.18□□□□□ -1.26
USH1C-210ENST00000534556 BRD4O60885 1362 aaPredicted RBP7.18□□□□□ -1.26
USH1C-210ENST00000534556 ANKRD26Q9UPS8 1709 aa7.18□□□□□ -1.26
USH1C-210ENST00000534556 OVOS2A0A0J9YW53 1432 aa7.18□□□□□ -1.26
USH1C-210ENST00000534556 OVOS2Q6IE36 1432 aa7.18□□□□□ -1.26
USH1C-210ENST00000534556 C11orf95C9JLR9 678 aaPredicted RBP7.17□□□□□ -1.26
USH1C-210ENST00000534556 FBLN1P23142 703 aa7.17□□□□□ -1.26
USH1C-210ENST00000534556 NLRP6P59044 892 aa7.17□□□□□ -1.26
USH1C-210ENST00000534556 NLRP13Q86W25 1043 aa7.17□□□□□ -1.26
USH1C-210ENST00000534556 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.17□□□□□ -1.26
USH1C-210ENST00000534556 PRDM11Q9NQV5 511 aa7.17□□□□□ -1.26
USH1C-210ENST00000534556 TIMELESSQ9UNS1 1208 aa7.17□□□□□ -1.26
USH1C-210ENST00000534556 SHANK3Q9BYB0 1731 aa7.17□□□□□ -1.26
USH1C-210ENST00000534556 USP31Q70CQ4 1352 aa7.17□□□□□ -1.26
USH1C-210ENST00000534556 EDC4Q6P2E9 1401 aaKnown RBP7.17□□□□□ -1.26
USH1C-210ENST00000534556 KAT6BQ8WYB5 2073 aa7.16□□□□□ -1.26
USH1C-210ENST00000534556 FAM208AQ9UK61 1670 aaKnown RBP7.16□□□□□ -1.26
USH1C-210ENST00000534556 FAM98CQ17RN3 349 aaKnown RBP7.16□□□□□ -1.26
USH1C-210ENST00000534556 FAM182BQ5T319 152 aa7.16□□□□□ -1.26
USH1C-210ENST00000534556 LARP1Q6PKG0 1096 aaKnown RBP7.16□□□□□ -1.26
USH1C-210ENST00000534556 ARHGEF25Q86VW2 580 aa7.16□□□□□ -1.26
USH1C-210ENST00000534556 SEPT12Q8IYM1 358 aa7.16□□□□□ -1.26
USH1C-210ENST00000534556 TMC1Q8TDI8 760 aa7.16□□□□□ -1.26
USH1C-210ENST00000534556 PUS7Q96PZ0 661 aaKnown RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms