RNA–Protein interactions for RNA: ENST00000533115.5

SSSCA1-207, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3

Gene SSSCA1, Length 1,077 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-207ENST00000533115 PPIP5K1Q6PFW1 1433 aa43.15■■■■■ 4.5
SSSCA1-207ENST00000533115 CARD11Q9BXL7 1154 aa43.15■■■■■ 4.5
SSSCA1-207ENST00000533115 SLIT2O94813 1529 aa43.15■■■■■ 4.5
SSSCA1-207ENST00000533115 EVC2Q86UK5 1308 aa43.15■■■■■ 4.5
SSSCA1-207ENST00000533115 RGS12O14924 1447 aa43.13■■■■■ 4.49
SSSCA1-207ENST00000533115 UNC5CLQ8IV45 518 aa43.1■■■■■ 4.49
SSSCA1-207ENST00000533115 TNKS1BP1Q9C0C2 1729 aaKnown RBP43.1■■■■■ 4.49
SSSCA1-207ENST00000533115 PCGF6Q9BYE7 350 aa43.07■■■■■ 4.49
SSSCA1-207ENST00000533115 CABP1Q9NZU7 370 aa43.05■■■■■ 4.48
SSSCA1-207ENST00000533115 CRYBG1Q9Y4K1 1723 aa43.04■■■■■ 4.48
SSSCA1-207ENST00000533115 FAM83GA6ND36 823 aa43.03■■■■■ 4.48
SSSCA1-207ENST00000533115 PLCH1Q4KWH8 1693 aa43.02■■■■■ 4.48
SSSCA1-207ENST00000533115 GJD4Q96KN9 370 aaPredicted RBP43.02■■■■■ 4.48
SSSCA1-207ENST00000533115 SBNO2Q9Y2G9 1366 aa43.01■■■■■ 4.48
SSSCA1-207ENST00000533115 NWD2Q9ULI1 1742 aa43■■■■■ 4.47
SSSCA1-207ENST00000533115 NUTM2GQ5VZR2 741 aa42.97■■■■■ 4.47
SSSCA1-207ENST00000533115 BRD4O60885 1362 aaPredicted RBP42.95■■■■■ 4.47
SSSCA1-207ENST00000533115 ABTB2Q8N961 1025 aa42.95■■■■■ 4.47
SSSCA1-207ENST00000533115 CLSPNQ9HAW4 1339 aa42.94■■■■■ 4.46
SSSCA1-207ENST00000533115 COL14A1Q05707 1796 aaKnown RBP42.93■■■■■ 4.46
SSSCA1-207ENST00000533115 VPS72Q15906 364 aa42.92■■■■■ 4.46
SSSCA1-207ENST00000533115 UPF1Q92900 1129 aaKnown RBP eCLIP42.92■■■■■ 4.461e-7■■■■□ 23.9
SSSCA1-207ENST00000533115 PHRF1Q9P1Y6 1649 aaKnown RBP42.92■■■■■ 4.46
SSSCA1-207ENST00000533115 ATAD2Q6PL18 1390 aa42.91■■■■■ 4.46
SSSCA1-207ENST00000533115 USP6P35125 1406 aa42.91■■■■■ 4.46
SSSCA1-207ENST00000533115 GLI3P10071 1580 aa42.9■■■■■ 4.46
SSSCA1-207ENST00000533115 BTG4Q9NY30 223 aa42.89■■■■■ 4.46
SSSCA1-207ENST00000533115 PRDM11Q9NQV5 511 aa42.88■■■■■ 4.45
SSSCA1-207ENST00000533115 NRAPQ86VF7 1730 aa42.85■■■■■ 4.45
SSSCA1-207ENST00000533115 NLRP13Q86W25 1043 aa42.84■■■■■ 4.45
SSSCA1-207ENST00000533115 KIAA0232Q92628 1395 aa42.84■■■■■ 4.45
SSSCA1-207ENST00000533115 TIMELESSQ9UNS1 1208 aa42.84■■■■■ 4.45
SSSCA1-207ENST00000533115 CCDC9Q9Y3X0 531 aaKnown RBP42.84■■■■■ 4.45
SSSCA1-207ENST00000533115 USP19O94966 1318 aa42.83■■■■■ 4.45
SSSCA1-207ENST00000533115 ZNF692Q9BU19 519 aaPredicted RBP42.83■■■■■ 4.45
SSSCA1-207ENST00000533115 SSH2Q76I76 1423 aa42.82■■■■■ 4.45
SSSCA1-207ENST00000533115 ZC3H6P61129 1189 aaKnown RBP42.81■■■■■ 4.44
SSSCA1-207ENST00000533115 NRKQ7Z2Y5 1582 aa42.79■■■■■ 4.44
SSSCA1-207ENST00000533115 AKAP12Q02952 1782 aa42.78■■■■■ 4.44
SSSCA1-207ENST00000533115 ST20-MTHFSA0A0A6YYL1 179 aa42.77■■■■■ 4.44
SSSCA1-207ENST00000533115 CHRNA2Q15822 529 aa42.77■■■■■ 4.44
SSSCA1-207ENST00000533115 CPSF1Q10570 1443 aaKnown RBP42.77■■■■■ 4.44
SSSCA1-207ENST00000533115 GCP02774 474 aa42.74■■■■■ 4.43
SSSCA1-207ENST00000533115 NLRP6P59044 892 aa42.74■■■■■ 4.43
SSSCA1-207ENST00000533115 TESK2Q96S53 571 aa42.74■■■■■ 4.43
SSSCA1-207ENST00000533115 TTC21BQ7Z4L5 1316 aa42.72■■■■■ 4.43
SSSCA1-207ENST00000533115 ONECUT3O60422 494 aaPredicted RBP42.72■■■■■ 4.43
SSSCA1-207ENST00000533115 CPDO75976 1380 aa42.72■■■■■ 4.43
SSSCA1-207ENST00000533115 PIK3C2AO00443 1686 aa42.71■■■■■ 4.43
SSSCA1-207ENST00000533115 KTN1Q86UP2 1357 aaKnown RBP42.71■■■■■ 4.43
SSSCA1-207ENST00000533115 PUS7Q96PZ0 661 aaKnown RBP42.71■■■■■ 4.43
SSSCA1-207ENST00000533115 SEPT12Q8IYM1 358 aa42.7■■■■■ 4.43
SSSCA1-207ENST00000533115 SLC24A1O60721 1099 aa42.69■■■■■ 4.42
SSSCA1-207ENST00000533115 TMC1Q8TDI8 760 aa42.68■■■■■ 4.42
SSSCA1-207ENST00000533115 TTC21AQ8NDW8 1320 aa42.68■■■■■ 4.42
SSSCA1-207ENST00000533115 CCER1Q8TC90 406 aaPredicted RBP42.67■■■■■ 4.42
SSSCA1-207ENST00000533115 SPATA31A5Q5VU36 1347 aa42.66■■■■■ 4.42
SSSCA1-207ENST00000533115 SPATA31A7Q8IWB4 1347 aa42.66■■■■■ 4.42
SSSCA1-207ENST00000533115 SLIT3O75094 1523 aa42.66■■■■■ 4.42
SSSCA1-207ENST00000533115 USP47Q96K76 1375 aa42.65■■■■■ 4.42
SSSCA1-207ENST00000533115 CD163L1Q9NR16 1453 aa42.64■■■■■ 4.42
SSSCA1-207ENST00000533115 MON2Q7Z3U7 1717 aa42.64■■■■■ 4.42
SSSCA1-207ENST00000533115 BRWD3Q6RI45 1802 aa42.63■■■■■ 4.41
SSSCA1-207ENST00000533115 SLC12A5Q9H2X9 1139 aa42.63■■■■■ 4.41
SSSCA1-207ENST00000533115 FAM98CQ17RN3 349 aaKnown RBP42.62■■■■■ 4.41
SSSCA1-207ENST00000533115 STRN4Q9NRL3 753 aa42.62■■■■■ 4.41
SSSCA1-207ENST00000533115 HDGFL2Q7Z4V5 671 aaPredicted RBP42.6■■■■■ 4.41
SSSCA1-207ENST00000533115 LMO7Q8WWI1 1683 aa42.6■■■■■ 4.41
SSSCA1-207ENST00000533115 CAMTA1Q9Y6Y1 1673 aa42.59■■■■■ 4.41
SSSCA1-207ENST00000533115 EVA1CP58658 441 aa42.58■■■■■ 4.41
SSSCA1-207ENST00000533115 EP400Q96L91 3159 aa42.58■■■■■ 4.41
SSSCA1-207ENST00000533115 A0A0G2JS52 829 aa42.57■■■■■ 4.41
SSSCA1-207ENST00000533115 MYT1Q01538 1121 aa42.57■■■■■ 4.41
SSSCA1-207ENST00000533115 SPATA31A1Q5TZJ5 1347 aa42.56■■■■■ 4.4
SSSCA1-207ENST00000533115 TERF2IPQ9NYB0 399 aa42.56■■■■■ 4.4
SSSCA1-207ENST00000533115 SUGP2Q8IX01 1082 aaKnown RBP eCLIP42.54■■■■■ 4.4
SSSCA1-207ENST00000533115 ZBTB7CA1YPR0 619 aa42.53■■■■■ 4.4
SSSCA1-207ENST00000533115 KRT27Q7Z3Y8 459 aa42.53■■■■■ 4.4
SSSCA1-207ENST00000533115 NINLQ9Y2I6 1382 aa42.52■■■■■ 4.4
SSSCA1-207ENST00000533115 TMF1P82094 1093 aa42.52■■■■■ 4.4
SSSCA1-207ENST00000533115 KCNH5Q8NCM2 988 aa42.52■■■■■ 4.4
SSSCA1-207ENST00000533115 A0A1W2PP64 1363 aa42.52■■■■■ 4.4
SSSCA1-207ENST00000533115 AATKQ6ZMQ8 1374 aa42.5■■■■■ 4.39
SSSCA1-207ENST00000533115 EDC4Q6P2E9 1401 aaKnown RBP42.49■■■■■ 4.39
SSSCA1-207ENST00000533115 LARP1Q6PKG0 1096 aaKnown RBP42.48■■■■■ 4.39
SSSCA1-207ENST00000533115 CCDC125Q86Z20 511 aa42.48■■■■■ 4.39
SSSCA1-207ENST00000533115 USP31Q70CQ4 1352 aa42.47■■■■■ 4.39
SSSCA1-207ENST00000533115 THSD7AQ9UPZ6 1657 aa42.47■■■■■ 4.39
SSSCA1-207ENST00000533115 NME9Q86XW9 330 aa42.46■■■■■ 4.39
SSSCA1-207ENST00000533115 ZRANB1Q9UGI0 708 aa42.46■■■■■ 4.39
SSSCA1-207ENST00000533115 COL5A2P05997 1499 aaPredicted RBP42.46■■■■■ 4.39
SSSCA1-207ENST00000533115 USP35Q9P2H5 1018 aa42.45■■■■■ 4.39
SSSCA1-207ENST00000533115 SOX12O15370 315 aa42.44■■■■■ 4.38
SSSCA1-207ENST00000533115 ARHGEF25Q86VW2 580 aa42.44■■■■■ 4.38
SSSCA1-207ENST00000533115 USP54Q70EL1 1684 aa42.42■■■■■ 4.38
SSSCA1-207ENST00000533115 COL18A1P39060 1754 aa42.42■■■■■ 4.38
SSSCA1-207ENST00000533115 NFAT5O94916 1531 aa42.41■■■■■ 4.38
SSSCA1-207ENST00000533115 BARGINQ6ZT62 677 aa42.39■■■■■ 4.38
SSSCA1-207ENST00000533115 CDCA8Q53HL2 280 aa42.38■■■■■ 4.37
SSSCA1-207ENST00000533115 TCP11L2Q8N4U5 519 aa42.38■■■■■ 4.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms