RNA–Protein interactions for RNA: ENST00000531158.1

CHMP4A-205, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 4

Gene CHMP4A, Length 563 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-205ENST00000531158 KRT27Q7Z3Y8 459 aa13.71□□□□□ -0.21
CHMP4A-205ENST00000531158 PSME1Q06323 249 aa13.7□□□□□ -0.22
CHMP4A-205ENST00000531158 HAP1P54257 671 aaPredicted RBP13.68□□□□□ -0.22
CHMP4A-205ENST00000531158 LMOD2Q6P5Q4 547 aa13.68□□□□□ -0.22
CHMP4A-205ENST00000531158 HIRIP3Q9BW71 556 aaPredicted RBP13.68□□□□□ -0.22
CHMP4A-205ENST00000531158 ATP7BP35670 1465 aa13.67□□□□□ -0.22
CHMP4A-205ENST00000531158 RAB3GAP2Q9H2M9 1393 aa13.67□□□□□ -0.22
CHMP4A-205ENST00000531158 ACIN1Q9UKV3 1341 aaKnown RBP13.66□□□□□ -0.22
CHMP4A-205ENST00000531158 RREB1Q92766 1687 aa13.66□□□□□ -0.22
CHMP4A-205ENST00000531158 FAM98CQ17RN3 349 aaKnown RBP13.66□□□□□ -0.22
CHMP4A-205ENST00000531158 ZNF784Q8NCA9 323 aaPredicted RBP13.66□□□□□ -0.22
CHMP4A-205ENST00000531158 BTG4Q9NY30 223 aa13.66□□□□□ -0.22
CHMP4A-205ENST00000531158 CCDC9Q9Y3X0 531 aaKnown RBP13.66□□□□□ -0.22
CHMP4A-205ENST00000531158 MINK1Q8N4C8 1332 aaPredicted RBP13.65□□□□□ -0.22
CHMP4A-205ENST00000531158 A0A0G2JS52 829 aa13.65□□□□□ -0.22
CHMP4A-205ENST00000531158 C1QTNF8P60827 252 aa13.65□□□□□ -0.22
CHMP4A-205ENST00000531158 MYT1Q01538 1121 aa13.65□□□□□ -0.22
CHMP4A-205ENST00000531158 FAM182BQ5T319 152 aa13.65□□□□□ -0.22
CHMP4A-205ENST00000531158 POGKQ9P215 609 aa13.65□□□□□ -0.22
CHMP4A-205ENST00000531158 PPP1R1BQ9UD71 204 aaPredicted RBP13.65□□□□□ -0.22
CHMP4A-205ENST00000531158 TRAK1Q9UPV9 953 aa13.65□□□□□ -0.22
CHMP4A-205ENST00000531158 NRKQ7Z2Y5 1582 aa13.65□□□□□ -0.22
CHMP4A-205ENST00000531158 LMO7Q8WWI1 1683 aa13.64□□□□□ -0.23
CHMP4A-205ENST00000531158 NUP188Q5SRE5 1749 aa13.64□□□□□ -0.23
CHMP4A-205ENST00000531158 SPATA31A5Q5VU36 1347 aa13.64□□□□□ -0.23
CHMP4A-205ENST00000531158 SPATA31A7Q8IWB4 1347 aa13.64□□□□□ -0.23
CHMP4A-205ENST00000531158 DISP2A7MBM2 1401 aa13.63□□□□□ -0.23
CHMP4A-205ENST00000531158 KIAA1210Q9ULL0 1709 aa13.62□□□□□ -0.23
CHMP4A-205ENST00000531158 WASLO00401 505 aaPredicted RBP13.62□□□□□ -0.23
CHMP4A-205ENST00000531158 EZH2Q15910 746 aaKnown RBP13.62□□□□□ -0.23
CHMP4A-205ENST00000531158 GPRASP1Q5JY77 1395 aa13.61□□□□□ -0.23
CHMP4A-205ENST00000531158 EIF3AQ14152 1382 aaKnown RBP13.6□□□□□ -0.23
CHMP4A-205ENST00000531158 KIAA0232Q92628 1395 aa13.6□□□□□ -0.23
CHMP4A-205ENST00000531158 PARP4Q9UKK3 1724 aaKnown RBP13.59□□□□□ -0.23
CHMP4A-205ENST00000531158 DCAF11Q8TEB1 546 aa13.59□□□□□ -0.23
CHMP4A-205ENST00000531158 KDM2AQ9Y2K7 1162 aa13.59□□□□□ -0.23
CHMP4A-205ENST00000531158 SBF2Q86WG5 1849 aa13.59□□□□□ -0.23
CHMP4A-205ENST00000531158 WNK3Q9BYP7 1800 aa13.59□□□□□ -0.23
CHMP4A-205ENST00000531158 CAMTA1Q9Y6Y1 1673 aa13.59□□□□□ -0.23
CHMP4A-205ENST00000531158 SPATA31A1Q5TZJ5 1347 aa13.58□□□□□ -0.24
CHMP4A-205ENST00000531158 PEAK1Q9H792 1746 aa13.57□□□□□ -0.24
CHMP4A-205ENST00000531158 CHRNA2Q15822 529 aa13.57□□□□□ -0.24
CHMP4A-205ENST00000531158 PRDM11Q9NQV5 511 aa13.57□□□□□ -0.24
CHMP4A-205ENST00000531158 POLR3AO14802 1390 aaPredicted RBP13.57□□□□□ -0.24
CHMP4A-205ENST00000531158 NINLQ9Y2I6 1382 aa13.57□□□□□ -0.24
CHMP4A-205ENST00000531158 PAK3O75914 559 aaPredicted RBP13.56□□□□□ -0.24
CHMP4A-205ENST00000531158 NGDNQ8NEJ9 315 aaKnown RBP13.56□□□□□ -0.24
CHMP4A-205ENST00000531158 NUDT16Q96DE0 195 aaKnown RBP13.56□□□□□ -0.24
CHMP4A-205ENST00000531158 SPON1Q9HCB6 807 aa13.56□□□□□ -0.24
CHMP4A-205ENST00000531158 QRICH2Q9H0J4 1663 aa13.56□□□□□ -0.24
CHMP4A-205ENST00000531158 CAMKK2Q96RR4 588 aa13.55□□□□□ -0.24
CHMP4A-205ENST00000531158 SSH2Q76I76 1423 aa13.55□□□□□ -0.24
CHMP4A-205ENST00000531158 LRRC37A3O60309 1634 aa13.54□□□□□ -0.24
CHMP4A-205ENST00000531158 COL18A1P39060 1754 aa13.54□□□□□ -0.24
CHMP4A-205ENST00000531158 RGPD5Q99666 1765 aa13.54□□□□□ -0.24
CHMP4A-205ENST00000531158 NUTM2GQ5VZR2 741 aa13.54□□□□□ -0.24
CHMP4A-205ENST00000531158 RGPD3A6NKT7 1758 aaPredicted RBP13.53□□□□□ -0.24
CHMP4A-205ENST00000531158 RGPD4Q7Z3J3 1758 aa13.53□□□□□ -0.24
CHMP4A-205ENST00000531158 KCNQ2O43526 872 aa13.53□□□□□ -0.24
CHMP4A-205ENST00000531158 ZC3H6P61129 1189 aaKnown RBP13.53□□□□□ -0.24
CHMP4A-205ENST00000531158 PIK3C2AO00443 1686 aa13.53□□□□□ -0.24
CHMP4A-205ENST00000531158 TRIM37O94972 964 aa13.52□□□□□ -0.25
CHMP4A-205ENST00000531158 NBPF8Q3BBV2 869 aa13.52□□□□□ -0.25
CHMP4A-205ENST00000531158 NBPF14Q5TI25 921 aa13.52□□□□□ -0.25
CHMP4A-205ENST00000531158 CDK19Q9BWU1 502 aa13.52□□□□□ -0.25
CHMP4A-205ENST00000531158 STRN4Q9NRL3 753 aa13.52□□□□□ -0.25
CHMP4A-205ENST00000531158 ACEP12821 1306 aa13.52□□□□□ -0.25
CHMP4A-205ENST00000531158 USP19O94966 1318 aa13.51□□□□□ -0.25
CHMP4A-205ENST00000531158 COL5A2P05997 1499 aaPredicted RBP13.5□□□□□ -0.25
CHMP4A-205ENST00000531158 CPDO75976 1380 aa13.5□□□□□ -0.25
CHMP4A-205ENST00000531158 APBA3O96018 575 aa13.5□□□□□ -0.25
CHMP4A-205ENST00000531158 AKAP12Q02952 1782 aa13.5□□□□□ -0.25
CHMP4A-205ENST00000531158 SLIT3O75094 1523 aa13.49□□□□□ -0.25
CHMP4A-205ENST00000531158 PLEKHG3A1L390 1219 aa13.49□□□□□ -0.25
CHMP4A-205ENST00000531158 LARP1Q6PKG0 1096 aaKnown RBP13.49□□□□□ -0.25
CHMP4A-205ENST00000531158 USP35Q9P2H5 1018 aa13.49□□□□□ -0.25
CHMP4A-205ENST00000531158 CASZ1Q86V15 1759 aa13.49□□□□□ -0.25
CHMP4A-205ENST00000531158 NBPF1Q3BBV0 1214 aa13.48□□□□□ -0.25
CHMP4A-205ENST00000531158 FAM196AQ6ZSG2 479 aa13.48□□□□□ -0.25
CHMP4A-205ENST00000531158 BARGINQ6ZT62 677 aa13.48□□□□□ -0.25
CHMP4A-205ENST00000531158 STAC3Q96MF2 364 aa13.48□□□□□ -0.25
CHMP4A-205ENST00000531158 PPIP5K1Q6PFW1 1433 aa13.47□□□□□ -0.25
CHMP4A-205ENST00000531158 PARD3Q8TEW0 1356 aa13.47□□□□□ -0.25
CHMP4A-205ENST00000531158 CCDC61Q9Y6R9 512 aa13.47□□□□□ -0.25
CHMP4A-205ENST00000531158 UTRNP46939 3433 aa13.47□□□□□ -0.25
CHMP4A-205ENST00000531158 GIGYF1O75420 1035 aaPredicted RBP13.46□□□□□ -0.25
CHMP4A-205ENST00000531158 TRPM1Q7Z4N2 1603 aa13.46□□□□□ -0.26
CHMP4A-205ENST00000531158 ABTB2Q8N961 1025 aa13.45□□□□□ -0.26
CHMP4A-205ENST00000531158 CEP350Q5VT06 3117 aa13.44□□□□□ -0.26
CHMP4A-205ENST00000531158 TCP11L2Q8N4U5 519 aa13.44□□□□□ -0.26
CHMP4A-205ENST00000531158 USP6P35125 1406 aa13.44□□□□□ -0.26
CHMP4A-205ENST00000531158 CRB1P82279 1406 aa13.44□□□□□ -0.26
CHMP4A-205ENST00000531158 GCP02774 474 aa13.43□□□□□ -0.26
CHMP4A-205ENST00000531158 EVA1CP58658 441 aa13.42□□□□□ -0.26
CHMP4A-205ENST00000531158 PDE3BQ13370 1112 aa13.42□□□□□ -0.26
CHMP4A-205ENST00000531158 PTF1AQ7RTS3 328 aa13.42□□□□□ -0.26
CHMP4A-205ENST00000531158 CABP2Q9NPB3 220 aa13.42□□□□□ -0.26
CHMP4A-205ENST00000531158 MON2Q7Z3U7 1717 aa13.42□□□□□ -0.26
CHMP4A-205ENST00000531158 MYOM1P52179 1685 aa13.41□□□□□ -0.26
CHMP4A-205ENST00000531158 USP54Q70EL1 1684 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms