RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 PTCRAQ6ISU1 281 aaPredicted RBP10.01□□□□□ -0.81
CD44-231ENST00000531110 EMID1Q96A84 441 aaPredicted RBP10.01□□□□□ -0.81
CD44-231ENST00000531110 LIAT1Q6ZQX7 453 aa10□□□□□ -0.81
CD44-231ENST00000531110 FKBPLQ9UIM3 349 aa10□□□□□ -0.81
CD44-231ENST00000531110 NDUFB9Q9Y6M9 179 aa10□□□□□ -0.81
CD44-231ENST00000531110 NR6A1Q15406 480 aa9.99□□□□□ -0.81
CD44-231ENST00000531110 SPRYD7Q5W111 196 aa9.99□□□□□ -0.81
CD44-231ENST00000531110 PRKD2Q9BZL6 878 aa9.99□□□□□ -0.81
CD44-231ENST00000531110 GPSM3Q9Y4H4 160 aa9.99□□□□□ -0.81
CD44-231ENST00000531110 PDXDC2PQ6P474 469 aa9.97□□□□□ -0.81
CD44-231ENST00000531110 ZNF598Q86UK7 904 aaKnown RBP9.97□□□□□ -0.81
CD44-231ENST00000531110 ZNF511Q8NB15 262 aa9.96□□□□□ -0.82
CD44-231ENST00000531110 EPS8L1Q8TE68 723 aa9.95□□□□□ -0.82
CD44-231ENST00000531110 ERICH6Q7L0X2 663 aa9.94□□□□□ -0.82
CD44-231ENST00000531110 GPR37L1O60883 481 aa9.93□□□□□ -0.82
CD44-231ENST00000531110 SH3BP2P78314 561 aa9.93□□□□□ -0.82
CD44-231ENST00000531110 SH3BP5LQ7L8J4 393 aa9.93□□□□□ -0.82
CD44-231ENST00000531110 SH3RF1Q7Z6J0 888 aa9.93□□□□□ -0.82
CD44-231ENST00000531110 BPHLQ86WA6 291 aaPredicted RBP9.93□□□□□ -0.82
CD44-231ENST00000531110 BAP1Q92560 729 aa9.93□□□□□ -0.82
CD44-231ENST00000531110 WNT7AO00755 349 aa9.92□□□□□ -0.82
CD44-231ENST00000531110 UBTFP17480 764 aaKnown RBP9.92□□□□□ -0.82
CD44-231ENST00000531110 ZNF697Q5TEC3 545 aa9.92□□□□□ -0.82
CD44-231ENST00000531110 RAD21O60216 631 aa9.91□□□□□ -0.82
CD44-231ENST00000531110 SKOR1P84550 965 aa9.91□□□□□ -0.82
CD44-231ENST00000531110 PTK2Q05397 1052 aa9.91□□□□□ -0.82
CD44-231ENST00000531110 COG6Q9Y2V7 657 aa9.91□□□□□ -0.82
CD44-231ENST00000531110 VARSP26640 1264 aaKnown RBP9.9□□□□□ -0.82
CD44-231ENST00000531110 PRR20EP86478 221 aa9.9□□□□□ -0.82
CD44-231ENST00000531110 PRR20CP86479 221 aa9.9□□□□□ -0.82
CD44-231ENST00000531110 PRR20DP86480 221 aa9.9□□□□□ -0.82
CD44-231ENST00000531110 PRR20BP86481 221 aa9.9□□□□□ -0.82
CD44-231ENST00000531110 PRR20AP86496 221 aa9.9□□□□□ -0.82
CD44-231ENST00000531110 MPNDQ8N594 471 aa9.9□□□□□ -0.82
CD44-231ENST00000531110 ZNF592Q92610 1267 aa9.9□□□□□ -0.82
CD44-231ENST00000531110 TBC1D2BQ9UPU7 963 aa9.9□□□□□ -0.82
CD44-231ENST00000531110 A6NJR5 290 aa9.89□□□□□ -0.83
CD44-231ENST00000531110 C1QTNF2Q9BXJ5 285 aa9.89□□□□□ -0.83
CD44-231ENST00000531110 LINC01559Q495D7 138 aa9.88□□□□□ -0.83
CD44-231ENST00000531110 RC3H1Q5TC82 1133 aaKnown RBP9.88□□□□□ -0.83
CD44-231ENST00000531110 WWC1Q8IX03 1113 aa9.88□□□□□ -0.83
CD44-231ENST00000531110 ZBBXA8MT70 800 aa9.87□□□□□ -0.83
CD44-231ENST00000531110 WASHC4Q2M389 1173 aa9.87□□□□□ -0.83
CD44-231ENST00000531110 TRMT44Q8IYL2 757 aaKnown RBP9.87□□□□□ -0.83
CD44-231ENST00000531110 GDPD2Q9HCC8 539 aa9.87□□□□□ -0.83
CD44-231ENST00000531110 GDF9O60383 454 aa9.86□□□□□ -0.83
CD44-231ENST00000531110 MCCD1P59942 119 aaPredicted RBP9.86□□□□□ -0.83
CD44-231ENST00000531110 ARHGAP9Q9BRR9 750 aa9.86□□□□□ -0.83
CD44-231ENST00000531110 PKD2L1Q9P0L9 805 aa9.86□□□□□ -0.83
CD44-231ENST00000531110 NR1H3Q13133 447 aa9.85□□□□□ -0.83
CD44-231ENST00000531110 IRF5Q13568 498 aa9.85□□□□□ -0.83
CD44-231ENST00000531110 EHBP1Q8NDI1 1231 aa9.85□□□□□ -0.83
CD44-231ENST00000531110 FAM174AQ8TBP5 190 aa9.85□□□□□ -0.83
CD44-231ENST00000531110 FOXJ1Q92949 421 aa9.85□□□□□ -0.83
CD44-231ENST00000531110 CDV3Q9UKY7 258 aaKnown RBP9.85□□□□□ -0.83
CD44-231ENST00000531110 ZNF330Q9Y3S2 320 aaPredicted RBP9.85□□□□□ -0.83
CD44-231ENST00000531110 C4orf48Q5BLP8 95 aa9.84□□□□□ -0.83
CD44-231ENST00000531110 OCSTAMPQ9BR26 566 aa9.84□□□□□ -0.83
CD44-231ENST00000531110 MAP4K5Q9Y4K4 846 aa9.84□□□□□ -0.83
CD44-231ENST00000531110 SIAH2O43255 324 aa9.83□□□□□ -0.84
CD44-231ENST00000531110 FBXO45P0C2W1 286 aa9.83□□□□□ -0.84
CD44-231ENST00000531110 AGERQ15109 404 aa9.83□□□□□ -0.84
CD44-231ENST00000531110 TRIM67Q6ZTA4 783 aa9.83□□□□□ -0.84
CD44-231ENST00000531110 POM121Q96HA1 1249 aa9.83□□□□□ -0.84
CD44-231ENST00000531110 SOX11P35716 441 aa9.82□□□□□ -0.84
CD44-231ENST00000531110 ABL2P42684 1182 aa9.82□□□□□ -0.84
CD44-231ENST00000531110 ERFEQ4G0M1 354 aa9.82□□□□□ -0.84
CD44-231ENST00000531110 ZBTB33Q86T24 672 aa9.82□□□□□ -0.84
CD44-231ENST00000531110 FNBP4Q8N3X1 1017 aaPredicted RBP9.82□□□□□ -0.84
CD44-231ENST00000531110 MRGPRX2Q96LB1 330 aa9.82□□□□□ -0.84
CD44-231ENST00000531110 CDK15Q96Q40 435 aa9.82□□□□□ -0.84
CD44-231ENST00000531110 LAPTM4AQ15012 233 aa9.81□□□□□ -0.84
CD44-231ENST00000531110 PROSER2Q86WR7 435 aaPredicted RBP9.81□□□□□ -0.84
CD44-231ENST00000531110 SNIP1Q8TAD8 396 aaKnown RBP9.81□□□□□ -0.84
CD44-231ENST00000531110 ADAM32Q8TC27 787 aa9.81□□□□□ -0.84
CD44-231ENST00000531110 TOR4AQ9NXH8 423 aa9.8□□□□□ -0.84
CD44-231ENST00000531110 MAGEB6P1A0A0J9YX57 407 aa9.79□□□□□ -0.84
CD44-231ENST00000531110 CLUAP1Q96AJ1 413 aa9.79□□□□□ -0.84
CD44-231ENST00000531110 SLC10A4Q96EP9 437 aa9.79□□□□□ -0.84
CD44-231ENST00000531110 EIF4G2P78344 907 aaKnown RBP eCLIP9.78□□□□□ -0.84
CD44-231ENST00000531110 FOXC1Q12948 553 aa9.78□□□□□ -0.84
CD44-231ENST00000531110 CCDC125Q86Z20 511 aa9.78□□□□□ -0.84
CD44-231ENST00000531110 ZMYND15Q9H091 742 aa9.78□□□□□ -0.84
CD44-231ENST00000531110 PDZRN3Q9UPQ7 1066 aa9.78□□□□□ -0.84
CD44-231ENST00000531110 NRG2O14511 850 aaPredicted RBP9.77□□□□□ -0.85
CD44-231ENST00000531110 NBPF20Q3BBV1 942 aa9.77□□□□□ -0.85
CD44-231ENST00000531110 CYP4X1Q8N118 509 aa9.77□□□□□ -0.85
CD44-231ENST00000531110 CARD14Q9BXL6 1004 aa9.77□□□□□ -0.85
CD44-231ENST00000531110 ADH1CP00326 375 aa9.75□□□□□ -0.85
CD44-231ENST00000531110 C14orf37Q86TY3 774 aa9.75□□□□□ -0.85
CD44-231ENST00000531110 SEPT12Q8IYM1 358 aa9.75□□□□□ -0.85
CD44-231ENST00000531110 TNFRSF10AO00220 468 aa9.74□□□□□ -0.85
CD44-231ENST00000531110 NR5A1Q13285 461 aa9.74□□□□□ -0.85
CD44-231ENST00000531110 DZIP3Q86Y13 1208 aaKnown RBP9.74□□□□□ -0.85
CD44-231ENST00000531110 TTC24A2A3L6 582 aaPredicted RBP9.73□□□□□ -0.85
CD44-231ENST00000531110 TRAK2O60296 914 aa9.73□□□□□ -0.85
CD44-231ENST00000531110 VAC14Q08AM6 782 aa9.73□□□□□ -0.85
CD44-231ENST00000531110 ESPNB1AK53 854 aa9.72□□□□□ -0.85
CD44-231ENST00000531110 VASH1Q7L8A9 365 aaPredicted RBP9.72□□□□□ -0.85
CD44-231ENST00000531110 TRIM52Q96A61 297 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms