RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-208ENST00000528865 ARHGEF40Q8TER5 1519 aa10.69□□□□□ -0.7
CSTF3-208ENST00000528865 YEATS2Q9ULM3 1422 aa10.69□□□□□ -0.7
CSTF3-208ENST00000528865 BRPF1P55201 1214 aaPredicted RBP10.69□□□□□ -0.7
CSTF3-208ENST00000528865 SRPK2P78362 688 aaKnown RBP10.69□□□□□ -0.7
CSTF3-208ENST00000528865 GGNBP2Q9H3C7 697 aa10.69□□□□□ -0.7
CSTF3-208ENST00000528865 DLC1Q96QB1 1528 aa10.68□□□□□ -0.7
CSTF3-208ENST00000528865 ANKRD26Q9UPS8 1709 aa10.68□□□□□ -0.7
CSTF3-208ENST00000528865 DIAPH1O60610 1272 aaKnown RBP10.68□□□□□ -0.7
CSTF3-208ENST00000528865 FCHSD2O94868 740 aa10.68□□□□□ -0.7
CSTF3-208ENST00000528865 EXOSC9Q06265 439 aaKnown RBP10.68□□□□□ -0.7
CSTF3-208ENST00000528865 BECN1Q14457 450 aa10.68□□□□□ -0.7
CSTF3-208ENST00000528865 ALDH1L2Q3SY69 923 aa10.68□□□□□ -0.7
CSTF3-208ENST00000528865 HDGFL2Q7Z4V5 671 aaPredicted RBP10.68□□□□□ -0.7
CSTF3-208ENST00000528865 PRAM1Q96QH2 718 aa10.68□□□□□ -0.7
CSTF3-208ENST00000528865 CDK19Q9BWU1 502 aa10.68□□□□□ -0.7
CSTF3-208ENST00000528865 SENP3Q9H4L4 574 aaPredicted RBP10.68□□□□□ -0.7
CSTF3-208ENST00000528865 PREX1Q8TCU6 1659 aa10.68□□□□□ -0.7
CSTF3-208ENST00000528865 ALKQ9UM73 1620 aa10.67□□□□□ -0.7
CSTF3-208ENST00000528865 ATF7IPQ6VMQ6 1270 aa10.67□□□□□ -0.7
CSTF3-208ENST00000528865 SSH1Q8WYL5 1049 aa10.67□□□□□ -0.7
CSTF3-208ENST00000528865 ZNF428Q96B54 188 aa10.67□□□□□ -0.7
CSTF3-208ENST00000528865 TBC1D32Q96NH3 1257 aa10.67□□□□□ -0.7
CSTF3-208ENST00000528865 POGKQ9P215 609 aa10.67□□□□□ -0.7
CSTF3-208ENST00000528865 STK26Q9P289 416 aa10.67□□□□□ -0.7
CSTF3-208ENST00000528865 DDX19BQ9UMR2 479 aa10.67□□□□□ -0.7
CSTF3-208ENST00000528865 CDC42BPGQ6DT37 1551 aa10.67□□□□□ -0.7
CSTF3-208ENST00000528865 MINK1Q8N4C8 1332 aaPredicted RBP10.66□□□□□ -0.7
CSTF3-208ENST00000528865 U2SURPO15042 1029 aaKnown RBP10.66□□□□□ -0.7
CSTF3-208ENST00000528865 RIPK4P57078 832 aa10.66□□□□□ -0.7
CSTF3-208ENST00000528865 SMC5Q8IY18 1101 aa10.66□□□□□ -0.7
CSTF3-208ENST00000528865 BCL2L13Q9BXK5 485 aa10.66□□□□□ -0.7
CSTF3-208ENST00000528865 PPIP5K1Q6PFW1 1433 aa10.66□□□□□ -0.7
CSTF3-208ENST00000528865 REREQ9P2R6 1566 aa10.65□□□□□ -0.7
CSTF3-208ENST00000528865 AGLP35573 1532 aa10.65□□□□□ -0.7
CSTF3-208ENST00000528865 IPO8O15397 1037 aaKnown RBP10.65□□□□□ -0.7
CSTF3-208ENST00000528865 TRIM27P14373 513 aa10.65□□□□□ -0.7
CSTF3-208ENST00000528865 SAFB2Q14151 953 aaKnown RBP eCLIP10.65□□□□□ -0.7
CSTF3-208ENST00000528865 TSR2Q969E8 191 aaKnown RBP10.65□□□□□ -0.7
CSTF3-208ENST00000528865 SIRT1Q96EB6 747 aa10.65□□□□□ -0.7
CSTF3-208ENST00000528865 SMC4Q9NTJ3 1288 aa10.65□□□□□ -0.7
CSTF3-208ENST00000528865 NOB1Q9ULX3 412 aaKnown RBP10.65□□□□□ -0.7
CSTF3-208ENST00000528865 ATP7BP35670 1465 aa10.64□□□□□ -0.71
CSTF3-208ENST00000528865 FRAT2O75474 233 aaPredicted RBP10.64□□□□□ -0.71
CSTF3-208ENST00000528865 FBXO31Q5XUX0 539 aaPredicted RBP10.64□□□□□ -0.71
CSTF3-208ENST00000528865 FTSJ3Q8IY81 847 aaKnown RBP10.64□□□□□ -0.71
CSTF3-208ENST00000528865 ANTXR1Q9H6X2 564 aa10.64□□□□□ -0.71
CSTF3-208ENST00000528865 UPF2Q9HAU5 1272 aaKnown RBP10.64□□□□□ -0.71
CSTF3-208ENST00000528865 ZBTB40Q9NUA8 1239 aa10.64□□□□□ -0.71
CSTF3-208ENST00000528865 CABP1Q9NZU7 370 aa10.64□□□□□ -0.71
CSTF3-208ENST00000528865 MYO5BQ9ULV0 1848 aa10.63□□□□□ -0.71
CSTF3-208ENST00000528865 ARHGAP45Q92619 1136 aa10.63□□□□□ -0.71
CSTF3-208ENST00000528865 RSPH6AQ9H0K4 717 aa10.63□□□□□ -0.71
CSTF3-208ENST00000528865 POLKQ9UBT6 870 aa10.63□□□□□ -0.71
CSTF3-208ENST00000528865 KIF16BQ96L93 1317 aa10.62□□□□□ -0.71
CSTF3-208ENST00000528865 FAM135BQ49AJ0 1406 aa10.62□□□□□ -0.71
CSTF3-208ENST00000528865 TMEM57Q8N5G2 664 aa10.62□□□□□ -0.71
CSTF3-208ENST00000528865 AATKQ6ZMQ8 1374 aa10.62□□□□□ -0.71
CSTF3-208ENST00000528865 A2ML1A8K2U0 1454 aa10.61□□□□□ -0.71
CSTF3-208ENST00000528865 CPSF1Q10570 1443 aaKnown RBP10.61□□□□□ -0.71
CSTF3-208ENST00000528865 ZNF853P0CG23 659 aa10.61□□□□□ -0.71
CSTF3-208ENST00000528865 NFE2L2Q16236 605 aa10.61□□□□□ -0.71
CSTF3-208ENST00000528865 TBC1D2Q9BYX2 928 aa10.61□□□□□ -0.71
CSTF3-208ENST00000528865 CHMP4BQ9H444 224 aaKnown RBP10.61□□□□□ -0.71
CSTF3-208ENST00000528865 PIK3R4Q99570 1358 aa10.61□□□□□ -0.71
CSTF3-208ENST00000528865 SPATA31D1Q6ZQQ2 1576 aa10.6□□□□□ -0.71
CSTF3-208ENST00000528865 VAMP4O75379 141 aa10.6□□□□□ -0.71
CSTF3-208ENST00000528865 IL13P35225 146 aa10.6□□□□□ -0.71
CSTF3-208ENST00000528865 CALD1Q05682 793 aaKnown RBP10.6□□□□□ -0.71
CSTF3-208ENST00000528865 MRPL50Q8N5N7 158 aaKnown RBP10.6□□□□□ -0.71
CSTF3-208ENST00000528865 KIF20BQ96Q89 1820 aa10.6□□□□□ -0.71
CSTF3-208ENST00000528865 RIMS2Q9UQ26 1411 aa10.59□□□□□ -0.71
CSTF3-208ENST00000528865 PRKAR2BP31323 418 aa10.59□□□□□ -0.71
CSTF3-208ENST00000528865 NUCB1Q02818 461 aa10.59□□□□□ -0.71
CSTF3-208ENST00000528865 ITPRIPQ8IWB1 547 aa10.59□□□□□ -0.71
CSTF3-208ENST00000528865 IFT57Q9NWB7 429 aa10.59□□□□□ -0.71
CSTF3-208ENST00000528865 WASLO00401 505 aaPredicted RBP10.58□□□□□ -0.72
CSTF3-208ENST00000528865 ZBTB7BO15156 539 aaPredicted RBP10.58□□□□□ -0.72
CSTF3-208ENST00000528865 GNAI1P63096 354 aa10.58□□□□□ -0.72
CSTF3-208ENST00000528865 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.58□□□□□ -0.72
CSTF3-208ENST00000528865 C22orf23Q9BZE7 217 aa10.58□□□□□ -0.72
CSTF3-208ENST00000528865 SETD1AO15047 1707 aaKnown RBP10.58□□□□□ -0.72
CSTF3-208ENST00000528865 EDC4Q6P2E9 1401 aaKnown RBP10.58□□□□□ -0.72
CSTF3-208ENST00000528865 KIF24Q5T7B8 1368 aa10.57□□□□□ -0.72
CSTF3-208ENST00000528865 WAPLQ7Z5K2 1190 aa10.57□□□□□ -0.72
CSTF3-208ENST00000528865 IL27Q8NEV9 243 aa10.57□□□□□ -0.72
CSTF3-208ENST00000528865 PHACTR3Q96KR7 559 aa10.57□□□□□ -0.72
CSTF3-208ENST00000528865 STAG3Q9UJ98 1225 aa10.57□□□□□ -0.72
CSTF3-208ENST00000528865 LRRC7Q96NW7 1537 aa10.57□□□□□ -0.72
CSTF3-208ENST00000528865 PTCH1Q13635 1447 aa10.57□□□□□ -0.72
CSTF3-208ENST00000528865 RBM25P49756 843 aaKnown RBP10.56□□□□□ -0.72
CSTF3-208ENST00000528865 SNX21Q969T3 373 aa10.56□□□□□ -0.72
CSTF3-208ENST00000528865 GCC1Q96CN9 775 aa10.56□□□□□ -0.72
CSTF3-208ENST00000528865 TECPR2O15040 1411 aa10.56□□□□□ -0.72
CSTF3-208ENST00000528865 CDK12Q9NYV4 1490 aaPredicted RBP10.55□□□□□ -0.72
CSTF3-208ENST00000528865 LMOD3Q0VAK6 560 aa10.55□□□□□ -0.72
CSTF3-208ENST00000528865 CHD1LQ86WJ1 897 aa10.55□□□□□ -0.72
CSTF3-208ENST00000528865 RIMBP3CA6NJZ7 1639 aa10.55□□□□□ -0.72
CSTF3-208ENST00000528865 RIMBP3BA6NNM3 1639 aa10.55□□□□□ -0.72
CSTF3-208ENST00000528865 RIMBP3Q9UFD9 1639 aa10.55□□□□□ -0.72
CSTF3-208ENST00000528865 HDGFP51858 240 aaKnown RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms