RNA–Protein interactions for RNA: ENST00000527680.1

TRAPPC4-208, Transcript of trafficking protein particle complex 4, human

TSL 2

Gene TRAPPC4, Length 569 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC4-208	ENST00000527680	ALS2	Q96Q42	1657 aa		32.34	■■■□□ 2.77
TRAPPC4-208	ENST00000527680	KRT27	Q7Z3Y8	459 aa		32.33	■■■□□ 2.77
TRAPPC4-208	ENST00000527680	CCDC61	Q9Y6R9	512 aa		32.33	■■■□□ 2.77
TRAPPC4-208	ENST00000527680	BRWD3	Q6RI45	1802 aa		32.33	■■■□□ 2.77
TRAPPC4-208	ENST00000527680	PRDM11	Q9NQV5	511 aa		32.32	■■■□□ 2.76
TRAPPC4-208	ENST00000527680	EP400	Q96L91	3159 aa		32.32	■■■□□ 2.76
TRAPPC4-208	ENST00000527680	FAM98C	Q17RN3	349 aa	Known RBP	32.31	■■■□□ 2.76
TRAPPC4-208	ENST00000527680	ITSN1	Q15811	1721 aa		32.31	■■■□□ 2.76
TRAPPC4-208	ENST00000527680	ATP7B	P35670	1465 aa		32.3	■■■□□ 2.76
TRAPPC4-208	ENST00000527680	NUTM2G	Q5VZR2	741 aa		32.3	■■■□□ 2.76
TRAPPC4-208	ENST00000527680	ACE	P12821	1306 aa		32.29	■■■□□ 2.76
TRAPPC4-208	ENST00000527680	NBPF8	Q3BBV2	869 aa		32.29	■■■□□ 2.76
TRAPPC4-208	ENST00000527680	KIAA1210	Q9ULL0	1709 aa		32.29	■■■□□ 2.76
TRAPPC4-208	ENST00000527680	BLM	P54132	1417 aa	Predicted RBP	32.28	■■■□□ 2.76
TRAPPC4-208	ENST00000527680	SRPK2	P78362	688 aa	Known RBP	32.28	■■■□□ 2.76
TRAPPC4-208	ENST00000527680	COL14A1	Q05707	1796 aa	Known RBP	32.26	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	PLEKHG3	A1L390	1219 aa		32.24	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	DEFB132	Q7Z7B7	95 aa		32.24	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.24	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	ZC3H6	P61129	1189 aa	Known RBP	32.23	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	CHRNA2	Q15822	529 aa		32.23	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	ABTB2	Q8N961	1025 aa		32.22	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	L3MBTL2	Q969R5	705 aa		32.22	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	SPATA31A5	Q5VU36	1347 aa		32.21	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	SPATA31A7	Q8IWB4	1347 aa		32.21	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	POLR3A	O14802	1390 aa	Predicted RBP	32.2	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	KIAA0232	Q92628	1395 aa		32.2	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	NEUROD1	Q13562	356 aa		32.2	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	CABP2	Q9NPB3	220 aa		32.2	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	STRN4	Q9NRL3	753 aa		32.2	■■■□□ 2.75
TRAPPC4-208	ENST00000527680	NRAP	Q86VF7	1730 aa		32.2	■■■□□ 2.74
TRAPPC4-208	ENST00000527680	SIN3A	Q96ST3	1273 aa		32.19	■■■□□ 2.74
TRAPPC4-208	ENST00000527680	EVA1C	P58658	441 aa		32.17	■■■□□ 2.74
TRAPPC4-208	ENST00000527680	CRYBG1	Q9Y4K1	1723 aa		32.14	■■■□□ 2.74
TRAPPC4-208	ENST00000527680	FAM182B	Q5T319	152 aa		32.13	■■■□□ 2.73
TRAPPC4-208	ENST00000527680	PPIP5K1	Q6PFW1	1433 aa		32.13	■■■□□ 2.73
TRAPPC4-208	ENST00000527680	NLRP13	Q86W25	1043 aa		32.12	■■■□□ 2.73
TRAPPC4-208	ENST00000527680	TOPAZ1	Q8N9V7	1692 aa		32.11	■■■□□ 2.73
TRAPPC4-208	ENST00000527680	BAG6	P46379	1132 aa		32.11	■■■□□ 2.73
TRAPPC4-208	ENST00000527680	USP35	Q9P2H5	1018 aa		32.11	■■■□□ 2.73
TRAPPC4-208	ENST00000527680	SPATA31A1	Q5TZJ5	1347 aa		32.1	■■■□□ 2.73
TRAPPC4-208	ENST00000527680	CABP1	Q9NZU7	370 aa		32.1	■■■□□ 2.73
TRAPPC4-208	ENST00000527680	PHRF1	Q9P1Y6	1649 aa	Known RBP	32.08	■■■□□ 2.73
TRAPPC4-208	ENST00000527680	EVC2	Q86UK5	1308 aa		32.05	■■■□□ 2.72
TRAPPC4-208	ENST00000527680	GC	P02774	474 aa		32.05	■■■□□ 2.72
TRAPPC4-208	ENST00000527680	QRICH2	Q9H0J4	1663 aa		32.05	■■■□□ 2.72
TRAPPC4-208	ENST00000527680	ZBTB7C	A1YPR0	619 aa		32.03	■■■□□ 2.72
TRAPPC4-208	ENST00000527680	NLRP6	P59044	892 aa		32.02	■■■□□ 2.72
TRAPPC4-208	ENST00000527680	ROCK2	O75116	1388 aa	Known RBP	32.02	■■■□□ 2.72
TRAPPC4-208	ENST00000527680	EN1	Q05925	392 aa	Predicted RBP	32.01	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	SRCAP	Q6ZRS2	3230 aa		32.01	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	USP19	O94966	1318 aa		32	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	LARP1	Q6PKG0	1096 aa	Known RBP	32	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	BRD4	O60885	1362 aa	Predicted RBP	31.99	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	PDE3B	Q13370	1112 aa		31.99	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	CPD	O75976	1380 aa		31.98	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	FAM196A	Q6ZSG2	479 aa		31.98	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	SSH2	Q76I76	1423 aa		31.98	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	THSD7A	Q9UPZ6	1657 aa		31.96	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	BARGIN	Q6ZT62	677 aa		31.96	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	TCP11L2	Q8N4U5	519 aa		31.96	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	CAMTA1	Q9Y6Y1	1673 aa		31.95	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	NRK	Q7Z2Y5	1582 aa		31.95	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	TRPM1	Q7Z4N2	1603 aa		31.95	■■■□□ 2.71
TRAPPC4-208	ENST00000527680	USP6	P35125	1406 aa		31.94	■■■□□ 2.7
TRAPPC4-208	ENST00000527680	PSD	A5PKW4	1024 aa	Predicted RBP	31.94	■■■□□ 2.7
TRAPPC4-208	ENST00000527680	TRIM37	O94972	964 aa		31.94	■■■□□ 2.7
TRAPPC4-208	ENST00000527680	ZNF692	Q9BU19	519 aa	Predicted RBP	31.93	■■■□□ 2.7
TRAPPC4-208	ENST00000527680	RGPD1	P0DJD0	1748 aa		31.92	■■■□□ 2.7
TRAPPC4-208	ENST00000527680	THRAP3	Q9Y2W1	955 aa	Known RBP	31.9	■■■□□ 2.7
TRAPPC4-208	ENST00000527680	APBA3	O96018	575 aa		31.87	■■■□□ 2.69
TRAPPC4-208	ENST00000527680	EZH2	Q15910	746 aa	Known RBP	31.87	■■■□□ 2.69
TRAPPC4-208	ENST00000527680	LMO7	Q8WWI1	1683 aa		31.85	■■■□□ 2.69
TRAPPC4-208	ENST00000527680	TTC21B	Q7Z4L5	1316 aa		31.84	■■■□□ 2.69
TRAPPC4-208	ENST00000527680	SOX12	O15370	315 aa		31.84	■■■□□ 2.69
TRAPPC4-208	ENST00000527680	CARD11	Q9BXL7	1154 aa		31.84	■■■□□ 2.69
TRAPPC4-208	ENST00000527680	TOM1L2	Q6ZVM7	507 aa		31.83	■■■□□ 2.69
TRAPPC4-208	ENST00000527680	COL5A2	P05997	1499 aa	Predicted RBP	31.83	■■■□□ 2.69
TRAPPC4-208	ENST00000527680	AATK	Q6ZMQ8	1374 aa		31.82	■■■□□ 2.69
TRAPPC4-208	ENST00000527680	R3HDM1	Q15032	1099 aa	Known RBP	31.81	■■■□□ 2.68
TRAPPC4-208	ENST00000527680	KCNH5	Q8NCM2	988 aa		31.81	■■■□□ 2.68
TRAPPC4-208	ENST00000527680	CAMKK2	Q96RR4	588 aa		31.8	■■■□□ 2.68
TRAPPC4-208	ENST00000527680	CRB1	P82279	1406 aa		31.8	■■■□□ 2.68
TRAPPC4-208	ENST00000527680	DISP2	A7MBM2	1401 aa		31.79	■■■□□ 2.68
TRAPPC4-208	ENST00000527680	KTN1	Q86UP2	1357 aa	Known RBP	31.79	■■■□□ 2.68
TRAPPC4-208	ENST00000527680	TTC21A	Q8NDW8	1320 aa		31.78	■■■□□ 2.68
TRAPPC4-208	ENST00000527680	TNS1	Q9HBL0	1735 aa	Known RBP	31.78	■■■□□ 2.68
TRAPPC4-208	ENST00000527680	SLIT3	O75094	1523 aa		31.77	■■■□□ 2.68
TRAPPC4-208	ENST00000527680	AXIN2	Q9Y2T1	843 aa		31.77	■■■□□ 2.68
TRAPPC4-208	ENST00000527680	TONSL	Q96HA7	1378 aa		31.77	■■■□□ 2.68
TRAPPC4-208	ENST00000527680	TMC1	Q8TDI8	760 aa		31.76	■■■□□ 2.67
TRAPPC4-208	ENST00000527680	PIK3C2A	O00443	1686 aa		31.76	■■■□□ 2.67
TRAPPC4-208	ENST00000527680	CSB-PGBD3	P0DP91	1061 aa		31.75	■■■□□ 2.67
TRAPPC4-208	ENST00000527680	ARHGEF25	Q86VW2	580 aa		31.75	■■■□□ 2.67
TRAPPC4-208	ENST00000527680	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	31.74	■■■□□ 2.67
TRAPPC4-208	ENST00000527680	DDB1	Q16531	1140 aa		31.73	■■■□□ 2.67
TRAPPC4-208	ENST00000527680	AKAP12	Q02952	1782 aa		31.72	■■■□□ 2.67
TRAPPC4-208	ENST00000527680	C11orf95	C9JLR9	678 aa	Predicted RBP	31.72	■■■□□ 2.67
TRAPPC4-208	ENST00000527680	WDR17	Q8IZU2	1322 aa		31.72	■■■□□ 2.67
TRAPPC4-208	ENST00000527680	CPSF1	Q10570	1443 aa	Known RBP	31.71	■■■□□ 2.67

Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms