RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 RALGAPBQ86X10 1494 aa15□□□□□ -0.01
PRPF40B-204ENST00000527253 ITSN1Q15811 1721 aa15□□□□□ -0.01
PRPF40B-204ENST00000527253 TNKS1BP1Q9C0C2 1729 aaKnown RBP15□□□□□ -0.01
PRPF40B-204ENST00000527253 GLI3P10071 1580 aa14.99□□□□□ -0.01
PRPF40B-204ENST00000527253 SRPK2P78362 688 aaKnown RBP14.99□□□□□ -0.01
PRPF40B-204ENST00000527253 QRICH2Q9H0J4 1663 aa14.98□□□□□ -0.01
PRPF40B-204ENST00000527253 VPS72Q15906 364 aa14.98□□□□□ -0.01
PRPF40B-204ENST00000527253 NUTM2GQ5VZR2 741 aa14.98□□□□□ -0.01
PRPF40B-204ENST00000527253 ROCK2O75116 1388 aaKnown RBP14.98□□□□□ -0.01
PRPF40B-204ENST00000527253 CRYBG1Q9Y4K1 1723 aa14.97□□□□□ -0.01
PRPF40B-204ENST00000527253 PLCH1Q4KWH8 1693 aa14.97□□□□□ -0.01
PRPF40B-204ENST00000527253 PPIP5K1Q6PFW1 1433 aa14.96□□□□□ -0.01
PRPF40B-204ENST00000527253 CABP1Q9NZU7 370 aa14.96□□□□□ -0.01
PRPF40B-204ENST00000527253 NWD2Q9ULI1 1742 aa14.95□□□□□ -0.02
PRPF40B-204ENST00000527253 BTG4Q9NY30 223 aa14.95□□□□□ -0.02
PRPF40B-204ENST00000527253 ATAD2Q6PL18 1390 aa14.95□□□□□ -0.02
PRPF40B-204ENST00000527253 ONECUT3O60422 494 aaPredicted RBP14.94□□□□□ -0.02
PRPF40B-204ENST00000527253 NRAPQ86VF7 1730 aa14.93□□□□□ -0.02
PRPF40B-204ENST00000527253 SEPT12Q8IYM1 358 aa14.93□□□□□ -0.02
PRPF40B-204ENST00000527253 EVC2Q86UK5 1308 aa14.92□□□□□ -0.02
PRPF40B-204ENST00000527253 ZC3H6P61129 1189 aaKnown RBP14.92□□□□□ -0.02
PRPF40B-204ENST00000527253 CHRNA2Q15822 529 aa14.92□□□□□ -0.02
PRPF40B-204ENST00000527253 ABTB2Q8N961 1025 aa14.92□□□□□ -0.02
PRPF40B-204ENST00000527253 CCDC9Q9Y3X0 531 aaKnown RBP14.92□□□□□ -0.02
PRPF40B-204ENST00000527253 KIAA0232Q92628 1395 aa14.92□□□□□ -0.02
PRPF40B-204ENST00000527253 TONSLQ96HA7 1378 aa14.92□□□□□ -0.02
PRPF40B-204ENST00000527253 COL14A1Q05707 1796 aaKnown RBP14.92□□□□□ -0.02
PRPF40B-204ENST00000527253 PRDM11Q9NQV5 511 aa14.91□□□□□ -0.02
PRPF40B-204ENST00000527253 USP19O94966 1318 aa14.91□□□□□ -0.02
PRPF40B-204ENST00000527253 BRWD3Q6RI45 1802 aa14.9□□□□□ -0.02
PRPF40B-204ENST00000527253 CARD11Q9BXL7 1154 aa14.9□□□□□ -0.02
PRPF40B-204ENST00000527253 PHRF1Q9P1Y6 1649 aaKnown RBP14.9□□□□□ -0.02
PRPF40B-204ENST00000527253 SSH2Q76I76 1423 aa14.9□□□□□ -0.02
PRPF40B-204ENST00000527253 USP6P35125 1406 aa14.89□□□□□ -0.03
PRPF40B-204ENST00000527253 SPATA31A5Q5VU36 1347 aa14.89□□□□□ -0.03
PRPF40B-204ENST00000527253 SPATA31A7Q8IWB4 1347 aa14.89□□□□□ -0.03
PRPF40B-204ENST00000527253 FAM98CQ17RN3 349 aaKnown RBP14.88□□□□□ -0.03
PRPF40B-204ENST00000527253 NRKQ7Z2Y5 1582 aa14.87□□□□□ -0.03
PRPF40B-204ENST00000527253 NLRP13Q86W25 1043 aa14.87□□□□□ -0.03
PRPF40B-204ENST00000527253 BRD4O60885 1362 aaPredicted RBP14.86□□□□□ -0.03
PRPF40B-204ENST00000527253 GCP02774 474 aa14.86□□□□□ -0.03
PRPF40B-204ENST00000527253 SBNO2Q9Y2G9 1366 aa14.85□□□□□ -0.03
PRPF40B-204ENST00000527253 CAMTA1Q9Y6Y1 1673 aa14.85□□□□□ -0.03
PRPF40B-204ENST00000527253 KRT27Q7Z3Y8 459 aa14.85□□□□□ -0.03
PRPF40B-204ENST00000527253 STRN4Q9NRL3 753 aa14.85□□□□□ -0.03
PRPF40B-204ENST00000527253 CPDO75976 1380 aa14.85□□□□□ -0.03
PRPF40B-204ENST00000527253 NLRP6P59044 892 aa14.84□□□□□ -0.03
PRPF40B-204ENST00000527253 CCDC125Q86Z20 511 aa14.84□□□□□ -0.03
PRPF40B-204ENST00000527253 SPATA31A1Q5TZJ5 1347 aa14.84□□□□□ -0.03
PRPF40B-204ENST00000527253 TTC21BQ7Z4L5 1316 aa14.84□□□□□ -0.03
PRPF40B-204ENST00000527253 CPSF1Q10570 1443 aaKnown RBP14.83□□□□□ -0.03
PRPF40B-204ENST00000527253 EP400Q96L91 3159 aa14.83□□□□□ -0.03
PRPF40B-204ENST00000527253 ZNF692Q9BU19 519 aaPredicted RBP14.83□□□□□ -0.04
PRPF40B-204ENST00000527253 PIK3C2AO00443 1686 aa14.82□□□□□ -0.04
PRPF40B-204ENST00000527253 LMO7Q8WWI1 1683 aa14.82□□□□□ -0.04
PRPF40B-204ENST00000527253 LARP1Q6PKG0 1096 aaKnown RBP14.82□□□□□ -0.04
PRPF40B-204ENST00000527253 TESK2Q96S53 571 aa14.82□□□□□ -0.04
PRPF40B-204ENST00000527253 AKAP12Q02952 1782 aa14.82□□□□□ -0.04
PRPF40B-204ENST00000527253 SLIT3O75094 1523 aa14.82□□□□□ -0.04
PRPF40B-204ENST00000527253 A0A0G2JS52 829 aa14.81□□□□□ -0.04
PRPF40B-204ENST00000527253 MYT1Q01538 1121 aa14.81□□□□□ -0.04
PRPF40B-204ENST00000527253 FAM182BQ5T319 152 aa14.81□□□□□ -0.04
PRPF40B-204ENST00000527253 BLMP54132 1417 aaPredicted RBP14.81□□□□□ -0.04
PRPF40B-204ENST00000527253 CD163L1Q9NR16 1453 aa14.81□□□□□ -0.04
PRPF40B-204ENST00000527253 THSD7AQ9UPZ6 1657 aa14.81□□□□□ -0.04
PRPF40B-204ENST00000527253 ST20-MTHFSA0A0A6YYL1 179 aa14.8□□□□□ -0.04
PRPF40B-204ENST00000527253 EVA1CP58658 441 aa14.8□□□□□ -0.04
PRPF40B-204ENST00000527253 DEFB132Q7Z7B7 95 aa14.8□□□□□ -0.04
PRPF40B-204ENST00000527253 SLC12A5Q9H2X9 1139 aa14.8□□□□□ -0.04
PRPF40B-204ENST00000527253 ZRANB1Q9UGI0 708 aa14.8□□□□□ -0.04
PRPF40B-204ENST00000527253 ZBTB7CA1YPR0 619 aa14.79□□□□□ -0.04
PRPF40B-204ENST00000527253 KTN1Q86UP2 1357 aaKnown RBP14.79□□□□□ -0.04
PRPF40B-204ENST00000527253 USP35Q9P2H5 1018 aa14.79□□□□□ -0.04
PRPF40B-204ENST00000527253 TMC1Q8TDI8 760 aa14.78□□□□□ -0.04
PRPF40B-204ENST00000527253 AXIN2Q9Y2T1 843 aa14.78□□□□□ -0.04
PRPF40B-204ENST00000527253 COL5A2P05997 1499 aaPredicted RBP14.77□□□□□ -0.04
PRPF40B-204ENST00000527253 AATKQ6ZMQ8 1374 aa14.77□□□□□ -0.04
PRPF40B-204ENST00000527253 TTC21AQ8NDW8 1320 aa14.77□□□□□ -0.04
PRPF40B-204ENST00000527253 BARGINQ6ZT62 677 aa14.77□□□□□ -0.05
PRPF40B-204ENST00000527253 PCGF6Q9BYE7 350 aa14.77□□□□□ -0.05
PRPF40B-204ENST00000527253 COL18A1P39060 1754 aa14.77□□□□□ -0.05
PRPF40B-204ENST00000527253 MON2Q7Z3U7 1717 aa14.76□□□□□ -0.05
PRPF40B-204ENST00000527253 SOX12O15370 315 aa14.76□□□□□ -0.05
PRPF40B-204ENST00000527253 ARHGEF25Q86VW2 580 aa14.76□□□□□ -0.05
PRPF40B-204ENST00000527253 NME9Q86XW9 330 aa14.76□□□□□ -0.05
PRPF40B-204ENST00000527253 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.76□□□□□ -0.05
PRPF40B-204ENST00000527253 TCP11L2Q8N4U5 519 aa14.76□□□□□ -0.05
PRPF40B-204ENST00000527253 PUS7Q96PZ0 661 aaKnown RBP14.76□□□□□ -0.05
PRPF40B-204ENST00000527253 USP31Q70CQ4 1352 aa14.74□□□□□ -0.05
PRPF40B-204ENST00000527253 A0A1W2PP64 1363 aa14.73□□□□□ -0.05
PRPF40B-204ENST00000527253 NFAT5O94916 1531 aa14.73□□□□□ -0.05
PRPF40B-204ENST00000527253 KCNH5Q8NCM2 988 aa14.73□□□□□ -0.05
PRPF40B-204ENST00000527253 SF3B2Q13435 895 aaKnown RBP14.72□□□□□ -0.05
PRPF40B-204ENST00000527253 HDGFL2Q7Z4V5 671 aaPredicted RBP14.72□□□□□ -0.05
PRPF40B-204ENST00000527253 THRAP3Q9Y2W1 955 aaKnown RBP14.72□□□□□ -0.05
PRPF40B-204ENST00000527253 CRB1P82279 1406 aa14.72□□□□□ -0.05
PRPF40B-204ENST00000527253 USP47Q96K76 1375 aa14.72□□□□□ -0.05
PRPF40B-204ENST00000527253 EDC4Q6P2E9 1401 aaKnown RBP14.7□□□□□ -0.06
PRPF40B-204ENST00000527253 TERF2IPQ9NYB0 399 aa14.7□□□□□ -0.06
PRPF40B-204ENST00000527253 TIMELESSQ9UNS1 1208 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms