RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	PRR20C	P86479	221 aa		10.22	□□□□□ -0.77
CD44-223	ENST00000526553	PRR20D	P86480	221 aa		10.22	□□□□□ -0.77
CD44-223	ENST00000526553	PRR20B	P86481	221 aa		10.22	□□□□□ -0.77
CD44-223	ENST00000526553	PRR20A	P86496	221 aa		10.22	□□□□□ -0.77
CD44-223	ENST00000526553	MTMR14	Q8NCE2	650 aa		10.22	□□□□□ -0.77
CD44-223	ENST00000526553	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.22	□□□□□ -0.77
CD44-223	ENST00000526553	TRIM34	Q9BYJ4	488 aa		10.22	□□□□□ -0.77
CD44-223	ENST00000526553	FKBPL	Q9UIM3	349 aa		10.22	□□□□□ -0.77
CD44-223	ENST00000526553	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.22	□□□□□ -0.77
CD44-223	ENST00000526553	WNT7A	O00755	349 aa		10.21	□□□□□ -0.77
CD44-223	ENST00000526553	GDF9	O60383	454 aa		10.21	□□□□□ -0.77
CD44-223	ENST00000526553	LINC01559	Q495D7	138 aa		10.21	□□□□□ -0.77
CD44-223	ENST00000526553	TRIM67	Q6ZTA4	783 aa		10.21	□□□□□ -0.77
CD44-223	ENST00000526553	PNMA1	Q8ND90	353 aa		10.21	□□□□□ -0.77
CD44-223	ENST00000526553	GJD4	Q96KN9	370 aa	Predicted RBP	10.21	□□□□□ -0.77
CD44-223	ENST00000526553	SNRK	Q9NRH2	765 aa		10.21	□□□□□ -0.77
CD44-223	ENST00000526553	PKD2L1	Q9P0L9	805 aa		10.21	□□□□□ -0.77
CD44-223	ENST00000526553	EPS8L1	Q8TE68	723 aa		10.2	□□□□□ -0.78
CD44-223	ENST00000526553	FOXC1	Q12948	553 aa		10.18	□□□□□ -0.78
CD44-223	ENST00000526553	RC3H1	Q5TC82	1133 aa	Known RBP	10.18	□□□□□ -0.78
CD44-223	ENST00000526553	MCM6	Q14566	821 aa		10.17	□□□□□ -0.78
CD44-223	ENST00000526553	IRX2	Q9BZI1	471 aa	Predicted RBP	10.17	□□□□□ -0.78
CD44-223	ENST00000526553	PDZRN3	Q9UPQ7	1066 aa		10.17	□□□□□ -0.78
CD44-223	ENST00000526553	LAPTM4A	Q15012	233 aa		10.16	□□□□□ -0.78
CD44-223	ENST00000526553	PDXDC2P	Q6P474	469 aa		10.16	□□□□□ -0.78
CD44-223	ENST00000526553	SH3BP5L	Q7L8J4	393 aa		10.16	□□□□□ -0.78
CD44-223	ENST00000526553	EHBP1	Q8NDI1	1231 aa		10.16	□□□□□ -0.78
CD44-223	ENST00000526553	NDUFB9	Q9Y6M9	179 aa		10.16	□□□□□ -0.78
CD44-223	ENST00000526553	TNFRSF10A	O00220	468 aa		10.15	□□□□□ -0.78
CD44-223	ENST00000526553	NRG2	O14511	850 aa	Predicted RBP	10.15	□□□□□ -0.78
CD44-223	ENST00000526553	VARS	P26640	1264 aa	Known RBP	10.15	□□□□□ -0.78
CD44-223	ENST00000526553	SH3RF1	Q7Z6J0	888 aa		10.15	□□□□□ -0.78
CD44-223	ENST00000526553	BPHL	Q86WA6	291 aa	Predicted RBP	10.15	□□□□□ -0.78
CD44-223	ENST00000526553	FOXJ1	Q92949	421 aa		10.15	□□□□□ -0.78
CD44-223	ENST00000526553	MRGPRX2	Q96LB1	330 aa		10.15	□□□□□ -0.78
CD44-223	ENST00000526553	FLII	Q13045	1269 aa		10.14	□□□□□ -0.79
CD44-223	ENST00000526553	GPSM3	Q9Y4H4	160 aa		10.14	□□□□□ -0.79
CD44-223	ENST00000526553	GFRA3	O60609	400 aa		10.13	□□□□□ -0.79
CD44-223	ENST00000526553	TOR4A	Q9NXH8	423 aa		10.13	□□□□□ -0.79
CD44-223	ENST00000526553	AGER	Q15109	404 aa		10.12	□□□□□ -0.79
CD44-223	ENST00000526553	C4orf48	Q5BLP8	95 aa		10.12	□□□□□ -0.79
CD44-223	ENST00000526553	C1QTNF2	Q9BXJ5	285 aa		10.12	□□□□□ -0.79
CD44-223	ENST00000526553	PRM3	Q9NNZ6	103 aa		10.12	□□□□□ -0.79
CD44-223	ENST00000526553	SIAH2	O43255	324 aa		10.11	□□□□□ -0.79
CD44-223	ENST00000526553	GPR37L1	O60883	481 aa		10.11	□□□□□ -0.79
CD44-223	ENST00000526553	PTK2	Q05397	1052 aa		10.11	□□□□□ -0.79
CD44-223	ENST00000526553	CYP4X1	Q8N118	509 aa		10.11	□□□□□ -0.79
CD44-223	ENST00000526553	SNIP1	Q8TAD8	396 aa	Known RBP	10.11	□□□□□ -0.79
CD44-223	ENST00000526553	FAM174A	Q8TBP5	190 aa		10.11	□□□□□ -0.79
CD44-223	ENST00000526553	MPND	Q8N594	471 aa		10.1	□□□□□ -0.79
CD44-223	ENST00000526553	ARHGAP9	Q9BRR9	750 aa		10.1	□□□□□ -0.79
CD44-223	ENST00000526553	TBC1D2B	Q9UPU7	963 aa		10.09	□□□□□ -0.79
CD44-223	ENST00000526553	MAGEB6P1	A0A0J9YX57	407 aa		10.08	□□□□□ -0.8
CD44-223	ENST00000526553	TTC24	A2A3L6	582 aa	Predicted RBP	10.08	□□□□□ -0.8
CD44-223	ENST00000526553	TRMT44	Q8IYL2	757 aa	Known RBP	10.08	□□□□□ -0.8
CD44-223	ENST00000526553	OCSTAMP	Q9BR26	566 aa		10.08	□□□□□ -0.8
CD44-223	ENST00000526553	ERFE	Q4G0M1	354 aa		10.07	□□□□□ -0.8
CD44-223	ENST00000526553	CARD14	Q9BXL6	1004 aa		10.07	□□□□□ -0.8
CD44-223	ENST00000526553	ZBBX	A8MT70	800 aa		10.06	□□□□□ -0.8
CD44-223	ENST00000526553	ZBTB33	Q86T24	672 aa		10.06	□□□□□ -0.8
CD44-223	ENST00000526553	CDK15	Q96Q40	435 aa		10.06	□□□□□ -0.8
CD44-223	ENST00000526553	TLL2	Q9Y6L7	1015 aa		10.06	□□□□□ -0.8
CD44-223	ENST00000526553	ADAM32	Q8TC27	787 aa		10.05	□□□□□ -0.8
CD44-223	ENST00000526553	MAP4K5	Q9Y4K4	846 aa		10.05	□□□□□ -0.8
CD44-223	ENST00000526553	FAM187A	A6NFU0	413 aa		10.04	□□□□□ -0.8
CD44-223	ENST00000526553	DGAT1	O75907	488 aa		10.04	□□□□□ -0.8
CD44-223	ENST00000526553	ALDH1A1	P00352	501 aa		10.04	□□□□□ -0.8
CD44-223	ENST00000526553	FBXO45	P0C2W1	286 aa		10.04	□□□□□ -0.8
CD44-223	ENST00000526553	SMPD1	P17405	629 aa		10.04	□□□□□ -0.8
CD44-223	ENST00000526553	GDPD2	Q9HCC8	539 aa		10.04	□□□□□ -0.8
CD44-223	ENST00000526553	COG6	Q9Y2V7	657 aa		10.04	□□□□□ -0.8
CD44-223	ENST00000526553		J3QL48	77 aa		10.03	□□□□□ -0.8
CD44-223	ENST00000526553	NR1H3	Q13133	447 aa		10.03	□□□□□ -0.8
CD44-223	ENST00000526553	SLC10A4	Q96EP9	437 aa		10.03	□□□□□ -0.8
CD44-223	ENST00000526553	CDV3	Q9UKY7	258 aa	Known RBP	10.03	□□□□□ -0.8
CD44-223	ENST00000526553	UBTF	P17480	764 aa	Known RBP	10.02	□□□□□ -0.81
CD44-223	ENST00000526553	IRF5	Q13568	498 aa		10.02	□□□□□ -0.81
CD44-223	ENST00000526553	PKDCC	Q504Y2	493 aa		10.02	□□□□□ -0.81
CD44-223	ENST00000526553	ADH1C	P00326	375 aa		10.01	□□□□□ -0.81
CD44-223	ENST00000526553	WASF2	Q9Y6W5	498 aa		10.01	□□□□□ -0.81
CD44-223	ENST00000526553	RAD21	O60216	631 aa		10	□□□□□ -0.81
CD44-223	ENST00000526553	AVP	P01185	164 aa		10	□□□□□ -0.81
CD44-223	ENST00000526553	ABL2	P42684	1182 aa		10	□□□□□ -0.81
CD44-223	ENST00000526553	ZNF330	Q9Y3S2	320 aa	Predicted RBP	10	□□□□□ -0.81
CD44-223	ENST00000526553	ARID5B	Q14865	1188 aa		9.99	□□□□□ -0.81
CD44-223	ENST00000526553	VASH1	Q7L8A9	365 aa	Predicted RBP	9.99	□□□□□ -0.81
CD44-223	ENST00000526553	ZNF592	Q92610	1267 aa		9.99	□□□□□ -0.81
CD44-223	ENST00000526553	POM121	Q96HA1	1249 aa		9.99	□□□□□ -0.81
CD44-223	ENST00000526553	GRM5	P41594	1212 aa		9.98	□□□□□ -0.81
CD44-223	ENST00000526553	NR5A1	Q13285	461 aa		9.98	□□□□□ -0.81
CD44-223	ENST00000526553	WASHC4	Q2M389	1173 aa		9.98	□□□□□ -0.81
CD44-223	ENST00000526553		Q6ZNB5	142 aa		9.98	□□□□□ -0.81
CD44-223	ENST00000526553	DZIP3	Q86Y13	1208 aa	Known RBP	9.98	□□□□□ -0.81
CD44-223	ENST00000526553	GTF3C3	Q9Y5Q9	886 aa		9.98	□□□□□ -0.81
CD44-223	ENST00000526553	MCCD1	P59942	119 aa	Predicted RBP	9.97	□□□□□ -0.81
CD44-223	ENST00000526553	NBPF20	Q3BBV1	942 aa		9.97	□□□□□ -0.81
CD44-223	ENST00000526553	FSHR	P23945	695 aa		9.96	□□□□□ -0.82
CD44-223	ENST00000526553	NNT	Q13423	1086 aa		9.96	□□□□□ -0.82
CD44-223	ENST00000526553	WWC1	Q8IX03	1113 aa		9.96	□□□□□ -0.82
CD44-223	ENST00000526553	KCTD15	Q96SI1	283 aa	Predicted RBP	9.96	□□□□□ -0.82

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