RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 TOPAZ1Q8N9V7 1692 aa14.61□□□□□ -0.07
VPS28-204ENST00000526054 PHRF1Q9P1Y6 1649 aaKnown RBP14.59□□□□□ -0.07
VPS28-204ENST00000526054 SEPT12Q8IYM1 358 aa14.59□□□□□ -0.07
VPS28-204ENST00000526054 ZRANB1Q9UGI0 708 aa14.59□□□□□ -0.07
VPS28-204ENST00000526054 FAM83GA6ND36 823 aa14.58□□□□□ -0.08
VPS28-204ENST00000526054 NEUROD1Q13562 356 aa14.58□□□□□ -0.08
VPS28-204ENST00000526054 NGDNQ8NEJ9 315 aaKnown RBP14.58□□□□□ -0.08
VPS28-204ENST00000526054 SIN3AQ96ST3 1273 aa14.58□□□□□ -0.08
VPS28-204ENST00000526054 A0A0G2JS52 829 aa14.57□□□□□ -0.08
VPS28-204ENST00000526054 MYT1Q01538 1121 aa14.57□□□□□ -0.08
VPS28-204ENST00000526054 PAK3O75914 559 aaPredicted RBP14.56□□□□□ -0.08
VPS28-204ENST00000526054 BTG4Q9NY30 223 aa14.56□□□□□ -0.08
VPS28-204ENST00000526054 CLSPNQ9HAW4 1339 aa14.56□□□□□ -0.08
VPS28-204ENST00000526054 SF3B2Q13435 895 aaKnown RBP14.55□□□□□ -0.08
VPS28-204ENST00000526054 KRT27Q7Z3Y8 459 aa14.55□□□□□ -0.08
VPS28-204ENST00000526054 ONECUT3O60422 494 aaPredicted RBP14.54□□□□□ -0.08
VPS28-204ENST00000526054 NUDT16Q96DE0 195 aaKnown RBP14.54□□□□□ -0.08
VPS28-204ENST00000526054 TONSLQ96HA7 1378 aa14.54□□□□□ -0.08
VPS28-204ENST00000526054 THSD7AQ9UPZ6 1657 aa14.54□□□□□ -0.08
VPS28-204ENST00000526054 RGPD1P0DJD0 1748 aa14.53□□□□□ -0.08
VPS28-204ENST00000526054 QRICH2Q9H0J4 1663 aa14.53□□□□□ -0.08
VPS28-204ENST00000526054 FAM98CQ17RN3 349 aaKnown RBP14.53□□□□□ -0.08
VPS28-204ENST00000526054 PRDM11Q9NQV5 511 aa14.53□□□□□ -0.08
VPS28-204ENST00000526054 NRKQ7Z2Y5 1582 aa14.52□□□□□ -0.08
VPS28-204ENST00000526054 DEFB132Q7Z7B7 95 aa14.52□□□□□ -0.09
VPS28-204ENST00000526054 CCER1Q8TC90 406 aaPredicted RBP14.52□□□□□ -0.09
VPS28-204ENST00000526054 CDK19Q9BWU1 502 aa14.52□□□□□ -0.09
VPS28-204ENST00000526054 POLR3AO14802 1390 aaPredicted RBP14.51□□□□□ -0.09
VPS28-204ENST00000526054 KIAA0232Q92628 1395 aa14.51□□□□□ -0.09
VPS28-204ENST00000526054 L3MBTL2Q969R5 705 aa14.51□□□□□ -0.09
VPS28-204ENST00000526054 SPATA31A5Q5VU36 1347 aa14.5□□□□□ -0.09
VPS28-204ENST00000526054 SPATA31A7Q8IWB4 1347 aa14.5□□□□□ -0.09
VPS28-204ENST00000526054 CCDC61Q9Y6R9 512 aa14.49□□□□□ -0.09
VPS28-204ENST00000526054 TNS1Q9HBL0 1735 aaKnown RBP14.49□□□□□ -0.09
VPS28-204ENST00000526054 ACEP12821 1306 aa14.48□□□□□ -0.09
VPS28-204ENST00000526054 PPIP5K1Q6PFW1 1433 aa14.48□□□□□ -0.09
VPS28-204ENST00000526054 CENPJQ9HC77 1338 aaPredicted RBP14.47□□□□□ -0.09
VPS28-204ENST00000526054 BAG6P46379 1132 aa14.47□□□□□ -0.09
VPS28-204ENST00000526054 CHRNA2Q15822 529 aa14.47□□□□□ -0.09
VPS28-204ENST00000526054 NBPF1Q3BBV0 1214 aa14.47□□□□□ -0.09
VPS28-204ENST00000526054 NUTM2GQ5VZR2 741 aa14.47□□□□□ -0.09
VPS28-204ENST00000526054 TRPM1Q7Z4N2 1603 aa14.47□□□□□ -0.09
VPS28-204ENST00000526054 LMO7Q8WWI1 1683 aa14.46□□□□□ -0.09
VPS28-204ENST00000526054 LRP5O75197 1615 aa14.46□□□□□ -0.09
VPS28-204ENST00000526054 PLEKHG3A1L390 1219 aa14.46□□□□□ -0.09
VPS28-204ENST00000526054 SRPK2P78362 688 aaKnown RBP14.46□□□□□ -0.09
VPS28-204ENST00000526054 NBPF8Q3BBV2 869 aa14.46□□□□□ -0.09
VPS28-204ENST00000526054 STRN4Q9NRL3 753 aa14.46□□□□□ -0.09
VPS28-204ENST00000526054 SPATA31A1Q5TZJ5 1347 aa14.45□□□□□ -0.1
VPS28-204ENST00000526054 ZC3H6P61129 1189 aaKnown RBP14.45□□□□□ -0.1
VPS28-204ENST00000526054 SSH2Q76I76 1423 aa14.44□□□□□ -0.1
VPS28-204ENST00000526054 FAM182BQ5T319 152 aa14.44□□□□□ -0.1
VPS28-204ENST00000526054 ABTB2Q8N961 1025 aa14.44□□□□□ -0.1
VPS28-204ENST00000526054 USP19O94966 1318 aa14.43□□□□□ -0.1
VPS28-204ENST00000526054 CPDO75976 1380 aa14.43□□□□□ -0.1
VPS28-204ENST00000526054 CAMTA1Q9Y6Y1 1673 aa14.42□□□□□ -0.1
VPS28-204ENST00000526054 DISP2A7MBM2 1401 aa14.42□□□□□ -0.1
VPS28-204ENST00000526054 CABP2Q9NPB3 220 aa14.42□□□□□ -0.1
VPS28-204ENST00000526054 TIMELESSQ9UNS1 1208 aa14.42□□□□□ -0.1
VPS28-204ENST00000526054 USP6P35125 1406 aa14.41□□□□□ -0.1
VPS28-204ENST00000526054 USP35Q9P2H5 1018 aa14.41□□□□□ -0.1
VPS28-204ENST00000526054 BRD4O60885 1362 aaPredicted RBP14.41□□□□□ -0.1
VPS28-204ENST00000526054 PIK3C2AO00443 1686 aa14.4□□□□□ -0.1
VPS28-204ENST00000526054 EVA1CP58658 441 aa14.4□□□□□ -0.1
VPS28-204ENST00000526054 EN1Q05925 392 aaPredicted RBP14.4□□□□□ -0.1
VPS28-204ENST00000526054 NLRP13Q86W25 1043 aa14.4□□□□□ -0.1
VPS28-204ENST00000526054 PARP4Q9UKK3 1724 aaKnown RBP14.4□□□□□ -0.1
VPS28-204ENST00000526054 SLIT3O75094 1523 aa14.4□□□□□ -0.1
VPS28-204ENST00000526054 COL5A2P05997 1499 aaPredicted RBP14.39□□□□□ -0.11
VPS28-204ENST00000526054 ROCK2O75116 1388 aaKnown RBP14.39□□□□□ -0.11
VPS28-204ENST00000526054 PSDA5PKW4 1024 aaPredicted RBP14.39□□□□□ -0.11
VPS28-204ENST00000526054 AKAP12Q02952 1782 aa14.38□□□□□ -0.11
VPS28-204ENST00000526054 LARP1Q6PKG0 1096 aaKnown RBP14.38□□□□□ -0.11
VPS28-204ENST00000526054 FAM196AQ6ZSG2 479 aa14.38□□□□□ -0.11
VPS28-204ENST00000526054 BARGINQ6ZT62 677 aa14.38□□□□□ -0.11
VPS28-204ENST00000526054 RREB1Q92766 1687 aa14.37□□□□□ -0.11
VPS28-204ENST00000526054 WNK3Q9BYP7 1800 aa14.37□□□□□ -0.11
VPS28-204ENST00000526054 GCP02774 474 aa14.37□□□□□ -0.11
VPS28-204ENST00000526054 EVC2Q86UK5 1308 aa14.37□□□□□ -0.11
VPS28-204ENST00000526054 TRIM37O94972 964 aa14.36□□□□□ -0.11
VPS28-204ENST00000526054 TCP11L2Q8N4U5 519 aa14.36□□□□□ -0.11
VPS28-204ENST00000526054 CABP1Q9NZU7 370 aa14.36□□□□□ -0.11
VPS28-204ENST00000526054 LRRC37A3O60309 1634 aa14.36□□□□□ -0.11
VPS28-204ENST00000526054 NUP188Q5SRE5 1749 aa14.35□□□□□ -0.11
VPS28-204ENST00000526054 CRB1P82279 1406 aa14.35□□□□□ -0.11
VPS28-204ENST00000526054 ZBTB7CA1YPR0 619 aa14.35□□□□□ -0.11
VPS28-204ENST00000526054 PDE3BQ13370 1112 aa14.35□□□□□ -0.11
VPS28-204ENST00000526054 PARD3Q8TEW0 1356 aa14.34□□□□□ -0.11
VPS28-204ENST00000526054 NLRP6P59044 892 aa14.34□□□□□ -0.11
VPS28-204ENST00000526054 EZH2Q15910 746 aaKnown RBP14.34□□□□□ -0.11
VPS28-204ENST00000526054 THRAP3Q9Y2W1 955 aaKnown RBP14.34□□□□□ -0.11
VPS28-204ENST00000526054 COL18A1P39060 1754 aa14.34□□□□□ -0.11
VPS28-204ENST00000526054 AATKQ6ZMQ8 1374 aa14.34□□□□□ -0.11
VPS28-204ENST00000526054 MON2Q7Z3U7 1717 aa14.33□□□□□ -0.12
VPS28-204ENST00000526054 R3HDM1Q15032 1099 aaKnown RBP14.33□□□□□ -0.12
VPS28-204ENST00000526054 CPSF1Q10570 1443 aaKnown RBP14.32□□□□□ -0.12
VPS28-204ENST00000526054 APBA3O96018 575 aa14.32□□□□□ -0.12
VPS28-204ENST00000526054 CARD11Q9BXL7 1154 aa14.32□□□□□ -0.12
VPS28-204ENST00000526054 PEAK1Q9H792 1746 aa14.32□□□□□ -0.12
VPS28-204ENST00000526054 CAMKK2Q96RR4 588 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms