RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 SKOR1P84550 965 aa11.56□□□□□ -0.56
CPNE3-207ENST00000523588 ARMC2Q8NEN0 867 aa11.56□□□□□ -0.56
CPNE3-207ENST00000523588 APBB1O00213 710 aa11.55□□□□□ -0.56
CPNE3-207ENST00000523588 SH3BP2P78314 561 aa11.55□□□□□ -0.56
CPNE3-207ENST00000523588 LINC01559Q495D7 138 aa11.55□□□□□ -0.56
CPNE3-207ENST00000523588 ZNF598Q86UK7 904 aaKnown RBP11.55□□□□□ -0.56
CPNE3-207ENST00000523588 ZNF511Q8NB15 262 aa11.55□□□□□ -0.56
CPNE3-207ENST00000523588 NDUFB9Q9Y6M9 179 aa11.55□□□□□ -0.56
CPNE3-207ENST00000523588 WNT7BP56706 349 aa11.54□□□□□ -0.56
CPNE3-207ENST00000523588 TBC1D2BQ9UPU7 963 aa11.54□□□□□ -0.56
CPNE3-207ENST00000523588 ZC3H4Q9UPT8 1303 aaKnown RBP11.53□□□□□ -0.56
CPNE3-207ENST00000523588 ZNF697Q5TEC3 545 aa11.52□□□□□ -0.57
CPNE3-207ENST00000523588 NBPF14Q5TI25 921 aa11.52□□□□□ -0.57
CPNE3-207ENST00000523588 GPKOWQ92917 476 aaPredicted RBP eCLIP11.52□□□□□ -0.57
CPNE3-207ENST00000523588 PDXDC2PQ6P474 469 aa11.51□□□□□ -0.57
CPNE3-207ENST00000523588 FOXJ1Q92949 421 aa11.51□□□□□ -0.57
CPNE3-207ENST00000523588 POM121Q96HA1 1249 aa11.51□□□□□ -0.57
CPNE3-207ENST00000523588 COG6Q9Y2V7 657 aa11.51□□□□□ -0.57
CPNE3-207ENST00000523588 SH3BP5LQ7L8J4 393 aa11.5□□□□□ -0.57
CPNE3-207ENST00000523588 PNMA1Q8ND90 353 aa11.5□□□□□ -0.57
CPNE3-207ENST00000523588 GDPD2Q9HCC8 539 aa11.5□□□□□ -0.57
CPNE3-207ENST00000523588 UBTFP17480 764 aaKnown RBP11.49□□□□□ -0.57
CPNE3-207ENST00000523588 C4orf48Q5BLP8 95 aa11.49□□□□□ -0.57
CPNE3-207ENST00000523588 SH3RF1Q7Z6J0 888 aa11.49□□□□□ -0.57
CPNE3-207ENST00000523588 OCSTAMPQ9BR26 566 aa11.49□□□□□ -0.57
CPNE3-207ENST00000523588 PKD2L1Q9P0L9 805 aa11.49□□□□□ -0.57
CPNE3-207ENST00000523588 RC3H1Q5TC82 1133 aaKnown RBP11.48□□□□□ -0.57
CPNE3-207ENST00000523588 TRIM67Q6ZTA4 783 aa11.48□□□□□ -0.57
CPNE3-207ENST00000523588 PRM3Q9NNZ6 103 aa11.48□□□□□ -0.57
CPNE3-207ENST00000523588 WNT7AO00755 349 aa11.47□□□□□ -0.57
CPNE3-207ENST00000523588 IRF5Q13568 498 aa11.47□□□□□ -0.57
CPNE3-207ENST00000523588 GDF9O60383 454 aa11.46□□□□□ -0.57
CPNE3-207ENST00000523588 GPSM3Q9Y4H4 160 aa11.46□□□□□ -0.57
CPNE3-207ENST00000523588 BPHLQ86WA6 291 aaPredicted RBP11.45□□□□□ -0.58
CPNE3-207ENST00000523588 CLUAP1Q96AJ1 413 aa11.45□□□□□ -0.58
CPNE3-207ENST00000523588 ABL2P42684 1182 aa11.44□□□□□ -0.58
CPNE3-207ENST00000523588 PTK2Q05397 1052 aa11.44□□□□□ -0.58
CPNE3-207ENST00000523588 FOXC1Q12948 553 aa11.44□□□□□ -0.58
CPNE3-207ENST00000523588 MRGPRX2Q96LB1 330 aa11.44□□□□□ -0.58
CPNE3-207ENST00000523588 FBXO45P0C2W1 286 aa11.43□□□□□ -0.58
CPNE3-207ENST00000523588 VARSP26640 1264 aaKnown RBP11.43□□□□□ -0.58
CPNE3-207ENST00000523588 EHBP1Q8NDI1 1231 aa11.43□□□□□ -0.58
CPNE3-207ENST00000523588 ARHGAP9Q9BRR9 750 aa11.43□□□□□ -0.58
CPNE3-207ENST00000523588 C1QTNF2Q9BXJ5 285 aa11.43□□□□□ -0.58
CPNE3-207ENST00000523588 ZBBXA8MT70 800 aa11.42□□□□□ -0.58
CPNE3-207ENST00000523588 SIAH2O43255 324 aa11.42□□□□□ -0.58
CPNE3-207ENST00000523588 RAD21O60216 631 aa11.42□□□□□ -0.58
CPNE3-207ENST00000523588 AGERQ15109 404 aa11.42□□□□□ -0.58
CPNE3-207ENST00000523588 MAGEB6P1A0A0J9YX57 407 aa11.41□□□□□ -0.58
CPNE3-207ENST00000523588 PRR20EP86478 221 aa11.41□□□□□ -0.58
CPNE3-207ENST00000523588 PRR20CP86479 221 aa11.41□□□□□ -0.58
CPNE3-207ENST00000523588 PRR20DP86480 221 aa11.41□□□□□ -0.58
CPNE3-207ENST00000523588 PRR20BP86481 221 aa11.41□□□□□ -0.58
CPNE3-207ENST00000523588 PRR20AP86496 221 aa11.41□□□□□ -0.58
CPNE3-207ENST00000523588 CARD14Q9BXL6 1004 aa11.41□□□□□ -0.58
CPNE3-207ENST00000523588 TNFRSF10AO00220 468 aa11.4□□□□□ -0.58
CPNE3-207ENST00000523588 NR1H3Q13133 447 aa11.4□□□□□ -0.58
CPNE3-207ENST00000523588 ERFEQ4G0M1 354 aa11.4□□□□□ -0.58
CPNE3-207ENST00000523588 ADAM32Q8TC27 787 aa11.4□□□□□ -0.58
CPNE3-207ENST00000523588 A6NJR5 290 aa11.39□□□□□ -0.59
CPNE3-207ENST00000523588 FNBP4Q8N3X1 1017 aaPredicted RBP11.39□□□□□ -0.59
CPNE3-207ENST00000523588 ZBTB33Q86T24 672 aa11.38□□□□□ -0.59
CPNE3-207ENST00000523588 TRMT44Q8IYL2 757 aaKnown RBP11.38□□□□□ -0.59
CPNE3-207ENST00000523588 FAM174AQ8TBP5 190 aa11.38□□□□□ -0.59
CPNE3-207ENST00000523588 MPNDQ8N594 471 aa11.37□□□□□ -0.59
CPNE3-207ENST00000523588 TOR4AQ9NXH8 423 aa11.37□□□□□ -0.59
CPNE3-207ENST00000523588 PDZRN3Q9UPQ7 1066 aa11.37□□□□□ -0.59
CPNE3-207ENST00000523588 VAC14Q08AM6 782 aa11.35□□□□□ -0.59
CPNE3-207ENST00000523588 WASHC4Q2M389 1173 aa11.35□□□□□ -0.59
CPNE3-207ENST00000523588 PROSER2Q86WR7 435 aaPredicted RBP11.35□□□□□ -0.59
CPNE3-207ENST00000523588 SNIP1Q8TAD8 396 aaKnown RBP11.35□□□□□ -0.59
CPNE3-207ENST00000523588 CDK15Q96Q40 435 aa11.35□□□□□ -0.59
CPNE3-207ENST00000523588 TLL2Q9Y6L7 1015 aa11.35□□□□□ -0.59
CPNE3-207ENST00000523588 CYP4X1Q8N118 509 aa11.33□□□□□ -0.6
CPNE3-207ENST00000523588 ZMYND15Q9H091 742 aa11.33□□□□□ -0.6
CPNE3-207ENST00000523588 GFRA3O60609 400 aa11.31□□□□□ -0.6
CPNE3-207ENST00000523588 C14orf37Q86TY3 774 aa11.31□□□□□ -0.6
CPNE3-207ENST00000523588 MAP4K5Q9Y4K4 846 aa11.31□□□□□ -0.6
CPNE3-207ENST00000523588 PCDHB9Q9Y5E1 797 aa11.31□□□□□ -0.6
CPNE3-207ENST00000523588 TTC24A2A3L6 582 aaPredicted RBP11.3□□□□□ -0.6
CPNE3-207ENST00000523588 J3QL48 77 aa11.3□□□□□ -0.6
CPNE3-207ENST00000523588 ALDH1A1P00352 501 aa11.3□□□□□ -0.6
CPNE3-207ENST00000523588 SMPD1P17405 629 aa11.3□□□□□ -0.6
CPNE3-207ENST00000523588 GRM5P41594 1212 aa11.3□□□□□ -0.6
CPNE3-207ENST00000523588 WWC1Q8IX03 1113 aa11.3□□□□□ -0.6
CPNE3-207ENST00000523588 SLC10A4Q96EP9 437 aa11.3□□□□□ -0.6
CPNE3-207ENST00000523588 POM121CA8CG34 1229 aa11.29□□□□□ -0.6
CPNE3-207ENST00000523588 ARID5BQ14865 1188 aa11.29□□□□□ -0.6
CPNE3-207ENST00000523588 DZIP3Q86Y13 1208 aaKnown RBP11.29□□□□□ -0.6
CPNE3-207ENST00000523588 ZNF330Q9Y3S2 320 aaPredicted RBP11.29□□□□□ -0.6
CPNE3-207ENST00000523588 NRG2O14511 850 aaPredicted RBP11.28□□□□□ -0.6
CPNE3-207ENST00000523588 TRAK2O60296 914 aa11.28□□□□□ -0.6
CPNE3-207ENST00000523588 EIF4G2P78344 907 aaKnown RBP eCLIP11.28□□□□□ -0.6
CPNE3-207ENST00000523588 ADH1CP00326 375 aa11.27□□□□□ -0.61
CPNE3-207ENST00000523588 MCCD1P59942 119 aaPredicted RBP11.27□□□□□ -0.61
CPNE3-207ENST00000523588 VASH1Q7L8A9 365 aaPredicted RBP11.27□□□□□ -0.61
CPNE3-207ENST00000523588 IRX2Q9BZI1 471 aaPredicted RBP11.27□□□□□ -0.61
CPNE3-207ENST00000523588 CDV3Q9UKY7 258 aaKnown RBP11.27□□□□□ -0.61
CPNE3-207ENST00000523588 KCTD15Q96SI1 283 aaPredicted RBP11.26□□□□□ -0.61
CPNE3-207ENST00000523588 ALG2Q9H553 416 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms