RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 PPIP5K1Q6PFW1 1433 aa23.01■■□□□ 1.27
LSM1-205ENST00000523511 ABTB2Q8N961 1025 aa23■■□□□ 1.27
LSM1-205ENST00000523511 ITSN1Q15811 1721 aa22.99■■□□□ 1.27
LSM1-205ENST00000523511 NLRP13Q86W25 1043 aa22.98■■□□□ 1.27
LSM1-205ENST00000523511 GJD4Q96KN9 370 aaPredicted RBP22.98■■□□□ 1.27
LSM1-205ENST00000523511 ATAD2Q6PL18 1390 aa22.98■■□□□ 1.27
LSM1-205ENST00000523511 RALGAPBQ86X10 1494 aa22.98■■□□□ 1.27
LSM1-205ENST00000523511 CCER1Q8TC90 406 aaPredicted RBP22.97■■□□□ 1.27
LSM1-205ENST00000523511 FAM83GA6ND36 823 aa22.96■■□□□ 1.27
LSM1-205ENST00000523511 SBNO2Q9Y2G9 1366 aa22.96■■□□□ 1.27
LSM1-205ENST00000523511 BCL9LQ86UU0 1499 aa22.96■■□□□ 1.27
LSM1-205ENST00000523511 ATRNO75882 1429 aa22.95■■□□□ 1.26
LSM1-205ENST00000523511 CCDC9Q9Y3X0 531 aaKnown RBP22.95■■□□□ 1.26
LSM1-205ENST00000523511 QRICH2Q9H0J4 1663 aa22.94■■□□□ 1.26
LSM1-205ENST00000523511 PUS7Q96PZ0 661 aaKnown RBP22.94■■□□□ 1.26
LSM1-205ENST00000523511 PRDM11Q9NQV5 511 aa22.94■■□□□ 1.26
LSM1-205ENST00000523511 VPS72Q15906 364 aa22.93■■□□□ 1.26
LSM1-205ENST00000523511 SLIT2O94813 1529 aa22.92■■□□□ 1.26
LSM1-205ENST00000523511 NUTM2GQ5VZR2 741 aa22.92■■□□□ 1.26
LSM1-205ENST00000523511 BTG4Q9NY30 223 aa22.92■■□□□ 1.26
LSM1-205ENST00000523511 TMC1Q8TDI8 760 aa22.9■■□□□ 1.26
LSM1-205ENST00000523511 TRPM3Q9HCF6 1732 aaPredicted RBP22.89■■□□□ 1.26
LSM1-205ENST00000523511 ST20-MTHFSA0A0A6YYL1 179 aa22.89■■□□□ 1.25
LSM1-205ENST00000523511 NLRP6P59044 892 aa22.89■■□□□ 1.25
LSM1-205ENST00000523511 HDGFL2Q7Z4V5 671 aaPredicted RBP22.88■■□□□ 1.25
LSM1-205ENST00000523511 ZC3H6P61129 1189 aaKnown RBP22.87■■□□□ 1.25
LSM1-205ENST00000523511 TERF2IPQ9NYB0 399 aa22.87■■□□□ 1.25
LSM1-205ENST00000523511 RGS12O14924 1447 aa22.86■■□□□ 1.25
LSM1-205ENST00000523511 USP6P35125 1406 aa22.86■■□□□ 1.25
LSM1-205ENST00000523511 GCP02774 474 aa22.86■■□□□ 1.25
LSM1-205ENST00000523511 EVA1CP58658 441 aa22.86■■□□□ 1.25
LSM1-205ENST00000523511 UPF1Q92900 1129 aaKnown RBP eCLIP22.86■■□□□ 1.25
LSM1-205ENST00000523511 TOPAZ1Q8N9V7 1692 aa22.86■■□□□ 1.25
LSM1-205ENST00000523511 ALS2Q96Q42 1657 aa22.86■■□□□ 1.25
LSM1-205ENST00000523511 MARF1Q9Y4F3 1742 aaKnown RBP22.85■■□□□ 1.25
LSM1-205ENST00000523511 TTC21AQ8NDW8 1320 aa22.85■■□□□ 1.25
LSM1-205ENST00000523511 CDCA8Q53HL2 280 aa22.85■■□□□ 1.25
LSM1-205ENST00000523511 TMF1P82094 1093 aa22.84■■□□□ 1.25
LSM1-205ENST00000523511 KTN1Q86UP2 1357 aaKnown RBP22.84■■□□□ 1.25
LSM1-205ENST00000523511 KIAA0232Q92628 1395 aa22.84■■□□□ 1.25
LSM1-205ENST00000523511 KCNH5Q8NCM2 988 aa22.83■■□□□ 1.25
LSM1-205ENST00000523511 TTC21BQ7Z4L5 1316 aa22.82■■□□□ 1.24
LSM1-205ENST00000523511 USP19O94966 1318 aa22.82■■□□□ 1.24
LSM1-205ENST00000523511 A0A0G2JS52 829 aa22.81■■□□□ 1.24
LSM1-205ENST00000523511 ONECUT3O60422 494 aaPredicted RBP22.81■■□□□ 1.24
LSM1-205ENST00000523511 MYT1Q01538 1121 aa22.81■■□□□ 1.24
LSM1-205ENST00000523511 CHRNA2Q15822 529 aa22.81■■□□□ 1.24
LSM1-205ENST00000523511 SEPT12Q8IYM1 358 aa22.8■■□□□ 1.24
LSM1-205ENST00000523511 TESK2Q96S53 571 aa22.8■■□□□ 1.24
LSM1-205ENST00000523511 CPDO75976 1380 aa22.79■■□□□ 1.24
LSM1-205ENST00000523511 NINLQ9Y2I6 1382 aa22.79■■□□□ 1.24
LSM1-205ENST00000523511 CCDC125Q86Z20 511 aa22.79■■□□□ 1.24
LSM1-205ENST00000523511 SLC12A5Q9H2X9 1139 aa22.79■■□□□ 1.24
LSM1-205ENST00000523511 STRN4Q9NRL3 753 aa22.79■■□□□ 1.24
LSM1-205ENST00000523511 USP47Q96K76 1375 aa22.78■■□□□ 1.24
LSM1-205ENST00000523511 CPSF1Q10570 1443 aaKnown RBP22.78■■□□□ 1.24
LSM1-205ENST00000523511 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.78■■□□□ 1.24
LSM1-205ENST00000523511 COL14A1Q05707 1796 aaKnown RBP22.78■■□□□ 1.24
LSM1-205ENST00000523511 NWD2Q9ULI1 1742 aa22.77■■□□□ 1.24
LSM1-205ENST00000523511 SSH2Q76I76 1423 aa22.77■■□□□ 1.24
LSM1-205ENST00000523511 ZBTB7CA1YPR0 619 aa22.76■■□□□ 1.23
LSM1-205ENST00000523511 SPATA31A5Q5VU36 1347 aa22.76■■□□□ 1.23
LSM1-205ENST00000523511 SPATA31A7Q8IWB4 1347 aa22.76■■□□□ 1.23
LSM1-205ENST00000523511 FAM98CQ17RN3 349 aaKnown RBP22.75■■□□□ 1.23
LSM1-205ENST00000523511 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.75■■□□□ 1.23
LSM1-205ENST00000523511 ABCA3Q99758 1704 aa22.74■■□□□ 1.23
LSM1-205ENST00000523511 KRT27Q7Z3Y8 459 aa22.73■■□□□ 1.23
LSM1-205ENST00000523511 PLCH1Q4KWH8 1693 aa22.71■■□□□ 1.23
LSM1-205ENST00000523511 SF3B2Q13435 895 aaKnown RBP22.71■■□□□ 1.23
LSM1-205ENST00000523511 THRAP3Q9Y2W1 955 aaKnown RBP22.7■■□□□ 1.22
LSM1-205ENST00000523511 SPATA31A1Q5TZJ5 1347 aa22.7■■□□□ 1.22
LSM1-205ENST00000523511 AATKQ6ZMQ8 1374 aa22.7■■□□□ 1.22
LSM1-205ENST00000523511 GLI3P10071 1580 aa22.69■■□□□ 1.22
LSM1-205ENST00000523511 USP35Q9P2H5 1018 aa22.69■■□□□ 1.22
LSM1-205ENST00000523511 EDC4Q6P2E9 1401 aaKnown RBP22.68■■□□□ 1.22
LSM1-205ENST00000523511 SOX12O15370 315 aa22.68■■□□□ 1.22
LSM1-205ENST00000523511 EIF4G2P78344 907 aaKnown RBP eCLIP22.68■■□□□ 1.22
LSM1-205ENST00000523511 PHRF1Q9P1Y6 1649 aaKnown RBP22.68■■□□□ 1.22
LSM1-205ENST00000523511 USP31Q70CQ4 1352 aa22.67■■□□□ 1.22
LSM1-205ENST00000523511 BARGINQ6ZT62 677 aa22.67■■□□□ 1.22
LSM1-205ENST00000523511 ARHGEF25Q86VW2 580 aa22.67■■□□□ 1.22
LSM1-205ENST00000523511 TCP11L2Q8N4U5 519 aa22.67■■□□□ 1.22
LSM1-205ENST00000523511 CRYBG1Q9Y4K1 1723 aa22.66■■□□□ 1.22
LSM1-205ENST00000523511 LARP1Q6PKG0 1096 aaKnown RBP22.66■■□□□ 1.22
LSM1-205ENST00000523511 A0A1W2PP64 1363 aa22.65■■□□□ 1.22
LSM1-205ENST00000523511 NME9Q86XW9 330 aa22.65■■□□□ 1.22
LSM1-205ENST00000523511 NRKQ7Z2Y5 1582 aa22.64■■□□□ 1.22
LSM1-205ENST00000523511 SLIT3O75094 1523 aa22.64■■□□□ 1.21
LSM1-205ENST00000523511 CSB-PGBD3P0DP91 1061 aa22.64■■□□□ 1.21
LSM1-205ENST00000523511 PDE3BQ13370 1112 aa22.64■■□□□ 1.21
LSM1-205ENST00000523511 TOM1L2Q6ZVM7 507 aa22.64■■□□□ 1.21
LSM1-205ENST00000523511 COG3Q96JB2 828 aa22.64■■□□□ 1.21
LSM1-205ENST00000523511 CD163L1Q9NR16 1453 aa22.63■■□□□ 1.21
LSM1-205ENST00000523511 ANKRD36BQ8N2N9 1353 aa22.63■■□□□ 1.21
LSM1-205ENST00000523511 CAMTA1Q9Y6Y1 1673 aa22.62■■□□□ 1.21
LSM1-205ENST00000523511 AKAP12Q02952 1782 aa22.61■■□□□ 1.21
LSM1-205ENST00000523511 NRAPQ86VF7 1730 aa22.6■■□□□ 1.21
LSM1-205ENST00000523511 C11orf95C9JLR9 678 aaPredicted RBP22.6■■□□□ 1.21
LSM1-205ENST00000523511 ZRANB1Q9UGI0 708 aa22.6■■□□□ 1.21
LSM1-205ENST00000523511 PIK3C2AO00443 1686 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms