RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 KLHL40Q2TBA0 621 aa10.56□□□□□ -0.72
CSMD1-213ENST00000523488 ATP10BO94823 1461 aa10.56□□□□□ -0.72
CSMD1-213ENST00000523488 NUP155O75694 1391 aa10.56□□□□□ -0.72
CSMD1-213ENST00000523488 CCDC94Q9BW85 323 aaPredicted RBP10.55□□□□□ -0.72
CSMD1-213ENST00000523488 ZNF644Q9H582 1327 aaPredicted RBP10.55□□□□□ -0.72
CSMD1-213ENST00000523488 TNNT2P45379 298 aaPredicted RBP10.55□□□□□ -0.72
CSMD1-213ENST00000523488 MSNP26038 577 aaKnown RBP10.54□□□□□ -0.72
CSMD1-213ENST00000523488 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.54□□□□□ -0.72
CSMD1-213ENST00000523488 MRC2Q9UBG0 1479 aa10.54□□□□□ -0.72
CSMD1-213ENST00000523488 CFAP65Q6ZU64 1925 aaKnown RBP10.53□□□□□ -0.72
CSMD1-213ENST00000523488 NCLP19338 710 aaKnown RBP10.53□□□□□ -0.72
CSMD1-213ENST00000523488 FAM53CQ9NYF3 392 aa10.53□□□□□ -0.72
CSMD1-213ENST00000523488 ZFYVE16Q7Z3T8 1539 aa10.53□□□□□ -0.72
CSMD1-213ENST00000523488 TRAPPC8Q9Y2L5 1435 aa10.52□□□□□ -0.73
CSMD1-213ENST00000523488 SPTLC3Q9NUV7 552 aa10.52□□□□□ -0.73
CSMD1-213ENST00000523488 WDR63Q8IWG1 891 aa10.51□□□□□ -0.73
CSMD1-213ENST00000523488 PTCH1Q13635 1447 aa10.51□□□□□ -0.73
CSMD1-213ENST00000523488 CSPP1Q1MSJ5 1256 aa10.51□□□□□ -0.73
CSMD1-213ENST00000523488 TNPO1Q92973 898 aaKnown RBP10.51□□□□□ -0.73
CSMD1-213ENST00000523488 PCDHB15Q9Y5E8 787 aa10.51□□□□□ -0.73
CSMD1-213ENST00000523488 ZKSCAN5Q9Y2L8 839 aa10.5□□□□□ -0.73
CSMD1-213ENST00000523488 RARSP54136 660 aaKnown RBP10.5□□□□□ -0.73
CSMD1-213ENST00000523488 SYCP1Q15431 976 aa10.5□□□□□ -0.73
CSMD1-213ENST00000523488 LETM1O95202 739 aaPredicted RBP10.5□□□□□ -0.73
CSMD1-213ENST00000523488 FAM193AP78312 1265 aa10.5□□□□□ -0.73
CSMD1-213ENST00000523488 HMGN5P82970 282 aaKnown RBP10.5□□□□□ -0.73
CSMD1-213ENST00000523488 MYRIPQ8NFW9 859 aa10.5□□□□□ -0.73
CSMD1-213ENST00000523488 GTF2E1P29083 439 aaPredicted RBP10.49□□□□□ -0.73
CSMD1-213ENST00000523488 SASS6Q6UVJ0 657 aa10.49□□□□□ -0.73
CSMD1-213ENST00000523488 ZNF710Q8N1W2 664 aa10.49□□□□□ -0.73
CSMD1-213ENST00000523488 ZHX1Q9UKY1 873 aaPredicted RBP10.49□□□□□ -0.73
CSMD1-213ENST00000523488 PLCH2O75038 1416 aa10.49□□□□□ -0.73
CSMD1-213ENST00000523488 ANKRD7Q92527 254 aa10.49□□□□□ -0.73
CSMD1-213ENST00000523488 HECW2Q9P2P5 1572 aa10.49□□□□□ -0.73
CSMD1-213ENST00000523488 CANXP27824 592 aaKnown RBP10.49□□□□□ -0.73
CSMD1-213ENST00000523488 TAF3Q5VWG9 929 aa10.49□□□□□ -0.73
CSMD1-213ENST00000523488 PANK3Q9H999 370 aa10.49□□□□□ -0.73
CSMD1-213ENST00000523488 KIF24Q5T7B8 1368 aa10.49□□□□□ -0.73
CSMD1-213ENST00000523488 LRRC7Q96NW7 1537 aa10.49□□□□□ -0.73
CSMD1-213ENST00000523488 RSPH4AQ5TD94 716 aa10.48□□□□□ -0.73
CSMD1-213ENST00000523488 R3HCC1Q9Y3T6 440 aaKnown RBP10.48□□□□□ -0.73
CSMD1-213ENST00000523488 NRKQ7Z2Y5 1582 aa10.48□□□□□ -0.73
CSMD1-213ENST00000523488 ATAD2Q6PL18 1390 aa10.48□□□□□ -0.73
CSMD1-213ENST00000523488 AK9Q5TCS8 1911 aa10.48□□□□□ -0.73
CSMD1-213ENST00000523488 DLG5Q8TDM6 1919 aa10.47□□□□□ -0.73
CSMD1-213ENST00000523488 PUS7Q96PZ0 661 aaKnown RBP10.47□□□□□ -0.73
CSMD1-213ENST00000523488 C22orf23Q9BZE7 217 aa10.47□□□□□ -0.73
CSMD1-213ENST00000523488 PDZRN3Q9UPQ7 1066 aa10.47□□□□□ -0.73
CSMD1-213ENST00000523488 MYH15Q9Y2K3 1946 aa10.47□□□□□ -0.73
CSMD1-213ENST00000523488 CTIFO43310 598 aaKnown RBP10.47□□□□□ -0.73
CSMD1-213ENST00000523488 PRIMPOLQ96LW4 560 aa10.47□□□□□ -0.73
CSMD1-213ENST00000523488 NSD2O96028 1365 aa10.47□□□□□ -0.73
CSMD1-213ENST00000523488 DMRT2Q9Y5R5 561 aa10.47□□□□□ -0.73
CSMD1-213ENST00000523488 RAD50Q92878 1312 aa10.46□□□□□ -0.73
CSMD1-213ENST00000523488 BBXQ8WY36 941 aaPredicted RBP10.46□□□□□ -0.73
CSMD1-213ENST00000523488 PRDM10Q9NQV6 1147 aa10.46□□□□□ -0.73
CSMD1-213ENST00000523488 BCAR3O75815 825 aa10.46□□□□□ -0.73
CSMD1-213ENST00000523488 ABCC11Q96J66 1382 aa10.46□□□□□ -0.74
CSMD1-213ENST00000523488 IL16Q14005 1332 aa10.46□□□□□ -0.74
CSMD1-213ENST00000523488 TMF1P82094 1093 aa10.46□□□□□ -0.74
CSMD1-213ENST00000523488 WWC1Q8IX03 1113 aa10.46□□□□□ -0.74
CSMD1-213ENST00000523488 TMEM51Q9NW97 253 aa10.46□□□□□ -0.74
CSMD1-213ENST00000523488 NEXMIFQ5QGS0 1516 aa10.45□□□□□ -0.74
CSMD1-213ENST00000523488 CDK12Q9NYV4 1490 aaPredicted RBP10.45□□□□□ -0.74
CSMD1-213ENST00000523488 LMBRD1Q9NUN5 540 aa10.45□□□□□ -0.74
CSMD1-213ENST00000523488 CD109Q6YHK3 1445 aa10.44□□□□□ -0.74
CSMD1-213ENST00000523488 BMP2KLQ5H9B9 411 aa10.44□□□□□ -0.74
CSMD1-213ENST00000523488 RLBP1P12271 317 aa10.44□□□□□ -0.74
CSMD1-213ENST00000523488 NUCB1Q02818 461 aa10.44□□□□□ -0.74
CSMD1-213ENST00000523488 MVPQ14764 893 aaKnown RBP10.44□□□□□ -0.74
CSMD1-213ENST00000523488 GBP4Q96PP9 640 aa10.44□□□□□ -0.74
CSMD1-213ENST00000523488 CC2D1BQ5T0F9 858 aaKnown RBP10.43□□□□□ -0.74
CSMD1-213ENST00000523488 HSCBQ8IWL3 235 aa10.43□□□□□ -0.74
CSMD1-213ENST00000523488 ABCC3O15438 1527 aa10.43□□□□□ -0.74
CSMD1-213ENST00000523488 NBPF1Q3BBV0 1214 aa10.43□□□□□ -0.74
CSMD1-213ENST00000523488 BCL11BQ9C0K0 894 aaPredicted RBP10.43□□□□□ -0.74
CSMD1-213ENST00000523488 DNAJC5BQ9UF47 199 aa10.43□□□□□ -0.74
CSMD1-213ENST00000523488 TULP4Q9NRJ4 1543 aa10.43□□□□□ -0.74
CSMD1-213ENST00000523488 CHRM1P11229 460 aaPredicted RBP10.43□□□□□ -0.74
CSMD1-213ENST00000523488 NASPP49321 788 aaPredicted RBP10.43□□□□□ -0.74
CSMD1-213ENST00000523488 WDR43Q15061 677 aaKnown RBP eCLIP10.43□□□□□ -0.74
CSMD1-213ENST00000523488 RGPD1P0DJD0 1748 aa10.43□□□□□ -0.74
CSMD1-213ENST00000523488 TULP2O00295 520 aa10.42□□□□□ -0.74
CSMD1-213ENST00000523488 CDCA8Q53HL2 280 aa10.42□□□□□ -0.74
CSMD1-213ENST00000523488 UQCRHLA0A096LP55 91 aa10.42□□□□□ -0.74
CSMD1-213ENST00000523488 UQCRHP07919 91 aa10.42□□□□□ -0.74
CSMD1-213ENST00000523488 PDIA4P13667 645 aaKnown RBP10.42□□□□□ -0.74
CSMD1-213ENST00000523488 IPO4Q8TEX9 1081 aaKnown RBP10.42□□□□□ -0.74
CSMD1-213ENST00000523488 GOLGA6L22H0YM25 854 aa10.41□□□□□ -0.74
CSMD1-213ENST00000523488 CHMP7Q8WUX9 453 aaPredicted RBP10.41□□□□□ -0.74
CSMD1-213ENST00000523488 RWDD1Q9H446 243 aaPredicted RBP10.41□□□□□ -0.74
CSMD1-213ENST00000523488 CARMIL2Q6F5E8 1435 aa10.41□□□□□ -0.74
CSMD1-213ENST00000523488 LRRC37A3O60309 1634 aa10.41□□□□□ -0.74
CSMD1-213ENST00000523488 KDM2AQ9Y2K7 1162 aa10.41□□□□□ -0.74
CSMD1-213ENST00000523488 UGGT1Q9NYU2 1555 aa10.41□□□□□ -0.74
CSMD1-213ENST00000523488 SENP3Q9H4L4 574 aaPredicted RBP10.4□□□□□ -0.74
CSMD1-213ENST00000523488 PNPLA6Q8IY17 1366 aa10.4□□□□□ -0.74
CSMD1-213ENST00000523488 BAG4O95429 457 aaKnown RBP10.4□□□□□ -0.74
CSMD1-213ENST00000523488 FKBP5Q13451 457 aaPredicted RBP10.4□□□□□ -0.74
CSMD1-213ENST00000523488 CREBRFQ8IUR6 639 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms