RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 ACEP12821 1306 aa42.45■■■■■ 4.39
SYNPO-203ENST00000518872 SRPK2P78362 688 aaKnown RBP42.44■■■■■ 4.38
SYNPO-203ENST00000518872 UNC5CLQ8IV45 518 aa42.44■■■■■ 4.38
SYNPO-203ENST00000518872 RALGAPBQ86X10 1494 aa42.42■■■■■ 4.38
SYNPO-203ENST00000518872 PPIP5K1Q6PFW1 1433 aa42.41■■■■■ 4.38
SYNPO-203ENST00000518872 CABP2Q9NPB3 220 aa42.39■■■■■ 4.38
SYNPO-203ENST00000518872 PAK3O75914 559 aaPredicted RBP42.38■■■■■ 4.37
SYNPO-203ENST00000518872 GJD4Q96KN9 370 aaPredicted RBP42.38■■■■■ 4.37
SYNPO-203ENST00000518872 EVC2Q86UK5 1308 aa42.38■■■■■ 4.37
SYNPO-203ENST00000518872 SBNO2Q9Y2G9 1366 aa42.36■■■■■ 4.37
SYNPO-203ENST00000518872 UPF1Q92900 1129 aaKnown RBP eCLIP42.35■■■■■ 4.37
SYNPO-203ENST00000518872 BRD4O60885 1362 aaPredicted RBP42.35■■■■■ 4.37
SYNPO-203ENST00000518872 COL14A1Q05707 1796 aaKnown RBP42.34■■■■■ 4.37
SYNPO-203ENST00000518872 GLI3P10071 1580 aa42.34■■■■■ 4.37
SYNPO-203ENST00000518872 PHRF1Q9P1Y6 1649 aaKnown RBP42.32■■■■■ 4.37
SYNPO-203ENST00000518872 PLEKHG5O94827 1062 aa42.32■■■■■ 4.37
SYNPO-203ENST00000518872 FAM83GA6ND36 823 aa42.31■■■■■ 4.36
SYNPO-203ENST00000518872 NRAPQ86VF7 1730 aa42.31■■■■■ 4.36
SYNPO-203ENST00000518872 CARD11Q9BXL7 1154 aa42.29■■■■■ 4.36
SYNPO-203ENST00000518872 VPS72Q15906 364 aa42.28■■■■■ 4.36
SYNPO-203ENST00000518872 CABP1Q9NZU7 370 aa42.24■■■■■ 4.35
SYNPO-203ENST00000518872 USP6P35125 1406 aa42.23■■■■■ 4.35
SYNPO-203ENST00000518872 ATAD2Q6PL18 1390 aa42.22■■■■■ 4.35
SYNPO-203ENST00000518872 ABTB2Q8N961 1025 aa42.19■■■■■ 4.34
SYNPO-203ENST00000518872 USP19O94966 1318 aa42.19■■■■■ 4.34
SYNPO-203ENST00000518872 AKAP12Q02952 1782 aa42.18■■■■■ 4.34
SYNPO-203ENST00000518872 SSH2Q76I76 1423 aa42.18■■■■■ 4.34
SYNPO-203ENST00000518872 NRKQ7Z2Y5 1582 aa42.18■■■■■ 4.34
SYNPO-203ENST00000518872 BTG4Q9NY30 223 aa42.17■■■■■ 4.34
SYNPO-203ENST00000518872 PRDM11Q9NQV5 511 aa42.15■■■■■ 4.34
SYNPO-203ENST00000518872 CLSPNQ9HAW4 1339 aa42.15■■■■■ 4.34
SYNPO-203ENST00000518872 KIAA0232Q92628 1395 aa42.14■■■■■ 4.34
SYNPO-203ENST00000518872 ONECUT3O60422 494 aaPredicted RBP42.14■■■■■ 4.34
SYNPO-203ENST00000518872 NUTM2GQ5VZR2 741 aa42.13■■■■■ 4.33
SYNPO-203ENST00000518872 NLRP13Q86W25 1043 aa42.12■■■■■ 4.33
SYNPO-203ENST00000518872 ZNF692Q9BU19 519 aaPredicted RBP42.11■■■■■ 4.33
SYNPO-203ENST00000518872 BRWD3Q6RI45 1802 aa42.11■■■■■ 4.33
SYNPO-203ENST00000518872 CPDO75976 1380 aa42.1■■■■■ 4.33
SYNPO-203ENST00000518872 CPSF1Q10570 1443 aaKnown RBP42.09■■■■■ 4.33
SYNPO-203ENST00000518872 CCDC9Q9Y3X0 531 aaKnown RBP42.07■■■■■ 4.33
SYNPO-203ENST00000518872 PIK3C2AO00443 1686 aa42.06■■■■■ 4.32
SYNPO-203ENST00000518872 EP400Q96L91 3159 aa42.06■■■■■ 4.32
SYNPO-203ENST00000518872 TIMELESSQ9UNS1 1208 aa42.05■■■■■ 4.32
SYNPO-203ENST00000518872 ZC3H6P61129 1189 aaKnown RBP42.04■■■■■ 4.32
SYNPO-203ENST00000518872 PUS7Q96PZ0 661 aaKnown RBP42.04■■■■■ 4.32
SYNPO-203ENST00000518872 SLIT3O75094 1523 aa42.04■■■■■ 4.32
SYNPO-203ENST00000518872 MON2Q7Z3U7 1717 aa42.03■■■■■ 4.32
SYNPO-203ENST00000518872 LMO7Q8WWI1 1683 aa42.03■■■■■ 4.32
SYNPO-203ENST00000518872 SEPT12Q8IYM1 358 aa42.02■■■■■ 4.32
SYNPO-203ENST00000518872 SPATA31A5Q5VU36 1347 aa42.01■■■■■ 4.32
SYNPO-203ENST00000518872 SPATA31A7Q8IWB4 1347 aa42.01■■■■■ 4.32
SYNPO-203ENST00000518872 GCP02774 474 aa42.01■■■■■ 4.32
SYNPO-203ENST00000518872 CHRNA2Q15822 529 aa41.99■■■■■ 4.31
SYNPO-203ENST00000518872 TTC21BQ7Z4L5 1316 aa41.98■■■■■ 4.31
SYNPO-203ENST00000518872 TTC21AQ8NDW8 1320 aa41.97■■■■■ 4.31
SYNPO-203ENST00000518872 SLC24A1O60721 1099 aa41.97■■■■■ 4.31
SYNPO-203ENST00000518872 NLRP6P59044 892 aa41.97■■■■■ 4.31
SYNPO-203ENST00000518872 TESK2Q96S53 571 aa41.96■■■■■ 4.31
SYNPO-203ENST00000518872 CCDC125Q86Z20 511 aa41.95■■■■■ 4.31
SYNPO-203ENST00000518872 PCGF6Q9BYE7 350 aa41.95■■■■■ 4.31
SYNPO-203ENST00000518872 CAMTA1Q9Y6Y1 1673 aa41.95■■■■■ 4.31
SYNPO-203ENST00000518872 CD163L1Q9NR16 1453 aa41.94■■■■■ 4.3
SYNPO-203ENST00000518872 KTN1Q86UP2 1357 aaKnown RBP41.94■■■■■ 4.3
SYNPO-203ENST00000518872 THSD7AQ9UPZ6 1657 aa41.93■■■■■ 4.3
SYNPO-203ENST00000518872 ST20-MTHFSA0A0A6YYL1 179 aa41.92■■■■■ 4.3
SYNPO-203ENST00000518872 FAM98CQ17RN3 349 aaKnown RBP41.91■■■■■ 4.3
SYNPO-203ENST00000518872 SPATA31A1Q5TZJ5 1347 aa41.91■■■■■ 4.3
SYNPO-203ENST00000518872 USP54Q70EL1 1684 aa41.89■■■■■ 4.3
SYNPO-203ENST00000518872 KRT27Q7Z3Y8 459 aa41.88■■■■■ 4.29
SYNPO-203ENST00000518872 STRN4Q9NRL3 753 aa41.85■■■■■ 4.29
SYNPO-203ENST00000518872 AATKQ6ZMQ8 1374 aa41.85■■■■■ 4.29
SYNPO-203ENST00000518872 NINLQ9Y2I6 1382 aa41.85■■■■■ 4.29
SYNPO-203ENST00000518872 COL18A1P39060 1754 aa41.84■■■■■ 4.29
SYNPO-203ENST00000518872 USP47Q96K76 1375 aa41.84■■■■■ 4.29
SYNPO-203ENST00000518872 BLMP54132 1417 aaPredicted RBP41.83■■■■■ 4.29
SYNPO-203ENST00000518872 COL5A2P05997 1499 aaPredicted RBP41.83■■■■■ 4.29
SYNPO-203ENST00000518872 KCNH5Q8NCM2 988 aa41.82■■■■■ 4.29
SYNPO-203ENST00000518872 USP31Q70CQ4 1352 aa41.81■■■■■ 4.28
SYNPO-203ENST00000518872 EVA1CP58658 441 aa41.81■■■■■ 4.28
SYNPO-203ENST00000518872 HDGFL2Q7Z4V5 671 aaPredicted RBP41.81■■■■■ 4.28
SYNPO-203ENST00000518872 TMC1Q8TDI8 760 aa41.81■■■■■ 4.28
SYNPO-203ENST00000518872 SLC12A5Q9H2X9 1139 aa41.81■■■■■ 4.28
SYNPO-203ENST00000518872 A0A0G2JS52 829 aa41.8■■■■■ 4.28
SYNPO-203ENST00000518872 MYT1Q01538 1121 aa41.8■■■■■ 4.28
SYNPO-203ENST00000518872 EDC4Q6P2E9 1401 aaKnown RBP41.79■■■■■ 4.28
SYNPO-203ENST00000518872 BARGINQ6ZT62 677 aa41.78■■■■■ 4.28
SYNPO-203ENST00000518872 TERF2IPQ9NYB0 399 aa41.78■■■■■ 4.28
SYNPO-203ENST00000518872 NFAT5O94916 1531 aa41.78■■■■■ 4.28
SYNPO-203ENST00000518872 A0A1W2PP64 1363 aa41.76■■■■■ 4.28
SYNPO-203ENST00000518872 LARP1Q6PKG0 1096 aaKnown RBP41.75■■■■■ 4.27
SYNPO-203ENST00000518872 ARHGEF25Q86VW2 580 aa41.75■■■■■ 4.27
SYNPO-203ENST00000518872 ABCC6O95255 1503 aa41.74■■■■■ 4.27
SYNPO-203ENST00000518872 THRAP3Q9Y2W1 955 aaKnown RBP41.72■■■■■ 4.27
SYNPO-203ENST00000518872 CRB1P82279 1406 aa41.7■■■■■ 4.27
SYNPO-203ENST00000518872 SUGP2Q8IX01 1082 aaKnown RBP eCLIP41.7■■■■■ 4.27
SYNPO-203ENST00000518872 TCP11L2Q8N4U5 519 aa41.7■■■■■ 4.27
SYNPO-203ENST00000518872 TMF1P82094 1093 aa41.69■■■■■ 4.26
SYNPO-203ENST00000518872 RGPD5Q99666 1765 aa41.66■■■■■ 4.26
SYNPO-203ENST00000518872 NME9Q86XW9 330 aa41.66■■■■■ 4.26
SYNPO-203ENST00000518872 USP35Q9P2H5 1018 aa41.66■■■■■ 4.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms