RNA–Protein interactions for RNA: ENST00000517514.1

CLN8-202, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

TSL 4

Gene CLN8, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-202ENST00000517514 KIF20BQ96Q89 1820 aa13.71□□□□□ -0.22
CLN8-202ENST00000517514 KTN1Q86UP2 1357 aaKnown RBP13.71□□□□□ -0.22
CLN8-202ENST00000517514 PER1O15534 1290 aaPredicted RBP13.7□□□□□ -0.22
CLN8-202ENST00000517514 EDC4Q6P2E9 1401 aaKnown RBP13.7□□□□□ -0.22
CLN8-202ENST00000517514 SBNO1A3KN83 1393 aa13.7□□□□□ -0.22
CLN8-202ENST00000517514 TTC21BQ7Z4L5 1316 aa13.69□□□□□ -0.22
CLN8-202ENST00000517514 HSPA1LP34931 641 aa13.69□□□□□ -0.22
CLN8-202ENST00000517514 PSME1Q06323 249 aa13.69□□□□□ -0.22
CLN8-202ENST00000517514 ZNF692Q9BU19 519 aaPredicted RBP13.69□□□□□ -0.22
CLN8-202ENST00000517514 TERF2IPQ9NYB0 399 aa13.69□□□□□ -0.22
CLN8-202ENST00000517514 COL22A1Q8NFW1 1626 aaPredicted RBP13.68□□□□□ -0.22
CLN8-202ENST00000517514 SPATA31A3Q5VYP0 1347 aa13.68□□□□□ -0.22
CLN8-202ENST00000517514 ABCA3Q99758 1704 aa13.68□□□□□ -0.22
CLN8-202ENST00000517514 NSD3Q9BZ95 1437 aa13.68□□□□□ -0.22
CLN8-202ENST00000517514 HDGFL2Q7Z4V5 671 aaPredicted RBP13.68□□□□□ -0.22
CLN8-202ENST00000517514 SHPRHQ149N8 1683 aa13.68□□□□□ -0.22
CLN8-202ENST00000517514 ANKRD26Q9UPS8 1709 aa13.67□□□□□ -0.22
CLN8-202ENST00000517514 TNS3Q68CZ2 1445 aa13.67□□□□□ -0.22
CLN8-202ENST00000517514 DDX10Q13206 875 aaKnown RBP13.67□□□□□ -0.22
CLN8-202ENST00000517514 ZRANB1Q9UGI0 708 aa13.67□□□□□ -0.22
CLN8-202ENST00000517514 BRD4O60885 1362 aaPredicted RBP13.67□□□□□ -0.22
CLN8-202ENST00000517514 MED1Q15648 1581 aaPredicted RBP13.66□□□□□ -0.22
CLN8-202ENST00000517514 PHRF1Q9P1Y6 1649 aaKnown RBP13.65□□□□□ -0.22
CLN8-202ENST00000517514 NME9Q86XW9 330 aa13.65□□□□□ -0.22
CLN8-202ENST00000517514 PNPLA6Q8IY17 1366 aa13.65□□□□□ -0.22
CLN8-202ENST00000517514 TTC21AQ8NDW8 1320 aa13.64□□□□□ -0.23
CLN8-202ENST00000517514 USP31Q70CQ4 1352 aa13.64□□□□□ -0.23
CLN8-202ENST00000517514 FYB1O15117 783 aa13.64□□□□□ -0.23
CLN8-202ENST00000517514 AMER1Q5JTC6 1135 aaPredicted RBP13.64□□□□□ -0.23
CLN8-202ENST00000517514 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.64□□□□□ -0.23
CLN8-202ENST00000517514 OVOS2A0A0J9YW53 1432 aa13.64□□□□□ -0.23
CLN8-202ENST00000517514 OVOS2Q6IE36 1432 aa13.64□□□□□ -0.23
CLN8-202ENST00000517514 SLIT3O75094 1523 aa13.63□□□□□ -0.23
CLN8-202ENST00000517514 PAK3O75914 559 aaPredicted RBP13.62□□□□□ -0.23
CLN8-202ENST00000517514 NUTM2GQ5VZR2 741 aa13.62□□□□□ -0.23
CLN8-202ENST00000517514 LRRC59Q96AG4 307 aaKnown RBP13.62□□□□□ -0.23
CLN8-202ENST00000517514 USP19O94966 1318 aa13.61□□□□□ -0.23
CLN8-202ENST00000517514 ARHGEF10O15013 1369 aa13.6□□□□□ -0.23
CLN8-202ENST00000517514 NFAT5O94916 1531 aa13.6□□□□□ -0.23
CLN8-202ENST00000517514 ABTB2Q8N961 1025 aa13.6□□□□□ -0.23
CLN8-202ENST00000517514 PHF23Q9BUL5 403 aaPredicted RBP13.6□□□□□ -0.23
CLN8-202ENST00000517514 GGNBP2Q9H3C7 697 aa13.6□□□□□ -0.23
CLN8-202ENST00000517514 JCADQ9P266 1359 aa13.59□□□□□ -0.23
CLN8-202ENST00000517514 NPC1L1Q9UHC9 1359 aa13.59□□□□□ -0.23
CLN8-202ENST00000517514 CABLES1Q8TDN4 633 aa13.59□□□□□ -0.23
CLN8-202ENST00000517514 CGNL1Q0VF96 1302 aa13.59□□□□□ -0.23
CLN8-202ENST00000517514 LRP6O75581 1613 aa13.58□□□□□ -0.24
CLN8-202ENST00000517514 NLRP6P59044 892 aa13.58□□□□□ -0.24
CLN8-202ENST00000517514 LMOD2Q6P5Q4 547 aa13.58□□□□□ -0.24
CLN8-202ENST00000517514 ILDR1Q86SU0 546 aaPredicted RBP13.58□□□□□ -0.24
CLN8-202ENST00000517514 KNSTRNQ9Y448 316 aa13.58□□□□□ -0.24
CLN8-202ENST00000517514 MAP2P11137 1827 aaKnown RBP13.57□□□□□ -0.24
CLN8-202ENST00000517514 FBLN1P23142 703 aa13.57□□□□□ -0.24
CLN8-202ENST00000517514 LTN1O94822 1766 aa13.57□□□□□ -0.24
CLN8-202ENST00000517514 COL18A1P39060 1754 aa13.57□□□□□ -0.24
CLN8-202ENST00000517514 NSD2O96028 1365 aa13.57□□□□□ -0.24
CLN8-202ENST00000517514 NLRP13Q86W25 1043 aa13.56□□□□□ -0.24
CLN8-202ENST00000517514 PEAK1Q9H792 1746 aa13.56□□□□□ -0.24
CLN8-202ENST00000517514 PLEKHG5O94827 1062 aa13.55□□□□□ -0.24
CLN8-202ENST00000517514 CC2D1BQ5T0F9 858 aaKnown RBP13.55□□□□□ -0.24
CLN8-202ENST00000517514 RGPD5Q99666 1765 aa13.55□□□□□ -0.24
CLN8-202ENST00000517514 GCP02774 474 aa13.54□□□□□ -0.24
CLN8-202ENST00000517514 LMO7Q8WWI1 1683 aa13.53□□□□□ -0.24
CLN8-202ENST00000517514 COG3Q96JB2 828 aa13.53□□□□□ -0.24
CLN8-202ENST00000517514 PARD3Q8TEW0 1356 aa13.53□□□□□ -0.24
CLN8-202ENST00000517514 SPATA31A6Q5VVP1 1343 aa13.52□□□□□ -0.25
CLN8-202ENST00000517514 PLCH1Q4KWH8 1693 aa13.51□□□□□ -0.25
CLN8-202ENST00000517514 CPDO75976 1380 aa13.51□□□□□ -0.25
CLN8-202ENST00000517514 AATKQ6ZMQ8 1374 aa13.51□□□□□ -0.25
CLN8-202ENST00000517514 CNGB1Q14028 1251 aaPredicted RBP13.51□□□□□ -0.25
CLN8-202ENST00000517514 KIAA0232Q92628 1395 aa13.5□□□□□ -0.25
CLN8-202ENST00000517514 NUTM2BA6NNL0 878 aaPredicted RBP13.5□□□□□ -0.25
CLN8-202ENST00000517514 NUTM2EB1AL46 878 aaPredicted RBP13.5□□□□□ -0.25
CLN8-202ENST00000517514 SOX12O15370 315 aa13.5□□□□□ -0.25
CLN8-202ENST00000517514 ARHGEF25Q86VW2 580 aa13.5□□□□□ -0.25
CLN8-202ENST00000517514 NUTM2AQ8IVF1 878 aaPredicted RBP13.5□□□□□ -0.25
CLN8-202ENST00000517514 COL14A1Q05707 1796 aaKnown RBP13.5□□□□□ -0.25
CLN8-202ENST00000517514 NRAPQ86VF7 1730 aa13.5□□□□□ -0.25
CLN8-202ENST00000517514 SMG6Q86US8 1419 aaKnown RBP13.49□□□□□ -0.25
CLN8-202ENST00000517514 MAP3K19Q56UN5 1328 aa13.49□□□□□ -0.25
CLN8-202ENST00000517514 TNNT2P45379 298 aaPredicted RBP13.49□□□□□ -0.25
CLN8-202ENST00000517514 ZC3H6P61129 1189 aaKnown RBP13.49□□□□□ -0.25
CLN8-202ENST00000517514 RRS1Q15050 365 aaKnown RBP13.49□□□□□ -0.25
CLN8-202ENST00000517514 MORC1Q86VD1 984 aa13.49□□□□□ -0.25
CLN8-202ENST00000517514 POLKQ9UBT6 870 aa13.49□□□□□ -0.25
CLN8-202ENST00000517514 CAMTA1Q9Y6Y1 1673 aa13.48□□□□□ -0.25
CLN8-202ENST00000517514 FAM83GA6ND36 823 aa13.48□□□□□ -0.25
CLN8-202ENST00000517514 KCNH5Q8NCM2 988 aa13.48□□□□□ -0.25
CLN8-202ENST00000517514 PRKRIP1Q9H875 184 aaPredicted RBP13.48□□□□□ -0.25
CLN8-202ENST00000517514 EMILIN1Q9Y6C2 1016 aa13.48□□□□□ -0.25
CLN8-202ENST00000517514 RGPD2P0DJD1 1756 aa13.48□□□□□ -0.25
CLN8-202ENST00000517514 NWD2Q9ULI1 1742 aa13.47□□□□□ -0.25
CLN8-202ENST00000517514 ADAMTS2O95450 1211 aa13.47□□□□□ -0.25
CLN8-202ENST00000517514 CHRNA2Q15822 529 aa13.47□□□□□ -0.25
CLN8-202ENST00000517514 AXIN2Q9Y2T1 843 aa13.47□□□□□ -0.25
CLN8-202ENST00000517514 SLIT2O94813 1529 aa13.46□□□□□ -0.25
CLN8-202ENST00000517514 ABCC6O95255 1503 aa13.46□□□□□ -0.25
CLN8-202ENST00000517514 PPP2R1AP30153 589 aa13.46□□□□□ -0.25
CLN8-202ENST00000517514 COL3A1P02461 1466 aaPredicted RBP13.46□□□□□ -0.25
CLN8-202ENST00000517514 RALBP1Q15311 655 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms