RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 CCDC61Q9Y6R9 512 aa25.16■■□□□ 1.62
DDX41-217ENST00000515562 COL14A1Q05707 1796 aaKnown RBP25.16■■□□□ 1.62
DDX41-217ENST00000515562 SIN3AQ96ST3 1273 aa25.15■■□□□ 1.62
DDX41-217ENST00000515562 VPS72Q15906 364 aa25.14■■□□□ 1.62
DDX41-217ENST00000515562 NRAPQ86VF7 1730 aa25.13■■□□□ 1.61
DDX41-217ENST00000515562 NEUROD1Q13562 356 aa25.12■■□□□ 1.61
DDX41-217ENST00000515562 PLEKHG3A1L390 1219 aa25.11■■□□□ 1.61
DDX41-217ENST00000515562 FAM83GA6ND36 823 aa25.11■■□□□ 1.61
DDX41-217ENST00000515562 PHRF1Q9P1Y6 1649 aaKnown RBP25.11■■□□□ 1.61
DDX41-217ENST00000515562 ACEP12821 1306 aa25.11■■□□□ 1.61
DDX41-217ENST00000515562 SRPK2P78362 688 aaKnown RBP25.1■■□□□ 1.61
DDX41-217ENST00000515562 ROCK2O75116 1388 aaKnown RBP25.09■■□□□ 1.61
DDX41-217ENST00000515562 PPIP5K1Q6PFW1 1433 aa25.09■■□□□ 1.61
DDX41-217ENST00000515562 NBPF8Q3BBV2 869 aa25.08■■□□□ 1.61
DDX41-217ENST00000515562 CCDC9Q9Y3X0 531 aaKnown RBP25.08■■□□□ 1.61
DDX41-217ENST00000515562 EP400Q96L91 3159 aa25.06■■□□□ 1.6
DDX41-217ENST00000515562 BTG4Q9NY30 223 aa25.06■■□□□ 1.6
DDX41-217ENST00000515562 PRDM11Q9NQV5 511 aa25.05■■□□□ 1.6
DDX41-217ENST00000515562 BRWD3Q6RI45 1802 aa25.05■■□□□ 1.6
DDX41-217ENST00000515562 CCDC125Q86Z20 511 aa25.03■■□□□ 1.6
DDX41-217ENST00000515562 CABP2Q9NPB3 220 aa25.03■■□□□ 1.6
DDX41-217ENST00000515562 BRD4O60885 1362 aaPredicted RBP25.03■■□□□ 1.6
DDX41-217ENST00000515562 ONECUT3O60422 494 aaPredicted RBP25.02■■□□□ 1.6
DDX41-217ENST00000515562 SEPT12Q8IYM1 358 aa25.02■■□□□ 1.6
DDX41-217ENST00000515562 EVC2Q86UK5 1308 aa25.02■■□□□ 1.6
DDX41-217ENST00000515562 NRKQ7Z2Y5 1582 aa25.01■■□□□ 1.59
DDX41-217ENST00000515562 KIAA0232Q92628 1395 aa25.01■■□□□ 1.59
DDX41-217ENST00000515562 ABTB2Q8N961 1025 aa24.99■■□□□ 1.59
DDX41-217ENST00000515562 NUTM2GQ5VZR2 741 aa24.98■■□□□ 1.59
DDX41-217ENST00000515562 USP6P35125 1406 aa24.97■■□□□ 1.59
DDX41-217ENST00000515562 BLMP54132 1417 aaPredicted RBP24.97■■□□□ 1.59
DDX41-217ENST00000515562 TONSLQ96HA7 1378 aa24.97■■□□□ 1.59
DDX41-217ENST00000515562 USP19O94966 1318 aa24.97■■□□□ 1.59
DDX41-217ENST00000515562 TRIM26Q12899 539 aaPredicted RBP24.96■■□□□ 1.59
DDX41-217ENST00000515562 SPATA31A5Q5VU36 1347 aa24.95■■□□□ 1.58
DDX41-217ENST00000515562 SPATA31A7Q8IWB4 1347 aa24.95■■□□□ 1.58
DDX41-217ENST00000515562 A0A0G2JS52 829 aa24.95■■□□□ 1.58
DDX41-217ENST00000515562 MYT1Q01538 1121 aa24.95■■□□□ 1.58
DDX41-217ENST00000515562 KRT27Q7Z3Y8 459 aa24.95■■□□□ 1.58
DDX41-217ENST00000515562 CABP1Q9NZU7 370 aa24.95■■□□□ 1.58
DDX41-217ENST00000515562 CPDO75976 1380 aa24.94■■□□□ 1.58
DDX41-217ENST00000515562 SBNO2Q9Y2G9 1366 aa24.94■■□□□ 1.58
DDX41-217ENST00000515562 FAM98CQ17RN3 349 aaKnown RBP24.94■■□□□ 1.58
DDX41-217ENST00000515562 NLRP13Q86W25 1043 aa24.94■■□□□ 1.58
DDX41-217ENST00000515562 ZC3H6P61129 1189 aaKnown RBP24.93■■□□□ 1.58
DDX41-217ENST00000515562 THSD7AQ9UPZ6 1657 aa24.93■■□□□ 1.58
DDX41-217ENST00000515562 CHRNA2Q15822 529 aa24.92■■□□□ 1.58
DDX41-217ENST00000515562 LMO7Q8WWI1 1683 aa24.91■■□□□ 1.58
DDX41-217ENST00000515562 CARD11Q9BXL7 1154 aa24.9■■□□□ 1.58
DDX41-217ENST00000515562 AKAP12Q02952 1782 aa24.9■■□□□ 1.58
DDX41-217ENST00000515562 SSH2Q76I76 1423 aa24.89■■□□□ 1.58
DDX41-217ENST00000515562 PIK3C2AO00443 1686 aa24.89■■□□□ 1.58
DDX41-217ENST00000515562 SPATA31A1Q5TZJ5 1347 aa24.88■■□□□ 1.57
DDX41-217ENST00000515562 SLIT3O75094 1523 aa24.88■■□□□ 1.57
DDX41-217ENST00000515562 SF3B2Q13435 895 aaKnown RBP24.88■■□□□ 1.57
DDX41-217ENST00000515562 STRN4Q9NRL3 753 aa24.88■■□□□ 1.57
DDX41-217ENST00000515562 GCP02774 474 aa24.87■■□□□ 1.57
DDX41-217ENST00000515562 CAMTA1Q9Y6Y1 1673 aa24.86■■□□□ 1.57
DDX41-217ENST00000515562 NLRP6P59044 892 aa24.85■■□□□ 1.57
DDX41-217ENST00000515562 ZNF692Q9BU19 519 aaPredicted RBP24.85■■□□□ 1.57
DDX41-217ENST00000515562 EVA1CP58658 441 aa24.84■■□□□ 1.57
DDX41-217ENST00000515562 ZRANB1Q9UGI0 708 aa24.83■■□□□ 1.57
DDX41-217ENST00000515562 CPSF1Q10570 1443 aaKnown RBP24.83■■□□□ 1.57
DDX41-217ENST00000515562 MON2Q7Z3U7 1717 aa24.82■■□□□ 1.56
DDX41-217ENST00000515562 COL5A2P05997 1499 aaPredicted RBP24.82■■□□□ 1.56
DDX41-217ENST00000515562 TTC21AQ8NDW8 1320 aa24.82■■□□□ 1.56
DDX41-217ENST00000515562 RGPD1P0DJD0 1748 aa24.81■■□□□ 1.56
DDX41-217ENST00000515562 TTC21BQ7Z4L5 1316 aa24.8■■□□□ 1.56
DDX41-217ENST00000515562 KTN1Q86UP2 1357 aaKnown RBP24.8■■□□□ 1.56
DDX41-217ENST00000515562 BARGINQ6ZT62 677 aa24.79■■□□□ 1.56
DDX41-217ENST00000515562 AATKQ6ZMQ8 1374 aa24.79■■□□□ 1.56
DDX41-217ENST00000515562 LARP1Q6PKG0 1096 aaKnown RBP24.78■■□□□ 1.56
DDX41-217ENST00000515562 DEFB132Q7Z7B7 95 aa24.78■■□□□ 1.56
DDX41-217ENST00000515562 USP35Q9P2H5 1018 aa24.78■■□□□ 1.56
DDX41-217ENST00000515562 THRAP3Q9Y2W1 955 aaKnown RBP24.76■■□□□ 1.55
DDX41-217ENST00000515562 BAG6P46379 1132 aa24.75■■□□□ 1.55
DDX41-217ENST00000515562 TCP11L2Q8N4U5 519 aa24.75■■□□□ 1.55
DDX41-217ENST00000515562 KCNH5Q8NCM2 988 aa24.75■■□□□ 1.55
DDX41-217ENST00000515562 CRB1P82279 1406 aa24.75■■□□□ 1.55
DDX41-217ENST00000515562 TNS1Q9HBL0 1735 aaKnown RBP24.74■■□□□ 1.55
DDX41-217ENST00000515562 COL18A1P39060 1754 aa24.74■■□□□ 1.55
DDX41-217ENST00000515562 USP54Q70EL1 1684 aa24.73■■□□□ 1.55
DDX41-217ENST00000515562 ZBTB7CA1YPR0 619 aa24.73■■□□□ 1.55
DDX41-217ENST00000515562 FAM182BQ5T319 152 aa24.73■■□□□ 1.55
DDX41-217ENST00000515562 PARP4Q9UKK3 1724 aaKnown RBP24.72■■□□□ 1.55
DDX41-217ENST00000515562 CD163L1Q9NR16 1453 aa24.72■■□□□ 1.55
DDX41-217ENST00000515562 PUS7Q96PZ0 661 aaKnown RBP24.72■■□□□ 1.55
DDX41-217ENST00000515562 NFAT5O94916 1531 aa24.71■■□□□ 1.55
DDX41-217ENST00000515562 ABCC6O95255 1503 aa24.71■■□□□ 1.55
DDX41-217ENST00000515562 DISP2A7MBM2 1401 aa24.71■■□□□ 1.55
DDX41-217ENST00000515562 FAM196AQ6ZSG2 479 aa24.71■■□□□ 1.55
DDX41-217ENST00000515562 TMC1Q8TDI8 760 aa24.7■■□□□ 1.54
DDX41-217ENST00000515562 SLC24A1O60721 1099 aa24.69■■□□□ 1.54
DDX41-217ENST00000515562 PDE3BQ13370 1112 aa24.69■■□□□ 1.54
DDX41-217ENST00000515562 HDGFL2Q7Z4V5 671 aaPredicted RBP24.69■■□□□ 1.54
DDX41-217ENST00000515562 NINLQ9Y2I6 1382 aa24.68■■□□□ 1.54
DDX41-217ENST00000515562 ARHGEF25Q86VW2 580 aa24.68■■□□□ 1.54
DDX41-217ENST00000515562 EDC4Q6P2E9 1401 aaKnown RBP24.68■■□□□ 1.54
DDX41-217ENST00000515562 USP31Q70CQ4 1352 aa24.67■■□□□ 1.54
DDX41-217ENST00000515562 TERF2IPQ9NYB0 399 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms