RNA–Protein interactions for RNA: ENST00000515527.1

SMAD1-216, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 632 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-216ENST00000515527 SPATA31A1Q5TZJ5 1347 aa20.79■□□□□ 0.92
SMAD1-216ENST00000515527 BCL11BQ9C0K0 894 aaPredicted RBP20.79■□□□□ 0.92
SMAD1-216ENST00000515527 SBNO1A3KN83 1393 aa20.78■□□□□ 0.92
SMAD1-216ENST00000515527 COL13A1Q5TAT6 717 aaPredicted RBP20.78■□□□□ 0.92
SMAD1-216ENST00000515527 ARXQ96QS3 562 aa20.76■□□□□ 0.91
SMAD1-216ENST00000515527 GOLGB1Q14789 3259 aaKnown RBP20.76■□□□□ 0.91
SMAD1-216ENST00000515527 TNS4Q8IZW8 715 aa20.75■□□□□ 0.91
SMAD1-216ENST00000515527 FMN2Q9NZ56 1722 aa20.75■□□□□ 0.91
SMAD1-216ENST00000515527 MTFR1LQ9H019 292 aa20.74■□□□□ 0.91
SMAD1-216ENST00000515527 USP35Q9P2H5 1018 aa20.74■□□□□ 0.91
SMAD1-216ENST00000515527 PHF8Q9UPP1 1060 aa20.74■□□□□ 0.91
SMAD1-216ENST00000515527 RGPD3A6NKT7 1758 aaPredicted RBP20.74■□□□□ 0.91
SMAD1-216ENST00000515527 RGPD4Q7Z3J3 1758 aa20.74■□□□□ 0.91
SMAD1-216ENST00000515527 GPBP1L1Q9HC44 474 aaPredicted RBP20.73■□□□□ 0.91
SMAD1-216ENST00000515527 SGIP1Q9BQI5 828 aa20.72■□□□□ 0.91
SMAD1-216ENST00000515527 STRN4Q9NRL3 753 aa20.72■□□□□ 0.91
SMAD1-216ENST00000515527 RGPD8O14715 1765 aaPredicted RBP20.72■□□□□ 0.91
SMAD1-216ENST00000515527 MAP3K5Q99683 1374 aa20.72■□□□□ 0.91
SMAD1-216ENST00000515527 WAPLQ7Z5K2 1190 aa20.71■□□□□ 0.91
SMAD1-216ENST00000515527 PRDM11Q9NQV5 511 aa20.71■□□□□ 0.91
SMAD1-216ENST00000515527 PCDH10Q9P2E7 1040 aa20.71■□□□□ 0.91
SMAD1-216ENST00000515527 ATP10DQ9P241 1426 aa20.7■□□□□ 0.9
SMAD1-216ENST00000515527 PLSCR1O15162 318 aa20.7■□□□□ 0.9
SMAD1-216ENST00000515527 VGFO15240 615 aaPredicted RBP20.7■□□□□ 0.9
SMAD1-216ENST00000515527 TECPR2O15040 1411 aa20.7■□□□□ 0.9
SMAD1-216ENST00000515527 STK32BQ9NY57 414 aa20.69■□□□□ 0.9
SMAD1-216ENST00000515527 KLHL34Q8N239 644 aa20.68■□□□□ 0.9
SMAD1-216ENST00000515527 STK26Q9P289 416 aa20.66■□□□□ 0.9
SMAD1-216ENST00000515527 BARGINQ6ZT62 677 aa20.65■□□□□ 0.9
SMAD1-216ENST00000515527 NRXN1Q9ULB1 1477 aa20.64■□□□□ 0.89
SMAD1-216ENST00000515527 NUP155O75694 1391 aa20.64■□□□□ 0.89
SMAD1-216ENST00000515527 C11orf95C9JLR9 678 aaPredicted RBP20.64■□□□□ 0.89
SMAD1-216ENST00000515527 APLP1P51693 650 aa20.64■□□□□ 0.89
SMAD1-216ENST00000515527 ZNF526Q8TF50 670 aaPredicted RBP20.64■□□□□ 0.89
SMAD1-216ENST00000515527 KIF1BO60333 1816 aa20.63■□□□□ 0.89
SMAD1-216ENST00000515527 SLC15A2Q16348 729 aa20.63■□□□□ 0.89
SMAD1-216ENST00000515527 CLTCL1P53675 1640 aa20.61■□□□□ 0.89
SMAD1-216ENST00000515527 DNAJC5GQ8N7S2 189 aa20.61■□□□□ 0.89
SMAD1-216ENST00000515527 CHRNA2Q15822 529 aa20.6■□□□□ 0.89
SMAD1-216ENST00000515527 PROM2Q8N271 834 aa20.6■□□□□ 0.89
SMAD1-216ENST00000515527 IFT172Q9UG01 1749 aa20.6■□□□□ 0.89
SMAD1-216ENST00000515527 SBF2Q86WG5 1849 aa20.6■□□□□ 0.89
SMAD1-216ENST00000515527 PLEKHH1Q9ULM0 1364 aa20.59■□□□□ 0.89
SMAD1-216ENST00000515527 GRIN3BO60391 1043 aa20.59■□□□□ 0.89
SMAD1-216ENST00000515527 EVA1CP58658 441 aa20.59■□□□□ 0.89
SMAD1-216ENST00000515527 PMFBP1Q8TBY8 1022 aa20.59■□□□□ 0.89
SMAD1-216ENST00000515527 OVOS2A0A0G2JMS6 1433 aa20.58■□□□□ 0.88
SMAD1-216ENST00000515527 OVOS2A0A0J9YW53 1432 aa20.58■□□□□ 0.88
SMAD1-216ENST00000515527 OVOS2Q6IE36 1432 aa20.58■□□□□ 0.88
SMAD1-216ENST00000515527 TCP11L2Q8N4U5 519 aa20.57■□□□□ 0.88
SMAD1-216ENST00000515527 ALS2Q96Q42 1657 aa20.57■□□□□ 0.88
SMAD1-216ENST00000515527 TRPM3Q9HCF6 1732 aaPredicted RBP20.56■□□□□ 0.88
SMAD1-216ENST00000515527 KIAA0232Q92628 1395 aa20.56■□□□□ 0.88
SMAD1-216ENST00000515527 VPS8Q8N3P4 1428 aa20.55■□□□□ 0.88
SMAD1-216ENST00000515527 CRYBG1Q9Y4K1 1723 aa20.54■□□□□ 0.88
SMAD1-216ENST00000515527 FAM50AQ14320 339 aaKnown RBP20.54■□□□□ 0.88
SMAD1-216ENST00000515527 PTF1AQ7RTS3 328 aa20.54■□□□□ 0.88
SMAD1-216ENST00000515527 TXNRD1Q16881 649 aa20.53■□□□□ 0.88
SMAD1-216ENST00000515527 SSH2Q76I76 1423 aa20.53■□□□□ 0.88
SMAD1-216ENST00000515527 YBX3P16989 372 aaKnown RBP eCLIP20.52■□□□□ 0.88
SMAD1-216ENST00000515527 PEAK1Q9H792 1746 aa20.52■□□□□ 0.88
SMAD1-216ENST00000515527 PARP4Q9UKK3 1724 aaKnown RBP20.52■□□□□ 0.88
SMAD1-216ENST00000515527 GPRASP1Q5JY77 1395 aa20.51■□□□□ 0.87
SMAD1-216ENST00000515527 NLGN2Q8NFZ4 835 aa20.51■□□□□ 0.87
SMAD1-216ENST00000515527 LARP1Q6PKG0 1096 aaKnown RBP20.5■□□□□ 0.87
SMAD1-216ENST00000515527 ZC3H6P61129 1189 aaKnown RBP20.49■□□□□ 0.87
SMAD1-216ENST00000515527 WWC3Q9ULE0 1092 aa20.49■□□□□ 0.87
SMAD1-216ENST00000515527 KNDC1Q76NI1 1749 aa20.48■□□□□ 0.87
SMAD1-216ENST00000515527 PAK3O75914 559 aaPredicted RBP20.48■□□□□ 0.87
SMAD1-216ENST00000515527 POLD1P28340 1107 aa20.48■□□□□ 0.87
SMAD1-216ENST00000515527 THRAP3Q9Y2W1 955 aaKnown RBP20.48■□□□□ 0.87
SMAD1-216ENST00000515527 RPGRIP1LQ68CZ1 1315 aa20.48■□□□□ 0.87
SMAD1-216ENST00000515527 DHX57Q6P158 1386 aaKnown RBP20.47■□□□□ 0.87
SMAD1-216ENST00000515527 ABCC11Q96J66 1382 aa20.47■□□□□ 0.87
SMAD1-216ENST00000515527 PPLO60437 1756 aa20.47■□□□□ 0.87
SMAD1-216ENST00000515527 KIF3CO14782 793 aa20.45■□□□□ 0.86
SMAD1-216ENST00000515527 ADCY9O60503 1353 aa20.45■□□□□ 0.86
SMAD1-216ENST00000515527 TMEM132EQ6IEE7 984 aa20.44■□□□□ 0.86
SMAD1-216ENST00000515527 ATP7BP35670 1465 aa20.43■□□□□ 0.86
SMAD1-216ENST00000515527 JMYQ8N9B5 988 aa20.43■□□□□ 0.86
SMAD1-216ENST00000515527 KLRG1Q96E93 195 aa20.43■□□□□ 0.86
SMAD1-216ENST00000515527 ACIN1Q9UKV3 1341 aaKnown RBP20.43■□□□□ 0.86
SMAD1-216ENST00000515527 AATKQ6ZMQ8 1374 aa20.43■□□□□ 0.86
SMAD1-216ENST00000515527 TOPAZ1Q8N9V7 1692 aa20.42■□□□□ 0.86
SMAD1-216ENST00000515527 WDR90Q96KV7 1748 aa20.42■□□□□ 0.86
SMAD1-216ENST00000515527 DDB1Q16531 1140 aa20.41■□□□□ 0.86
SMAD1-216ENST00000515527 PHRF1Q9P1Y6 1649 aaKnown RBP20.41■□□□□ 0.86
SMAD1-216ENST00000515527 PCNTO95613 3336 aa20.4■□□□□ 0.86
SMAD1-216ENST00000515527 ANKARQ7Z5J8 1434 aa20.38■□□□□ 0.85
SMAD1-216ENST00000515527 SAFB2Q14151 953 aaKnown RBP eCLIP20.38■□□□□ 0.85
SMAD1-216ENST00000515527 LRRC37A3O60309 1634 aa20.38■□□□□ 0.85
SMAD1-216ENST00000515527 APLP2Q06481 763 aa20.37■□□□□ 0.85
SMAD1-216ENST00000515527 ADGRF5Q8IZF2 1346 aa20.36■□□□□ 0.85
SMAD1-216ENST00000515527 HTRA3P83110 453 aa20.36■□□□□ 0.85
SMAD1-216ENST00000515527 SLC16A10Q8TF71 515 aa20.36■□□□□ 0.85
SMAD1-216ENST00000515527 YTHDC2Q9H6S0 1430 aaKnown RBP20.36■□□□□ 0.85
SMAD1-216ENST00000515527 TOMM70O94826 608 aa20.35■□□□□ 0.85
SMAD1-216ENST00000515527 NGDNQ8NEJ9 315 aaKnown RBP20.35■□□□□ 0.85
SMAD1-216ENST00000515527 AKAP12Q02952 1782 aa20.34■□□□□ 0.85
SMAD1-216ENST00000515527 NUTM2GQ5VZR2 741 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms