RNA–Protein interactions for RNA: ENST00000515494.5

CDK18-222, Transcript of cyclin dependent kinase 18, human

TSL 1 (best)

Gene CDK18, Length 3,756 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK18-222	ENST00000515494	SETD1B	Q9UPS6	1966 aa	Known RBP	13.82	□□□□□ -0.2
CDK18-222	ENST00000515494	CD163L1	Q9NR16	1453 aa		13.82	□□□□□ -0.2
CDK18-222	ENST00000515494	GOLGA2	Q08379	1002 aa		13.82	□□□□□ -0.2
CDK18-222	ENST00000515494	EXOC6	Q8TAG9	804 aa		13.81	□□□□□ -0.2
CDK18-222	ENST00000515494	DLC1	Q96QB1	1528 aa		13.81	□□□□□ -0.2
CDK18-222	ENST00000515494	DUSP27	Q5VZP5	1158 aa		13.81	□□□□□ -0.2
CDK18-222	ENST00000515494	ZNF521	Q96K83	1311 aa		13.81	□□□□□ -0.2
CDK18-222	ENST00000515494	RTL5	Q5HYW3	569 aa	Predicted RBP	13.8	□□□□□ -0.2
CDK18-222	ENST00000515494	MED14	O60244	1454 aa		13.8	□□□□□ -0.2
CDK18-222	ENST00000515494	FAM135B	Q49AJ0	1406 aa		13.8	□□□□□ -0.2
CDK18-222	ENST00000515494	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.79	□□□□□ -0.2
CDK18-222	ENST00000515494	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
CDK18-222	ENST00000515494	PKNOX2	Q96KN3	472 aa		13.79	□□□□□ -0.2
CDK18-222	ENST00000515494	CFAP53	Q96M91	514 aa		13.79	□□□□□ -0.2
CDK18-222	ENST00000515494	KDM4F	A0A1W2PPD8	638 aa		13.79	□□□□□ -0.2
CDK18-222	ENST00000515494	TECPR2	O15040	1411 aa		13.79	□□□□□ -0.2
CDK18-222	ENST00000515494	U2SURP	O15042	1029 aa	Known RBP	13.78	□□□□□ -0.2
CDK18-222	ENST00000515494	NINL	Q9Y2I6	1382 aa		13.78	□□□□□ -0.2
CDK18-222	ENST00000515494	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.78	□□□□□ -0.2
CDK18-222	ENST00000515494	ACE	P12821	1306 aa		13.78	□□□□□ -0.2
CDK18-222	ENST00000515494	SIRT1	Q96EB6	747 aa		13.78	□□□□□ -0.2
CDK18-222	ENST00000515494	SLFN5	Q08AF3	891 aa		13.77	□□□□□ -0.2
CDK18-222	ENST00000515494	NUTM2G	Q5VZR2	741 aa		13.77	□□□□□ -0.2
CDK18-222	ENST00000515494	TCP11L2	Q8N4U5	519 aa		13.77	□□□□□ -0.2
CDK18-222	ENST00000515494	NGDN	Q8NEJ9	315 aa	Known RBP	13.77	□□□□□ -0.2
CDK18-222	ENST00000515494	NSD2	O96028	1365 aa		13.77	□□□□□ -0.21
CDK18-222	ENST00000515494	C20orf194	Q5TEA3	1177 aa		13.77	□□□□□ -0.21
CDK18-222	ENST00000515494	USP32	Q8NFA0	1604 aa		13.76	□□□□□ -0.21
CDK18-222	ENST00000515494	CPS1	P31327	1500 aa		13.76	□□□□□ -0.21
CDK18-222	ENST00000515494	WWC1	Q8IX03	1113 aa		13.75	□□□□□ -0.21
CDK18-222	ENST00000515494	SHPRH	Q149N8	1683 aa		13.75	□□□□□ -0.21
CDK18-222	ENST00000515494	RRS1	Q15050	365 aa	Known RBP	13.75	□□□□□ -0.21
CDK18-222	ENST00000515494	RUNDC1	Q96C34	613 aa		13.75	□□□□□ -0.21
CDK18-222	ENST00000515494	NPHP4	O75161	1426 aa	Predicted RBP	13.75	□□□□□ -0.21
CDK18-222	ENST00000515494	EMILIN1	Q9Y6C2	1016 aa		13.74	□□□□□ -0.21
CDK18-222	ENST00000515494	ATP7B	P35670	1465 aa		13.74	□□□□□ -0.21
CDK18-222	ENST00000515494	PAK3	O75914	559 aa	Predicted RBP	13.74	□□□□□ -0.21
CDK18-222	ENST00000515494	PROSER2	Q86WR7	435 aa	Predicted RBP	13.74	□□□□□ -0.21
CDK18-222	ENST00000515494	XPC	Q01831	940 aa	Predicted RBP	13.73	□□□□□ -0.21
CDK18-222	ENST00000515494	CRBN	Q96SW2	442 aa		13.73	□□□□□ -0.21
CDK18-222	ENST00000515494	KNDC1	Q76NI1	1749 aa		13.72	□□□□□ -0.21
CDK18-222	ENST00000515494	COG3	Q96JB2	828 aa		13.72	□□□□□ -0.21
CDK18-222	ENST00000515494	BCAR3	O75815	825 aa		13.71	□□□□□ -0.21
CDK18-222	ENST00000515494	TRMT2A	Q8IZ69	625 aa	Known RBP	13.71	□□□□□ -0.21
CDK18-222	ENST00000515494	ESCO1	Q5FWF5	840 aa		13.71	□□□□□ -0.21
CDK18-222	ENST00000515494		E9PSI1	815 aa		13.71	□□□□□ -0.22
CDK18-222	ENST00000515494	POLK	Q9UBT6	870 aa		13.7	□□□□□ -0.22
CDK18-222	ENST00000515494	TTC21B	Q7Z4L5	1316 aa		13.7	□□□□□ -0.22
CDK18-222	ENST00000515494	CPSF1	Q10570	1443 aa	Known RBP	13.7	□□□□□ -0.22
CDK18-222	ENST00000515494	NKTR	P30414	1462 aa	Known RBP	13.7	□□□□□ -0.22
CDK18-222	ENST00000515494	PTCH1	Q13635	1447 aa		13.69	□□□□□ -0.22
CDK18-222	ENST00000515494	DIAPH1	O60610	1272 aa	Known RBP	13.69	□□□□□ -0.22
CDK18-222	ENST00000515494	ZNF692	Q9BU19	519 aa	Predicted RBP	13.69	□□□□□ -0.22
CDK18-222	ENST00000515494	NOP58	Q9Y2X3	529 aa	Known RBP	13.69	□□□□□ -0.22
CDK18-222	ENST00000515494	RGPD8	O14715	1765 aa	Predicted RBP	13.69	□□□□□ -0.22
CDK18-222	ENST00000515494	ZNF142	P52746	1687 aa	Predicted RBP	13.69	□□□□□ -0.22
CDK18-222	ENST00000515494	LMOD2	Q6P5Q4	547 aa		13.68	□□□□□ -0.22
CDK18-222	ENST00000515494	ORAI2	Q96SN7	254 aa		13.68	□□□□□ -0.22
CDK18-222	ENST00000515494	PLEKHG3	A1L390	1219 aa		13.68	□□□□□ -0.22
CDK18-222	ENST00000515494	HMOX1	P09601	288 aa		13.68	□□□□□ -0.22
CDK18-222	ENST00000515494	EDC4	Q6P2E9	1401 aa	Known RBP	13.68	□□□□□ -0.22
CDK18-222	ENST00000515494	ZBTB7C	A1YPR0	619 aa		13.68	□□□□□ -0.22
CDK18-222	ENST00000515494	DIP2A	Q14689	1571 aa		13.67	□□□□□ -0.22
CDK18-222	ENST00000515494	FOXO3	O43524	673 aa		13.66	□□□□□ -0.22
CDK18-222	ENST00000515494	SKAP1	Q86WV1	359 aa		13.66	□□□□□ -0.22
CDK18-222	ENST00000515494	PLEKHF1	Q96S99	279 aa		13.66	□□□□□ -0.22
CDK18-222	ENST00000515494	PIK3R4	Q99570	1358 aa		13.66	□□□□□ -0.22
CDK18-222	ENST00000515494	COL3A1	P02461	1466 aa	Predicted RBP	13.66	□□□□□ -0.22
CDK18-222	ENST00000515494	IQSEC2	Q5JU85	1478 aa		13.66	□□□□□ -0.22
CDK18-222	ENST00000515494	XRN1	Q8IZH2	1706 aa	Known RBP	13.66	□□□□□ -0.22
CDK18-222	ENST00000515494	NLRP6	P59044	892 aa		13.66	□□□□□ -0.22
CDK18-222	ENST00000515494	BCL2L13	Q9BXK5	485 aa		13.66	□□□□□ -0.22
CDK18-222	ENST00000515494	PHF8	Q9UPP1	1060 aa		13.66	□□□□□ -0.22
CDK18-222	ENST00000515494	CDC42BPG	Q6DT37	1551 aa		13.65	□□□□□ -0.22
CDK18-222	ENST00000515494	DDX17	Q92841	729 aa	Known RBP	13.65	□□□□□ -0.22
CDK18-222	ENST00000515494	PHF23	Q9BUL5	403 aa	Predicted RBP	13.65	□□□□□ -0.22
CDK18-222	ENST00000515494	MAPK8IP3	Q9UPT6	1336 aa		13.65	□□□□□ -0.22
CDK18-222	ENST00000515494	NGEF	Q8N5V2	710 aa		13.65	□□□□□ -0.23
CDK18-222	ENST00000515494	TSR2	Q969E8	191 aa	Known RBP	13.65	□□□□□ -0.23
CDK18-222	ENST00000515494	TMPO	P42166	694 aa	Known RBP	13.64	□□□□□ -0.23
CDK18-222	ENST00000515494	ABTB2	Q8N961	1025 aa		13.64	□□□□□ -0.23
CDK18-222	ENST00000515494	KIF20B	Q96Q89	1820 aa		13.64	□□□□□ -0.23
CDK18-222	ENST00000515494	USP6	P35125	1406 aa		13.64	□□□□□ -0.23
CDK18-222	ENST00000515494	CHD2	O14647	1828 aa	Known RBP	13.64	□□□□□ -0.23
CDK18-222	ENST00000515494	PSME1	Q06323	249 aa		13.63	□□□□□ -0.23
CDK18-222	ENST00000515494	ANKRD26	Q9UPS8	1709 aa		13.63	□□□□□ -0.23
CDK18-222	ENST00000515494	PNPLA6	Q8IY17	1366 aa		13.63	□□□□□ -0.23
CDK18-222	ENST00000515494	FRAT1	Q92837	279 aa	Predicted RBP	13.63	□□□□□ -0.23
CDK18-222	ENST00000515494	PRKAR2B	P31323	418 aa		13.62	□□□□□ -0.23
CDK18-222	ENST00000515494	RIPK4	P57078	832 aa		13.62	□□□□□ -0.23
CDK18-222	ENST00000515494	TRIM35	Q9UPQ4	493 aa		13.62	□□□□□ -0.23
CDK18-222	ENST00000515494	MAP2	P11137	1827 aa	Known RBP	13.62	□□□□□ -0.23
CDK18-222	ENST00000515494	HSP90AB2P	Q58FF8	381 aa		13.61	□□□□□ -0.23
CDK18-222	ENST00000515494	WDR63	Q8IWG1	891 aa		13.61	□□□□□ -0.23
CDK18-222	ENST00000515494	ADGRB2	O60241	1585 aa		13.61	□□□□□ -0.23
CDK18-222	ENST00000515494	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.61	□□□□□ -0.23
CDK18-222	ENST00000515494	PHACTR3	Q96KR7	559 aa		13.61	□□□□□ -0.23
CDK18-222	ENST00000515494	PODXL2	Q9NZ53	605 aa		13.61	□□□□□ -0.23
CDK18-222	ENST00000515494	ITSN1	Q15811	1721 aa		13.61	□□□□□ -0.23
CDK18-222	ENST00000515494	LTV1	Q96GA3	475 aa	Predicted RBP	13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms