RNA–Protein interactions for RNA: ENST00000515479.5

RUFY3-215, Transcript of RUN and FYVE domain containing 3, human

TSL 2

Gene RUFY3, Length 893 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RUFY3-215	ENST00000515479	KDM4C	Q9H3R0	1056 aa		10.9	□□□□□ -0.66
RUFY3-215	ENST00000515479	POLR3E	Q9NVU0	708 aa		10.9	□□□□□ -0.66
RUFY3-215	ENST00000515479	LILRB3	O75022	631 aa		10.89	□□□□□ -0.67
RUFY3-215	ENST00000515479	ALDH1A1	P00352	501 aa		10.89	□□□□□ -0.67
RUFY3-215	ENST00000515479	MAP10	Q9P2G4	905 aa		10.89	□□□□□ -0.67
RUFY3-215	ENST00000515479	DACH1	Q9UI36	760 aa		10.89	□□□□□ -0.67
RUFY3-215	ENST00000515479	SMCP	P49901	116 aa	Predicted RBP	10.88	□□□□□ -0.67
RUFY3-215	ENST00000515479	ZNF511	Q8NB15	262 aa		10.88	□□□□□ -0.67
RUFY3-215	ENST00000515479	HPS1	Q92902	700 aa		10.87	□□□□□ -0.67
RUFY3-215	ENST00000515479	PER1	O15534	1290 aa	Predicted RBP	10.86	□□□□□ -0.67
RUFY3-215	ENST00000515479	SIAH2	O43255	324 aa		10.86	□□□□□ -0.67
RUFY3-215	ENST00000515479	F12	P00748	615 aa	Predicted RBP	10.86	□□□□□ -0.67
RUFY3-215	ENST00000515479	RTL5	Q5HYW3	569 aa	Predicted RBP	10.86	□□□□□ -0.67
RUFY3-215	ENST00000515479	HELB	Q8NG08	1087 aa	Predicted RBP	10.86	□□□□□ -0.67
RUFY3-215	ENST00000515479	DDRGK1	Q96HY6	314 aa		10.85	□□□□□ -0.67
RUFY3-215	ENST00000515479	FAM117A	Q9C073	453 aa		10.84	□□□□□ -0.67
RUFY3-215	ENST00000515479	WASF2	Q9Y6W5	498 aa		10.84	□□□□□ -0.67
RUFY3-215	ENST00000515479	GMPR2	Q9P2T1	348 aa	Known RBP	10.83	□□□□□ -0.68
RUFY3-215	ENST00000515479	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.83	□□□□□ -0.68
RUFY3-215	ENST00000515479	TLL2	Q9Y6L7	1015 aa		10.83	□□□□□ -0.68
RUFY3-215	ENST00000515479	ZNF775	Q96BV0	537 aa	Predicted RBP	10.82	□□□□□ -0.68
RUFY3-215	ENST00000515479	VARS	P26640	1264 aa	Known RBP	10.81	□□□□□ -0.68
RUFY3-215	ENST00000515479	SH3D19	Q5HYK7	790 aa		10.81	□□□□□ -0.68
RUFY3-215	ENST00000515479	SKIV2L	Q15477	1246 aa	Known RBP	10.8	□□□□□ -0.68
RUFY3-215	ENST00000515479	FOXJ1	Q92949	421 aa		10.79	□□□□□ -0.68
RUFY3-215	ENST00000515479	ATP13A2	Q9NQ11	1180 aa		10.79	□□□□□ -0.68
RUFY3-215	ENST00000515479	PLEKHG3	A1L390	1219 aa		10.78	□□□□□ -0.68
RUFY3-215	ENST00000515479	C11orf95	C9JLR9	678 aa	Predicted RBP	10.78	□□□□□ -0.68
RUFY3-215	ENST00000515479	AGER	Q15109	404 aa		10.78	□□□□□ -0.68
RUFY3-215	ENST00000515479	FAM174A	Q8TBP5	190 aa		10.78	□□□□□ -0.68
RUFY3-215	ENST00000515479	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.77	□□□□□ -0.69
RUFY3-215	ENST00000515479	ARMC2	Q8NEN0	867 aa		10.76	□□□□□ -0.69
RUFY3-215	ENST00000515479	CTDSPL2	Q05D32	466 aa		10.75	□□□□□ -0.69
RUFY3-215	ENST00000515479	NBPF14	Q5TI25	921 aa		10.74	□□□□□ -0.69
RUFY3-215	ENST00000515479	BPHL	Q86WA6	291 aa	Predicted RBP	10.74	□□□□□ -0.69
RUFY3-215	ENST00000515479	MPND	Q8N594	471 aa		10.74	□□□□□ -0.69
RUFY3-215	ENST00000515479	CAPN5	O15484	640 aa	Predicted RBP	10.73	□□□□□ -0.69
RUFY3-215	ENST00000515479	NNT	Q13423	1086 aa		10.73	□□□□□ -0.69
RUFY3-215	ENST00000515479	ARID5B	Q14865	1188 aa		10.73	□□□□□ -0.69
RUFY3-215	ENST00000515479	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.73	□□□□□ -0.69
RUFY3-215	ENST00000515479	SENP2	Q9HC62	589 aa		10.73	□□□□□ -0.69
RUFY3-215	ENST00000515479	NEUROD2	Q15784	382 aa		10.72	□□□□□ -0.69
RUFY3-215	ENST00000515479	C4orf48	Q5BLP8	95 aa		10.72	□□□□□ -0.69
RUFY3-215	ENST00000515479	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.72	□□□□□ -0.69
RUFY3-215	ENST00000515479	LRRN4	Q8WUT4	740 aa		10.71	□□□□□ -0.69
RUFY3-215	ENST00000515479	ADH1C	P00326	375 aa		10.7	□□□□□ -0.7
RUFY3-215	ENST00000515479	BMP1	P13497	986 aa		10.7	□□□□□ -0.7
RUFY3-215	ENST00000515479	PPP2R2D	Q66LE6	453 aa		10.7	□□□□□ -0.7
RUFY3-215	ENST00000515479	TRIM47	Q96LD4	638 aa		10.7	□□□□□ -0.7
RUFY3-215	ENST00000515479	AP1G2	O75843	785 aa		10.69	□□□□□ -0.7
RUFY3-215	ENST00000515479	SNRPB	P14678	240 aa	Known RBP	10.69	□□□□□ -0.7
RUFY3-215	ENST00000515479	KIFC2	Q96AC6	838 aa		10.69	□□□□□ -0.7
RUFY3-215	ENST00000515479	CDK15	Q96Q40	435 aa		10.69	□□□□□ -0.7
RUFY3-215	ENST00000515479	MAGEB6P1	A0A0J9YX57	407 aa		10.68	□□□□□ -0.7
RUFY3-215	ENST00000515479	SH3BP5L	Q7L8J4	393 aa		10.68	□□□□□ -0.7
RUFY3-215	ENST00000515479	WDR4	P57081	412 aa	Known RBP	10.67	□□□□□ -0.7
RUFY3-215	ENST00000515479	SH3RF1	Q7Z6J0	888 aa		10.67	□□□□□ -0.7
RUFY3-215	ENST00000515479	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.67	□□□□□ -0.7
RUFY3-215	ENST00000515479	CARD14	Q9BXL6	1004 aa		10.67	□□□□□ -0.7
RUFY3-215	ENST00000515479	NR6A1	Q15406	480 aa		10.66	□□□□□ -0.7
RUFY3-215	ENST00000515479	TRIM46	Q7Z4K8	759 aa		10.66	□□□□□ -0.7
RUFY3-215	ENST00000515479	C1QTNF2	Q9BXJ5	285 aa		10.66	□□□□□ -0.7
RUFY3-215	ENST00000515479	TIMP2	P16035	220 aa		10.65	□□□□□ -0.7
RUFY3-215	ENST00000515479	PCMTD1	Q96MG8	357 aa	Predicted RBP	10.64	□□□□□ -0.71
RUFY3-215	ENST00000515479	FKBPL	Q9UIM3	349 aa		10.64	□□□□□ -0.71
RUFY3-215	ENST00000515479	FSHR	P23945	695 aa		10.63	□□□□□ -0.71
RUFY3-215	ENST00000515479	NR5A1	Q13285	461 aa		10.63	□□□□□ -0.71
RUFY3-215	ENST00000515479	IL27	Q8NEV9	243 aa		10.63	□□□□□ -0.71
RUFY3-215	ENST00000515479	NR3C2	P08235	984 aa		10.62	□□□□□ -0.71
RUFY3-215	ENST00000515479	USP17L8	P0C7I0	530 aa		10.62	□□□□□ -0.71
RUFY3-215	ENST00000515479	RFC5	P40937	340 aa		10.62	□□□□□ -0.71
RUFY3-215	ENST00000515479	GRM5	P41594	1212 aa		10.62	□□□□□ -0.71
RUFY3-215	ENST00000515479	TPRN	Q4KMQ1	711 aa		10.62	□□□□□ -0.71
RUFY3-215	ENST00000515479	TREML4	Q6UXN2	200 aa		10.62	□□□□□ -0.71
RUFY3-215	ENST00000515479	VASH1	Q7L8A9	365 aa	Predicted RBP	10.62	□□□□□ -0.71
RUFY3-215	ENST00000515479	ARHGAP9	Q9BRR9	750 aa		10.62	□□□□□ -0.71
RUFY3-215	ENST00000515479	GOPC	Q9HD26	462 aa		10.62	□□□□□ -0.71
RUFY3-215	ENST00000515479	ZIC2	O95409	532 aa	Predicted RBP	10.61	□□□□□ -0.71
RUFY3-215	ENST00000515479	BRPF1	P55201	1214 aa	Predicted RBP	10.61	□□□□□ -0.71
RUFY3-215	ENST00000515479	PDXDC2P	Q6P474	469 aa		10.61	□□□□□ -0.71
RUFY3-215	ENST00000515479	TRMT44	Q8IYL2	757 aa	Known RBP	10.61	□□□□□ -0.71
RUFY3-215	ENST00000515479	KLF16	Q9BXK1	252 aa	Predicted RBP	10.61	□□□□□ -0.71
RUFY3-215	ENST00000515479	MAP4K5	Q9Y4K4	846 aa		10.61	□□□□□ -0.71
RUFY3-215	ENST00000515479	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.6	□□□□□ -0.71
RUFY3-215	ENST00000515479	ERFE	Q4G0M1	354 aa		10.6	□□□□□ -0.71
RUFY3-215	ENST00000515479	MRPL14	Q6P1L8	145 aa	Known RBP	10.6	□□□□□ -0.71
RUFY3-215	ENST00000515479	ITPKC	Q96DU7	683 aa		10.6	□□□□□ -0.71
RUFY3-215	ENST00000515479	ZFP42	Q96MM3	310 aa		10.6	□□□□□ -0.71
RUFY3-215	ENST00000515479	ZFAND3	Q9H8U3	227 aa		10.6	□□□□□ -0.71
RUFY3-215	ENST00000515479	EPS8L1	Q8TE68	723 aa		10.59	□□□□□ -0.71
RUFY3-215	ENST00000515479	HMX1	Q9NP08	348 aa	Predicted RBP	10.59	□□□□□ -0.71
RUFY3-215	ENST00000515479	WFS1	O76024	890 aa		10.58	□□□□□ -0.72
RUFY3-215	ENST00000515479	SCARF1	Q14162	830 aa		10.58	□□□□□ -0.72
RUFY3-215	ENST00000515479	SLC10A4	Q96EP9	437 aa		10.58	□□□□□ -0.72
RUFY3-215	ENST00000515479	ZBTB33	Q86T24	672 aa		10.57	□□□□□ -0.72
RUFY3-215	ENST00000515479	PNMA1	Q8ND90	353 aa		10.57	□□□□□ -0.72
RUFY3-215	ENST00000515479	PURB	Q96QR8	312 aa	Known RBP	10.57	□□□□□ -0.72
RUFY3-215	ENST00000515479	NFX1	Q12986	1120 aa	Known RBP	10.56	□□□□□ -0.72
RUFY3-215	ENST00000515479	PTK2	Q05397	1052 aa		10.55	□□□□□ -0.72
RUFY3-215	ENST00000515479	LCE2A	Q5TA79	106 aa	Predicted RBP	10.55	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms