RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CSB-PGBD3P0DP91 1061 aa13.07□□□□□ -0.32
NUP54-215ENST00000514313 PTPRNQ16849 979 aa13.07□□□□□ -0.32
NUP54-215ENST00000514313 STAC3Q96MF2 364 aa13.07□□□□□ -0.32
NUP54-215ENST00000514313 ZBBXA8MT70 800 aa13.06□□□□□ -0.32
NUP54-215ENST00000514313 ANKRD13DQ6ZTN6 518 aa13.05□□□□□ -0.32
NUP54-215ENST00000514313 WNT2BQ93097 391 aa13.05□□□□□ -0.32
NUP54-215ENST00000514313 CARNS1A5YM72 827 aa13.04□□□□□ -0.32
NUP54-215ENST00000514313 CDCA8Q53HL2 280 aa13.04□□□□□ -0.32
NUP54-215ENST00000514313 ATP9BO43861 1147 aa13.03□□□□□ -0.32
NUP54-215ENST00000514313 LCE2DQ5TA82 110 aaPredicted RBP13.03□□□□□ -0.32
NUP54-215ENST00000514313 ZC3H4Q9UPT8 1303 aaKnown RBP13.03□□□□□ -0.32
NUP54-215ENST00000514313 PIK3CDO00329 1044 aa13.01□□□□□ -0.33
NUP54-215ENST00000514313 ATG7O95352 703 aa13.01□□□□□ -0.33
NUP54-215ENST00000514313 CTHP32929 405 aa13.01□□□□□ -0.33
NUP54-215ENST00000514313 MSS51Q4VC12 460 aa13.01□□□□□ -0.33
NUP54-215ENST00000514313 WBP1LQ9NX94 342 aa13.01□□□□□ -0.33
NUP54-215ENST00000514313 NPM2Q86SE8 214 aaKnown RBP13□□□□□ -0.33
NUP54-215ENST00000514313 GZF1Q9H116 711 aaPredicted RBP12.99□□□□□ -0.33
NUP54-215ENST00000514313 PRDM9Q9NQV7 894 aa12.99□□□□□ -0.33
NUP54-215ENST00000514313 DXOO77932 396 aaKnown RBP12.98□□□□□ -0.33
NUP54-215ENST00000514313 CCNYL3P0C7X3 344 aa12.98□□□□□ -0.33
NUP54-215ENST00000514313 RANGAP1P46060 587 aaPredicted RBP12.98□□□□□ -0.33
NUP54-215ENST00000514313 FAM160A2Q8N612 972 aaPredicted RBP12.98□□□□□ -0.33
NUP54-215ENST00000514313 BRD1O95696 1058 aa12.97□□□□□ -0.33
NUP54-215ENST00000514313 SPSB2Q99619 263 aa12.97□□□□□ -0.33
NUP54-215ENST00000514313 NUDT12Q9BQG2 462 aa12.97□□□□□ -0.33
NUP54-215ENST00000514313 TMEM88BA6NKF7 163 aa12.96□□□□□ -0.33
NUP54-215ENST00000514313 COPS2P61201 443 aa12.96□□□□□ -0.33
NUP54-215ENST00000514313 MMP16P51512 607 aa12.95□□□□□ -0.34
NUP54-215ENST00000514313 KCNA1Q09470 495 aa12.95□□□□□ -0.34
NUP54-215ENST00000514313 TMCO4Q5TGY1 634 aa12.95□□□□□ -0.34
NUP54-215ENST00000514313 EVA1BQ9NVM1 165 aa12.95□□□□□ -0.34
NUP54-215ENST00000514313 KCNH2Q12809 1159 aa12.94□□□□□ -0.34
NUP54-215ENST00000514313 KANK4Q5T7N3 995 aaPredicted RBP12.94□□□□□ -0.34
NUP54-215ENST00000514313 NFATC2IPQ8NCF5 419 aa12.94□□□□□ -0.34
NUP54-215ENST00000514313 FAM174AQ8TBP5 190 aa12.94□□□□□ -0.34
NUP54-215ENST00000514313 VRTNQ9H8Y1 702 aa12.94□□□□□ -0.34
NUP54-215ENST00000514313 USP17L3A6NCW0 530 aa12.93□□□□□ -0.34
NUP54-215ENST00000514313 USP17L4A6NCW7 530 aa12.93□□□□□ -0.34
NUP54-215ENST00000514313 PATL2C9JE40 543 aaKnown RBP12.93□□□□□ -0.34
NUP54-215ENST00000514313 TLL1O43897 1013 aa12.93□□□□□ -0.34
NUP54-215ENST00000514313 SKIP12755 728 aa12.93□□□□□ -0.34
NUP54-215ENST00000514313 USP17L2Q6R6M4 530 aa12.93□□□□□ -0.34
NUP54-215ENST00000514313 USP17L1Q7RTZ2 530 aa12.93□□□□□ -0.34
NUP54-215ENST00000514313 OCSTAMPQ9BR26 566 aa12.93□□□□□ -0.34
NUP54-215ENST00000514313 USP17L5A8MUK1 530 aa12.92□□□□□ -0.34
NUP54-215ENST00000514313 THSD4Q6ZMP0 1018 aa12.92□□□□□ -0.34
NUP54-215ENST00000514313 PDXDC2PQ6P474 469 aa12.91□□□□□ -0.34
NUP54-215ENST00000514313 ARMC2Q8NEN0 867 aa12.91□□□□□ -0.34
NUP54-215ENST00000514313 GPKOWQ92917 476 aaPredicted RBP eCLIP12.91□□□□□ -0.34
NUP54-215ENST00000514313 GPSM3Q9Y4H4 160 aa12.91□□□□□ -0.34
NUP54-215ENST00000514313 PTK2Q05397 1052 aa12.9□□□□□ -0.34
NUP54-215ENST00000514313 NBPF14Q5TI25 921 aa12.9□□□□□ -0.34
NUP54-215ENST00000514313 ZMIZ1Q9ULJ6 1067 aa12.9□□□□□ -0.34
NUP54-215ENST00000514313 PLEKHM2Q8IWE5 1019 aa12.89□□□□□ -0.35
NUP54-215ENST00000514313 DEPDC4Q8N2C3 294 aa12.89□□□□□ -0.35
NUP54-215ENST00000514313 PCDHB9Q9Y5E1 797 aa12.88□□□□□ -0.35
NUP54-215ENST00000514313 ADH1BP00325 375 aa12.87□□□□□ -0.35
NUP54-215ENST00000514313 MFAP1P55081 439 aaKnown RBP12.87□□□□□ -0.35
NUP54-215ENST00000514313 ELOAQ14241 798 aaKnown RBP12.87□□□□□ -0.35
NUP54-215ENST00000514313 STK32AQ8WU08 396 aa12.87□□□□□ -0.35
NUP54-215ENST00000514313 CEP126Q9P2H0 1117 aa12.87□□□□□ -0.35
NUP54-215ENST00000514313 ZPR1O75312 459 aa12.86□□□□□ -0.35
NUP54-215ENST00000514313 TMEM164Q5U3C3 297 aa12.86□□□□□ -0.35
NUP54-215ENST00000514313 SLFNL1Q499Z3 407 aa12.85□□□□□ -0.35
NUP54-215ENST00000514313 ADAM32Q8TC27 787 aa12.85□□□□□ -0.35
NUP54-215ENST00000514313 KCTD12Q96CX2 325 aaKnown RBP12.85□□□□□ -0.35
NUP54-215ENST00000514313 UNC93B1Q9H1C4 597 aa12.85□□□□□ -0.35
NUP54-215ENST00000514313 NOVA2Q9UNW9 492 aaKnown RBP12.85□□□□□ -0.35
NUP54-215ENST00000514313 IVNS1ABPQ9Y6Y0 642 aa12.85□□□□□ -0.35
NUP54-215ENST00000514313 RNF135Q8IUD6 432 aa12.84□□□□□ -0.35
NUP54-215ENST00000514313 ZNF592Q92610 1267 aa12.84□□□□□ -0.35
NUP54-215ENST00000514313 ARHGAP9Q9BRR9 750 aa12.84□□□□□ -0.35
NUP54-215ENST00000514313 KRTAP3-3Q9BYR6 98 aa12.84□□□□□ -0.35
NUP54-215ENST00000514313 KRTAP3-2Q9BYR7 98 aa12.84□□□□□ -0.35
NUP54-215ENST00000514313 NCOA4Q13772 614 aa12.83□□□□□ -0.36
NUP54-215ENST00000514313 PHTF2Q8N3S3 785 aa12.83□□□□□ -0.36
NUP54-215ENST00000514313 CCDC24Q8N4L8 307 aa12.83□□□□□ -0.36
NUP54-215ENST00000514313 RGS22Q8NE09 1264 aa12.83□□□□□ -0.36
NUP54-215ENST00000514313 MTRQ99707 1265 aa12.83□□□□□ -0.36
NUP54-215ENST00000514313 FAM196BA6NMK8 535 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 USP17L15C9J2P7 530 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 USP17L10C9JJH3 530 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 USP17L13C9JLJ4 530 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 USP17L12C9JPN9 530 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 USP17L11C9JVI0 530 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 USP17L21D6R901 530 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 USP17L18D6R9N7 530 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 USP17L22D6RA61 530 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 USP17L17D6RBQ6 530 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 USP17L19D6RCP7 530 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 USP17L20D6RJB6 530 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 MCCD1P59942 119 aaPredicted RBP12.82□□□□□ -0.36
NUP54-215ENST00000514313 USP17L24Q0WX57 530 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 CRTC2Q53ET0 693 aaPredicted RBP12.82□□□□□ -0.36
NUP54-215ENST00000514313 PTCRAQ6ISU1 281 aaPredicted RBP12.82□□□□□ -0.36
NUP54-215ENST00000514313 SH3BP5LQ7L8J4 393 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 PLPP7Q8NBV4 271 aa12.82□□□□□ -0.36
NUP54-215ENST00000514313 MKRN1Q9UHC7 482 aaKnown RBP12.82□□□□□ -0.36
NUP54-215ENST00000514313 NYAP1Q6ZVC0 841 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms