RNA–Protein interactions for RNA: ENST00000514110.5

SNHG4-208, Transcript of small nucleolar RNA host gene 4, humanhuman

TSL 1 (best)

Gene SNHG4, Length 679 nt, Biotype retained intron, Subcellular localisation Nucleoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG4-208ENST00000514110 PAK3O75914 559 aaPredicted RBP17.75■□□□□ 0.43
SNHG4-208ENST00000514110 NBPF1Q3BBV0 1214 aa17.75■□□□□ 0.43
SNHG4-208ENST00000514110 CDK19Q9BWU1 502 aa17.75■□□□□ 0.43
SNHG4-208ENST00000514110 BTG4Q9NY30 223 aa17.75■□□□□ 0.43
SNHG4-208ENST00000514110 COL14A1Q05707 1796 aaKnown RBP17.74■□□□□ 0.43
SNHG4-208ENST00000514110 BLMP54132 1417 aaPredicted RBP17.72■□□□□ 0.43
SNHG4-208ENST00000514110 TOPAZ1Q8N9V7 1692 aa17.72■□□□□ 0.43
SNHG4-208ENST00000514110 SRCAPQ6ZRS2 3230 aa17.7■□□□□ 0.42
SNHG4-208ENST00000514110 POLR3AO14802 1390 aaPredicted RBP17.7■□□□□ 0.42
SNHG4-208ENST00000514110 FAM98CQ17RN3 349 aaKnown RBP17.7■□□□□ 0.42
SNHG4-208ENST00000514110 KRT27Q7Z3Y8 459 aa17.7■□□□□ 0.42
SNHG4-208ENST00000514110 ZRANB1Q9UGI0 708 aa17.7■□□□□ 0.42
SNHG4-208ENST00000514110 ACEP12821 1306 aa17.7■□□□□ 0.42
SNHG4-208ENST00000514110 NUTM2GQ5VZR2 741 aa17.69■□□□□ 0.42
SNHG4-208ENST00000514110 CCDC61Q9Y6R9 512 aa17.69■□□□□ 0.42
SNHG4-208ENST00000514110 PHRF1Q9P1Y6 1649 aaKnown RBP17.69■□□□□ 0.42
SNHG4-208ENST00000514110 A0A0G2JS52 829 aa17.68■□□□□ 0.42
SNHG4-208ENST00000514110 MYT1Q01538 1121 aa17.68■□□□□ 0.42
SNHG4-208ENST00000514110 NBPF8Q3BBV2 869 aa17.68■□□□□ 0.42
SNHG4-208ENST00000514110 DEFB132Q7Z7B7 95 aa17.68■□□□□ 0.42
SNHG4-208ENST00000514110 PRDM11Q9NQV5 511 aa17.68■□□□□ 0.42
SNHG4-208ENST00000514110 PLEKHG3A1L390 1219 aa17.67■□□□□ 0.42
SNHG4-208ENST00000514110 SPATA31A5Q5VU36 1347 aa17.67■□□□□ 0.42
SNHG4-208ENST00000514110 SPATA31A7Q8IWB4 1347 aa17.67■□□□□ 0.42
SNHG4-208ENST00000514110 KIAA0232Q92628 1395 aa17.66■□□□□ 0.42
SNHG4-208ENST00000514110 CENPJQ9HC77 1338 aaPredicted RBP17.66■□□□□ 0.42
SNHG4-208ENST00000514110 CHRNA2Q15822 529 aa17.65■□□□□ 0.42
SNHG4-208ENST00000514110 L3MBTL2Q969R5 705 aa17.65■□□□□ 0.42
SNHG4-208ENST00000514110 ZC3H6P61129 1189 aaKnown RBP17.64■□□□□ 0.41
SNHG4-208ENST00000514110 SF3B2Q13435 895 aaKnown RBP17.64■□□□□ 0.41
SNHG4-208ENST00000514110 SRPK2P78362 688 aaKnown RBP17.63■□□□□ 0.41
SNHG4-208ENST00000514110 SIN3AQ96ST3 1273 aa17.63■□□□□ 0.41
SNHG4-208ENST00000514110 CABP2Q9NPB3 220 aa17.63■□□□□ 0.41
SNHG4-208ENST00000514110 QRICH2Q9H0J4 1663 aa17.63■□□□□ 0.41
SNHG4-208ENST00000514110 THSD7AQ9UPZ6 1657 aa17.63■□□□□ 0.41
SNHG4-208ENST00000514110 PPIP5K1Q6PFW1 1433 aa17.63■□□□□ 0.41
SNHG4-208ENST00000514110 FAM182BQ5T319 152 aa17.62■□□□□ 0.41
SNHG4-208ENST00000514110 ABTB2Q8N961 1025 aa17.62■□□□□ 0.41
SNHG4-208ENST00000514110 NRKQ7Z2Y5 1582 aa17.62■□□□□ 0.41
SNHG4-208ENST00000514110 STRN4Q9NRL3 753 aa17.61■□□□□ 0.41
SNHG4-208ENST00000514110 SPATA31A1Q5TZJ5 1347 aa17.61■□□□□ 0.41
SNHG4-208ENST00000514110 TRPM1Q7Z4N2 1603 aa17.6■□□□□ 0.41
SNHG4-208ENST00000514110 USP19O94966 1318 aa17.59■□□□□ 0.41
SNHG4-208ENST00000514110 CPDO75976 1380 aa17.57■□□□□ 0.4
SNHG4-208ENST00000514110 BAG6P46379 1132 aa17.57■□□□□ 0.4
SNHG4-208ENST00000514110 NEUROD1Q13562 356 aa17.57■□□□□ 0.4
SNHG4-208ENST00000514110 CABP1Q9NZU7 370 aa17.57■□□□□ 0.4
SNHG4-208ENST00000514110 LMO7Q8WWI1 1683 aa17.57■□□□□ 0.4
SNHG4-208ENST00000514110 CAMTA1Q9Y6Y1 1673 aa17.57■□□□□ 0.4
SNHG4-208ENST00000514110 SSH2Q76I76 1423 aa17.56■□□□□ 0.4
SNHG4-208ENST00000514110 NLRP13Q86W25 1043 aa17.56■□□□□ 0.4
SNHG4-208ENST00000514110 USP35Q9P2H5 1018 aa17.56■□□□□ 0.4
SNHG4-208ENST00000514110 RGPD1P0DJD0 1748 aa17.55■□□□□ 0.4
SNHG4-208ENST00000514110 GCP02774 474 aa17.55■□□□□ 0.4
SNHG4-208ENST00000514110 EVA1CP58658 441 aa17.55■□□□□ 0.4
SNHG4-208ENST00000514110 USP6P35125 1406 aa17.55■□□□□ 0.4
SNHG4-208ENST00000514110 LARP1Q6PKG0 1096 aaKnown RBP17.54■□□□□ 0.4
SNHG4-208ENST00000514110 BRD4O60885 1362 aaPredicted RBP17.53■□□□□ 0.4
SNHG4-208ENST00000514110 ROCK2O75116 1388 aaKnown RBP17.53■□□□□ 0.4
SNHG4-208ENST00000514110 EVC2Q86UK5 1308 aa17.53■□□□□ 0.4
SNHG4-208ENST00000514110 EN1Q05925 392 aaPredicted RBP17.53■□□□□ 0.4
SNHG4-208ENST00000514110 TNS1Q9HBL0 1735 aaKnown RBP17.52■□□□□ 0.4
SNHG4-208ENST00000514110 BARGINQ6ZT62 677 aa17.52■□□□□ 0.4
SNHG4-208ENST00000514110 SLIT3O75094 1523 aa17.51■□□□□ 0.39
SNHG4-208ENST00000514110 COL5A2P05997 1499 aaPredicted RBP17.5■□□□□ 0.39
SNHG4-208ENST00000514110 DISP2A7MBM2 1401 aa17.5■□□□□ 0.39
SNHG4-208ENST00000514110 PSDA5PKW4 1024 aaPredicted RBP17.5■□□□□ 0.39
SNHG4-208ENST00000514110 NLRP6P59044 892 aa17.5■□□□□ 0.39
SNHG4-208ENST00000514110 FAM196AQ6ZSG2 479 aa17.5■□□□□ 0.39
SNHG4-208ENST00000514110 TCP11L2Q8N4U5 519 aa17.5■□□□□ 0.39
SNHG4-208ENST00000514110 PIK3C2AO00443 1686 aa17.5■□□□□ 0.39
SNHG4-208ENST00000514110 ZBTB7CA1YPR0 619 aa17.49■□□□□ 0.39
SNHG4-208ENST00000514110 TRIM37O94972 964 aa17.49■□□□□ 0.39
SNHG4-208ENST00000514110 PDE3BQ13370 1112 aa17.47■□□□□ 0.39
SNHG4-208ENST00000514110 EZH2Q15910 746 aaKnown RBP17.47■□□□□ 0.39
SNHG4-208ENST00000514110 AKAP12Q02952 1782 aa17.47■□□□□ 0.39
SNHG4-208ENST00000514110 AATKQ6ZMQ8 1374 aa17.46■□□□□ 0.39
SNHG4-208ENST00000514110 THRAP3Q9Y2W1 955 aaKnown RBP17.46■□□□□ 0.39
SNHG4-208ENST00000514110 LRP5O75197 1615 aa17.46■□□□□ 0.39
SNHG4-208ENST00000514110 CRB1P82279 1406 aa17.46■□□□□ 0.39
SNHG4-208ENST00000514110 TTC21BQ7Z4L5 1316 aa17.46■□□□□ 0.38
SNHG4-208ENST00000514110 CAMKK2Q96RR4 588 aa17.45■□□□□ 0.38
SNHG4-208ENST00000514110 ZNF692Q9BU19 519 aaPredicted RBP17.45■□□□□ 0.38
SNHG4-208ENST00000514110 COL18A1P39060 1754 aa17.45■□□□□ 0.38
SNHG4-208ENST00000514110 PARP4Q9UKK3 1724 aaKnown RBP17.44■□□□□ 0.38
SNHG4-208ENST00000514110 CPSF1Q10570 1443 aaKnown RBP17.44■□□□□ 0.38
SNHG4-208ENST00000514110 APBA3O96018 575 aa17.43■□□□□ 0.38
SNHG4-208ENST00000514110 R3HDM1Q15032 1099 aaKnown RBP17.43■□□□□ 0.38
SNHG4-208ENST00000514110 AXIN2Q9Y2T1 843 aa17.43■□□□□ 0.38
SNHG4-208ENST00000514110 ARHGEF25Q86VW2 580 aa17.41■□□□□ 0.38
SNHG4-208ENST00000514110 CARD11Q9BXL7 1154 aa17.41■□□□□ 0.38
SNHG4-208ENST00000514110 TTC21AQ8NDW8 1320 aa17.41■□□□□ 0.38
SNHG4-208ENST00000514110 KTN1Q86UP2 1357 aaKnown RBP17.4■□□□□ 0.38
SNHG4-208ENST00000514110 SBNO2Q9Y2G9 1366 aa17.4■□□□□ 0.38
SNHG4-208ENST00000514110 SOX12O15370 315 aa17.4■□□□□ 0.38
SNHG4-208ENST00000514110 TOM1L2Q6ZVM7 507 aa17.4■□□□□ 0.38
SNHG4-208ENST00000514110 RREB1Q92766 1687 aa17.39■□□□□ 0.37
SNHG4-208ENST00000514110 MON2Q7Z3U7 1717 aa17.39■□□□□ 0.37
SNHG4-208ENST00000514110 NFAT5O94916 1531 aa17.39■□□□□ 0.37
SNHG4-208ENST00000514110 WDR17Q8IZU2 1322 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms