RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 DZIP1LQ8IYY4 767 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-218ENST00000513024 TRERF1Q96PN7 1200 aa10.44□□□□□ -0.74
LIMCH1-218ENST00000513024 PRDM2Q13029 1718 aa10.44□□□□□ -0.74
LIMCH1-218ENST00000513024 RNF20Q5VTR2 975 aa10.44□□□□□ -0.74
LIMCH1-218ENST00000513024 CLASRPQ8N2M8 674 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-218ENST00000513024 DDX11Q96FC9 970 aa10.44□□□□□ -0.74
LIMCH1-218ENST00000513024 TRAK1Q9UPV9 953 aa10.44□□□□□ -0.74
LIMCH1-218ENST00000513024 SYTL4Q96C24 671 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-218ENST00000513024 CCDC7Q96M83 1385 aa10.43□□□□□ -0.74
LIMCH1-218ENST00000513024 TDO2P48775 406 aa10.43□□□□□ -0.74
LIMCH1-218ENST00000513024 LTV1Q96GA3 475 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-218ENST00000513024 MYO6Q9UM54 1294 aa10.43□□□□□ -0.74
LIMCH1-218ENST00000513024 CT47A1Q5JQC4 288 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-218ENST00000513024 PCMTD1Q96MG8 357 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-218ENST00000513024 GPRASP1Q5JY77 1395 aa10.43□□□□□ -0.74
LIMCH1-218ENST00000513024 ABCA10Q8WWZ4 1543 aa10.43□□□□□ -0.74
LIMCH1-218ENST00000513024 KIF21AQ7Z4S6 1674 aa10.43□□□□□ -0.74
LIMCH1-218ENST00000513024 ZKSCAN1P17029 563 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-218ENST00000513024 CNTLNQ9NXG0 1405 aa10.42□□□□□ -0.74
LIMCH1-218ENST00000513024 C11orf95C9JLR9 678 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-218ENST00000513024 PANK1Q8TE04 598 aa10.42□□□□□ -0.74
LIMCH1-218ENST00000513024 MARCH6O60337 910 aa10.42□□□□□ -0.74
LIMCH1-218ENST00000513024 DHX37Q8IY37 1157 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-218ENST00000513024 TOM1O60784 492 aa10.42□□□□□ -0.74
LIMCH1-218ENST00000513024 SMC3Q9UQE7 1217 aa10.41□□□□□ -0.74
LIMCH1-218ENST00000513024 TOPBP1Q92547 1522 aa10.41□□□□□ -0.74
LIMCH1-218ENST00000513024 TMCO5BA8MYB1 307 aa10.41□□□□□ -0.74
LIMCH1-218ENST00000513024 NUTM2FA1L443 756 aa10.41□□□□□ -0.74
LIMCH1-218ENST00000513024 NUTM2BA6NNL0 878 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-218ENST00000513024 NUTM2EB1AL46 878 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-218ENST00000513024 NUTM2AQ8IVF1 878 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-218ENST00000513024 TTLL5Q6EMB2 1281 aa10.41□□□□□ -0.74
LIMCH1-218ENST00000513024 CCAR1Q8IX12 1150 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-218ENST00000513024 MPNDQ8N594 471 aa10.41□□□□□ -0.74
LIMCH1-218ENST00000513024 TRIM5Q9C035 493 aa10.41□□□□□ -0.74
LIMCH1-218ENST00000513024 MNAT1P51948 309 aa10.4□□□□□ -0.74
LIMCH1-218ENST00000513024 WWC1Q8IX03 1113 aa10.4□□□□□ -0.74
LIMCH1-218ENST00000513024 USP47Q96K76 1375 aa10.4□□□□□ -0.74
LIMCH1-218ENST00000513024 NBPF8Q3BBV2 869 aa10.4□□□□□ -0.74
LIMCH1-218ENST00000513024 ZSCAN30Q86W11 494 aa10.4□□□□□ -0.74
LIMCH1-218ENST00000513024 MBD3O95983 291 aa10.4□□□□□ -0.74
LIMCH1-218ENST00000513024 IBSPP21815 317 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-218ENST00000513024 NAP1L1P55209 391 aaKnown RBP10.4□□□□□ -0.75
LIMCH1-218ENST00000513024 RAPGEF4Q8WZA2 1011 aa10.4□□□□□ -0.75
LIMCH1-218ENST00000513024 CFAP43Q8NDM7 1665 aa10.4□□□□□ -0.75
LIMCH1-218ENST00000513024 HNRNPMP52272 730 aaKnown RBP eCLIP10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 HOMEZQ8IX15 550 aa10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 HOOK1Q9UJC3 728 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 SHTN1A0MZ66 631 aa10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 FOSBP53539 338 aa10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 RUFY2Q8WXA3 655 aa10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 RBM33Q96EV2 1170 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 GRPEL1Q9HAV7 217 aa10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 KIF7Q2M1P5 1343 aa10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 INTS3Q68E01 1043 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 PTPN23Q9H3S7 1636 aa10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 LETM1O95202 739 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 DNAAF4Q8WXU2 420 aa10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 NAT10Q9H0A0 1025 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-218ENST00000513024 CPLX1O14810 134 aa10.38□□□□□ -0.75
LIMCH1-218ENST00000513024 AKAP17AQ02040 695 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-218ENST00000513024 VPS53Q5VIR6 699 aa10.38□□□□□ -0.75
LIMCH1-218ENST00000513024 CPLX2Q6PUV4 134 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-218ENST00000513024 CDCA7LQ96GN5 454 aa10.38□□□□□ -0.75
LIMCH1-218ENST00000513024 DHX8Q14562 1220 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-218ENST00000513024 CTR9Q6PD62 1173 aa10.38□□□□□ -0.75
LIMCH1-218ENST00000513024 GOLGA6L10A0A0M3HER8 536 aa10.38□□□□□ -0.75
LIMCH1-218ENST00000513024 PRPF40AO75400 957 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-218ENST00000513024 COG3Q96JB2 828 aa10.38□□□□□ -0.75
LIMCH1-218ENST00000513024 TMCO3Q6UWJ1 677 aa10.37□□□□□ -0.75
LIMCH1-218ENST00000513024 CCDC73Q6ZRK6 1079 aa10.37□□□□□ -0.75
LIMCH1-218ENST00000513024 NECTIN2Q92692 538 aa10.37□□□□□ -0.75
LIMCH1-218ENST00000513024 CCDC102AQ96A19 550 aa10.37□□□□□ -0.75
LIMCH1-218ENST00000513024 DNMBPQ6XZF7 1577 aa10.37□□□□□ -0.75
LIMCH1-218ENST00000513024 NF2P35240 595 aa10.37□□□□□ -0.75
LIMCH1-218ENST00000513024 TEFQ10587 303 aa10.37□□□□□ -0.75
LIMCH1-218ENST00000513024 TXNDC2Q86VQ3 553 aa10.37□□□□□ -0.75
LIMCH1-218ENST00000513024 TSPY26PQ9H489 355 aa10.37□□□□□ -0.75
LIMCH1-218ENST00000513024 GTF2F1P35269 517 aaKnown RBP eCLIP10.36□□□□□ -0.75
LIMCH1-218ENST00000513024 CNKSR2Q8WXI2 1034 aa10.36□□□□□ -0.75
LIMCH1-218ENST00000513024 LRRCC1Q9C099 1032 aa10.36□□□□□ -0.75
LIMCH1-218ENST00000513024 RIPK4P57078 832 aa10.36□□□□□ -0.75
LIMCH1-218ENST00000513024 CCDC47Q96A33 483 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-218ENST00000513024 SARNPP82979 210 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-218ENST00000513024 TRIM29Q14134 588 aa10.36□□□□□ -0.75
LIMCH1-218ENST00000513024 TCEAL9Q9UHQ7 104 aa10.36□□□□□ -0.75
LIMCH1-218ENST00000513024 SETSIPP0DME0 302 aa10.36□□□□□ -0.75
LIMCH1-218ENST00000513024 SYNE3Q6ZMZ3 975 aa10.36□□□□□ -0.75
LIMCH1-218ENST00000513024 UBXN4Q92575 508 aa10.36□□□□□ -0.75
LIMCH1-218ENST00000513024 API5Q9BZZ5 524 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-218ENST00000513024 EIF2S2P20042 333 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 KIAA1328Q86T90 577 aa10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 PDILTQ8N807 584 aa10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 BACH2Q9BYV9 841 aa10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 SNAPC4Q5SXM2 1469 aa10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 ERLIN2O94905 339 aa10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 IFIT2P09913 472 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 CCDC27Q2M243 656 aa10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 SDF4Q9BRK5 362 aa10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 RBM28Q9NW13 759 aaKnown RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms