RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 EVC2Q86UK5 1308 aa10.64□□□□□ -0.71
VCAN-208ENST00000512590 TSPYL4Q9UJ04 414 aa10.64□□□□□ -0.71
VCAN-208ENST00000512590 FHAD1B1AJZ9 1412 aa10.64□□□□□ -0.71
VCAN-208ENST00000512590 ZNF652Q9Y2D9 606 aa10.64□□□□□ -0.71
VCAN-208ENST00000512590 CCDC180Q9P1Z9 1646 aa10.64□□□□□ -0.71
VCAN-208ENST00000512590 TTLL5Q6EMB2 1281 aa10.63□□□□□ -0.71
VCAN-208ENST00000512590 ABTB2Q8N961 1025 aa10.63□□□□□ -0.71
VCAN-208ENST00000512590 PLEKHO1Q53GL0 409 aaPredicted RBP10.63□□□□□ -0.71
VCAN-208ENST00000512590 CUL5Q93034 780 aa10.63□□□□□ -0.71
VCAN-208ENST00000512590 NLRP6P59044 892 aa10.63□□□□□ -0.71
VCAN-208ENST00000512590 PLCD4Q9BRC7 762 aa10.63□□□□□ -0.71
VCAN-208ENST00000512590 ANKIB1Q9P2G1 1089 aa10.63□□□□□ -0.71
VCAN-208ENST00000512590 AIDAQ96BJ3 306 aa10.63□□□□□ -0.71
VCAN-208ENST00000512590 DNAJC2Q99543 621 aaKnown RBP10.63□□□□□ -0.71
VCAN-208ENST00000512590 CETN2P41208 172 aa10.63□□□□□ -0.71
VCAN-208ENST00000512590 RTN4Q9NQC3 1192 aaKnown RBP10.62□□□□□ -0.71
VCAN-208ENST00000512590 GOLGA6L3A6NEY3 463 aa10.62□□□□□ -0.71
VCAN-208ENST00000512590 CCDC73Q6ZRK6 1079 aa10.62□□□□□ -0.71
VCAN-208ENST00000512590 PIBF1Q8WXW3 757 aa10.62□□□□□ -0.71
VCAN-208ENST00000512590 LRRC45Q96CN5 670 aa10.62□□□□□ -0.71
VCAN-208ENST00000512590 RAI14Q9P0K7 980 aa10.62□□□□□ -0.71
VCAN-208ENST00000512590 IGHMBP2P38935 993 aaKnown RBP10.62□□□□□ -0.71
VCAN-208ENST00000512590 PRPF31Q8WWY3 499 aaKnown RBP10.61□□□□□ -0.71
VCAN-208ENST00000512590 NOD1Q9Y239 953 aa10.61□□□□□ -0.71
VCAN-208ENST00000512590 XPCQ01831 940 aaPredicted RBP10.61□□□□□ -0.71
VCAN-208ENST00000512590 SPG7Q9UQ90 795 aa10.61□□□□□ -0.71
VCAN-208ENST00000512590 ANKRD45Q5TZF3 282 aa10.61□□□□□ -0.71
VCAN-208ENST00000512590 UBAP1LF5GYI3 381 aa10.61□□□□□ -0.71
VCAN-208ENST00000512590 CCDC57Q2TAC2 916 aa10.61□□□□□ -0.71
VCAN-208ENST00000512590 TRIM5Q9C035 493 aa10.61□□□□□ -0.71
VCAN-208ENST00000512590 LUC7LQ9NQ29 371 aaKnown RBP10.61□□□□□ -0.71
VCAN-208ENST00000512590 SH3BP5O60239 455 aa10.6□□□□□ -0.71
VCAN-208ENST00000512590 KIF27Q86VH2 1401 aa10.6□□□□□ -0.71
VCAN-208ENST00000512590 POLR3DP05423 398 aaPredicted RBP10.6□□□□□ -0.71
VCAN-208ENST00000512590 FILIP1LQ4L180 1135 aa10.6□□□□□ -0.71
VCAN-208ENST00000512590 NUP155O75694 1391 aa10.6□□□□□ -0.71
VCAN-208ENST00000512590 SMARCE1Q969G3 411 aa10.6□□□□□ -0.71
VCAN-208ENST00000512590 ZNF408Q9H9D4 720 aa10.6□□□□□ -0.71
VCAN-208ENST00000512590 PIP4K2AP48426 406 aaPredicted RBP10.59□□□□□ -0.71
VCAN-208ENST00000512590 RALBP1Q15311 655 aa10.59□□□□□ -0.71
VCAN-208ENST00000512590 CCDC69A6NI79 296 aa10.59□□□□□ -0.71
VCAN-208ENST00000512590 STIM1Q13586 685 aa10.59□□□□□ -0.71
VCAN-208ENST00000512590 UTP14AQ9BVJ6 771 aaKnown RBP10.59□□□□□ -0.71
VCAN-208ENST00000512590 ZNF287Q9HBT7 754 aa10.59□□□□□ -0.71
VCAN-208ENST00000512590 BRPF1P55201 1214 aaPredicted RBP10.59□□□□□ -0.71
VCAN-208ENST00000512590 SASS6Q6UVJ0 657 aa10.59□□□□□ -0.71
VCAN-208ENST00000512590 CCDC91Q7Z6B0 441 aa10.59□□□□□ -0.71
VCAN-208ENST00000512590 PPM1EQ8WY54 764 aa10.59□□□□□ -0.71
VCAN-208ENST00000512590 PUS7Q96PZ0 661 aaKnown RBP10.59□□□□□ -0.71
VCAN-208ENST00000512590 DEF6Q9H4E7 631 aa10.59□□□□□ -0.71
VCAN-208ENST00000512590 ARL1P40616 181 aaPredicted RBP10.59□□□□□ -0.71
VCAN-208ENST00000512590 SPOUT1Q5T280 376 aaKnown RBP10.59□□□□□ -0.71
VCAN-208ENST00000512590 TXNDC2Q86VQ3 553 aa10.59□□□□□ -0.71
VCAN-208ENST00000512590 VPS37CA5D8V6 355 aaPredicted RBP10.58□□□□□ -0.72
VCAN-208ENST00000512590 NUP133Q8WUM0 1156 aa10.58□□□□□ -0.72
VCAN-208ENST00000512590 UACAQ9BZF9 1416 aa10.58□□□□□ -0.72
VCAN-208ENST00000512590 CCDC96Q2M329 555 aa10.58□□□□□ -0.72
VCAN-208ENST00000512590 KMT5BQ4FZB7 885 aa10.58□□□□□ -0.72
VCAN-208ENST00000512590 GIGYF2Q6Y7W6 1299 aaKnown RBP10.58□□□□□ -0.72
VCAN-208ENST00000512590 RIOK3O14730 519 aaKnown RBP10.58□□□□□ -0.72
VCAN-208ENST00000512590 PPP1R12BO60237 982 aaPredicted RBP10.58□□□□□ -0.72
VCAN-208ENST00000512590 CCDC175P0C221 793 aa10.58□□□□□ -0.72
VCAN-208ENST00000512590 FSD1Q9BTV5 496 aa10.58□□□□□ -0.72
VCAN-208ENST00000512590 HDAC9Q9UKV0 1011 aa10.58□□□□□ -0.72
VCAN-208ENST00000512590 PRC1O43663 620 aa10.58□□□□□ -0.72
VCAN-208ENST00000512590 FERMT1Q9BQL6 677 aa10.58□□□□□ -0.72
VCAN-208ENST00000512590 CGNL1Q0VF96 1302 aa10.58□□□□□ -0.72
VCAN-208ENST00000512590 GPR162Q16538 588 aa10.57□□□□□ -0.72
VCAN-208ENST00000512590 TAX1BP1Q86VP1 789 aa10.57□□□□□ -0.72
VCAN-208ENST00000512590 ANKLE2Q86XL3 938 aa10.57□□□□□ -0.72
VCAN-208ENST00000512590 ANKRD30AQ9BXX3 1397 aa10.57□□□□□ -0.72
VCAN-208ENST00000512590 ZWINTO95229 277 aa10.57□□□□□ -0.72
VCAN-208ENST00000512590 STK25O00506 426 aa10.57□□□□□ -0.72
VCAN-208ENST00000512590 TEX35Q5T0J7 233 aa10.57□□□□□ -0.72
VCAN-208ENST00000512590 CENPQQ7L2Z9 268 aaPredicted RBP10.57□□□□□ -0.72
VCAN-208ENST00000512590 THEMISQ8N1K5 641 aaPredicted RBP10.57□□□□□ -0.72
VCAN-208ENST00000512590 SEC63Q9UGP8 760 aaKnown RBP10.57□□□□□ -0.72
VCAN-208ENST00000512590 FERP16591 822 aa10.57□□□□□ -0.72
VCAN-208ENST00000512590 TXLNBQ8N3L3 684 aa10.57□□□□□ -0.72
VCAN-208ENST00000512590 BAZ1BQ9UIG0 1483 aaKnown RBP10.57□□□□□ -0.72
VCAN-208ENST00000512590 SLF2Q8IX21 1173 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 C6orf229H3BNL8 230 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 NCBP1Q09161 790 aaKnown RBP10.56□□□□□ -0.72
VCAN-208ENST00000512590 BMS1Q14692 1282 aaKnown RBP10.56□□□□□ -0.72
VCAN-208ENST00000512590 PRKAG2Q9UGJ0 569 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 ROCK1Q13464 1354 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 KIF22Q14807 665 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 HSP90B2PQ58FF3 399 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 ATF7IPQ6VMQ6 1270 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 CABP5Q9NP86 173 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 ZSCAN25Q6NSZ9 544 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 SPATA32Q96LK8 384 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 NUCB2P80303 420 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 NOM1Q5C9Z4 860 aaKnown RBP10.56□□□□□ -0.72
VCAN-208ENST00000512590 RAB3IL1Q8TBN0 382 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 TSNARE1Q96NA8 513 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 WWC3Q9ULE0 1092 aa10.56□□□□□ -0.72
VCAN-208ENST00000512590 CCDC82Q8N4S0 544 aa10.55□□□□□ -0.72
VCAN-208ENST00000512590 MNS1Q8NEH6 495 aa10.55□□□□□ -0.72
VCAN-208ENST00000512590 JAKMIP3Q5VZ66 844 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms