RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 STAC3Q96MF2 364 aa12.74□□□□□ -0.37
USP53-207ENST00000510852 PRAG1Q86YV5 1406 aa12.73□□□□□ -0.37
USP53-207ENST00000510852 GTPBP6O43824 516 aaPredicted RBP12.73□□□□□ -0.37
USP53-207ENST00000510852 ANKRD62A6NC57 917 aa12.72□□□□□ -0.37
USP53-207ENST00000510852 NUTM2DQ5VT03 806 aaPredicted RBP12.72□□□□□ -0.37
USP53-207ENST00000510852 SPOCK2Q92563 424 aa12.72□□□□□ -0.37
USP53-207ENST00000510852 ADGRF5Q8IZF2 1346 aa12.72□□□□□ -0.37
USP53-207ENST00000510852 NEXMIFQ5QGS0 1516 aa12.72□□□□□ -0.37
USP53-207ENST00000510852 MYOM2P54296 1465 aa12.72□□□□□ -0.37
USP53-207ENST00000510852 MYO3AQ8NEV4 1616 aa12.71□□□□□ -0.37
USP53-207ENST00000510852 A6NJR5 290 aa12.71□□□□□ -0.37
USP53-207ENST00000510852 ZMYND10O75800 440 aa12.71□□□□□ -0.37
USP53-207ENST00000510852 MYCNP04198 464 aaPredicted RBP12.71□□□□□ -0.37
USP53-207ENST00000510852 MYO5BQ9ULV0 1848 aa12.71□□□□□ -0.37
USP53-207ENST00000510852 VGFO15240 615 aaPredicted RBP12.71□□□□□ -0.38
USP53-207ENST00000510852 APBB1IPQ7Z5R6 666 aaPredicted RBP12.71□□□□□ -0.38
USP53-207ENST00000510852 KDM4CQ9H3R0 1056 aa12.71□□□□□ -0.38
USP53-207ENST00000510852 SPINK5Q9NQ38 1064 aaPredicted RBP12.71□□□□□ -0.38
USP53-207ENST00000510852 TERF2IPQ9NYB0 399 aa12.71□□□□□ -0.38
USP53-207ENST00000510852 PATL2C9JE40 543 aaKnown RBP12.7□□□□□ -0.38
USP53-207ENST00000510852 ARIH1Q9Y4X5 557 aaPredicted RBP12.7□□□□□ -0.38
USP53-207ENST00000510852 UBR1Q8IWV7 1749 aa12.7□□□□□ -0.38
USP53-207ENST00000510852 IFT172Q9UG01 1749 aa12.7□□□□□ -0.38
USP53-207ENST00000510852 ONECUT3O60422 494 aaPredicted RBP12.7□□□□□ -0.38
USP53-207ENST00000510852 GORABQ5T7V8 394 aa12.7□□□□□ -0.38
USP53-207ENST00000510852 RIMS2Q9UQ26 1411 aa12.7□□□□□ -0.38
USP53-207ENST00000510852 KDM5AP29375 1690 aaKnown RBP12.69□□□□□ -0.38
USP53-207ENST00000510852 NRXN1Q9ULB1 1477 aa12.69□□□□□ -0.38
USP53-207ENST00000510852 PPLO60437 1756 aa12.69□□□□□ -0.38
USP53-207ENST00000510852 FLIIQ13045 1269 aa12.69□□□□□ -0.38
USP53-207ENST00000510852 NME8Q8N427 588 aa12.69□□□□□ -0.38
USP53-207ENST00000510852 TMEM2Q9UHN6 1383 aa12.69□□□□□ -0.38
USP53-207ENST00000510852 CEP170BQ9Y4F5 1589 aaPredicted RBP12.69□□□□□ -0.38
USP53-207ENST00000510852 ZFYVE9O95405 1425 aa12.69□□□□□ -0.38
USP53-207ENST00000510852 THEMISQ8N1K5 641 aaPredicted RBP12.69□□□□□ -0.38
USP53-207ENST00000510852 SPDYE4A6NLX3 237 aa12.68□□□□□ -0.38
USP53-207ENST00000510852 SETD1BQ9UPS6 1966 aaKnown RBP12.68□□□□□ -0.38
USP53-207ENST00000510852 RALGAPBQ86X10 1494 aa12.68□□□□□ -0.38
USP53-207ENST00000510852 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.68□□□□□ -0.38
USP53-207ENST00000510852 HDGFP51858 240 aaKnown RBP12.67□□□□□ -0.38
USP53-207ENST00000510852 MICAL1Q8TDZ2 1067 aa12.67□□□□□ -0.38
USP53-207ENST00000510852 PIK3C2GO75747 1445 aa12.67□□□□□ -0.38
USP53-207ENST00000510852 NBPF1Q3BBV0 1214 aa12.67□□□□□ -0.38
USP53-207ENST00000510852 ATF5Q9Y2D1 282 aaPredicted RBP12.67□□□□□ -0.38
USP53-207ENST00000510852 ROCK2O75116 1388 aaKnown RBP12.66□□□□□ -0.38
USP53-207ENST00000510852 RIOK3O14730 519 aaKnown RBP12.66□□□□□ -0.38
USP53-207ENST00000510852 HIRIP3Q9BW71 556 aaPredicted RBP12.66□□□□□ -0.38
USP53-207ENST00000510852 CFAP70Q5T0N1 1121 aa12.66□□□□□ -0.38
USP53-207ENST00000510852 PHF14O94880 888 aa12.65□□□□□ -0.38
USP53-207ENST00000510852 ZNF662Q6ZS27 426 aa12.65□□□□□ -0.38
USP53-207ENST00000510852 EVI5LQ96CN4 794 aa12.65□□□□□ -0.38
USP53-207ENST00000510852 ARHGAP23Q9P227 1491 aa12.65□□□□□ -0.38
USP53-207ENST00000510852 TRPM1Q7Z4N2 1603 aa12.65□□□□□ -0.38
USP53-207ENST00000510852 ZNF142P52746 1687 aaPredicted RBP12.65□□□□□ -0.38
USP53-207ENST00000510852 SLIT1O75093 1534 aa12.65□□□□□ -0.38
USP53-207ENST00000510852 LTKP29376 864 aa12.64□□□□□ -0.39
USP53-207ENST00000510852 TXNDC2Q86VQ3 553 aa12.64□□□□□ -0.39
USP53-207ENST00000510852 CARD11Q9BXL7 1154 aa12.64□□□□□ -0.39
USP53-207ENST00000510852 C14orf93Q9H972 538 aaKnown RBP12.64□□□□□ -0.39
USP53-207ENST00000510852 EID1Q9Y6B2 187 aa12.64□□□□□ -0.39
USP53-207ENST00000510852 GPRASP1Q5JY77 1395 aa12.64□□□□□ -0.39
USP53-207ENST00000510852 RALBP1Q15311 655 aa12.63□□□□□ -0.39
USP53-207ENST00000510852 TESPA1A2RU30 521 aaPredicted RBP12.62□□□□□ -0.39
USP53-207ENST00000510852 CCDC97Q96F63 343 aaPredicted RBP12.62□□□□□ -0.39
USP53-207ENST00000510852 EIF4G2P78344 907 aaKnown RBP eCLIP12.61□□□□□ -0.39
USP53-207ENST00000510852 KIAA1210Q9ULL0 1709 aa12.61□□□□□ -0.39
USP53-207ENST00000510852 HSPA5P11021 654 aaKnown RBP12.6□□□□□ -0.39
USP53-207ENST00000510852 GTF2E1P29083 439 aaPredicted RBP12.6□□□□□ -0.39
USP53-207ENST00000510852 SCAF11Q99590 1463 aaKnown RBP12.6□□□□□ -0.39
USP53-207ENST00000510852 SERPINA10Q9UK55 444 aa12.6□□□□□ -0.39
USP53-207ENST00000510852 PLEKHG1Q9ULL1 1385 aa12.6□□□□□ -0.39
USP53-207ENST00000510852 USP47Q96K76 1375 aa12.6□□□□□ -0.39
USP53-207ENST00000510852 TMEM132EQ6IEE7 984 aa12.6□□□□□ -0.39
USP53-207ENST00000510852 ANKLE2Q86XL3 938 aa12.6□□□□□ -0.39
USP53-207ENST00000510852 RAB11FIP3O75154 756 aa12.59□□□□□ -0.39
USP53-207ENST00000510852 RBM26Q5T8P6 1007 aaKnown RBP12.59□□□□□ -0.39
USP53-207ENST00000510852 FAM117AQ9C073 453 aa12.59□□□□□ -0.39
USP53-207ENST00000510852 KIAA1522Q9P206 1035 aaPredicted RBP12.59□□□□□ -0.39
USP53-207ENST00000510852 ALKQ9UM73 1620 aa12.58□□□□□ -0.4
USP53-207ENST00000510852 DRC1Q96MC2 740 aa12.58□□□□□ -0.4
USP53-207ENST00000510852 SETBP1Q9Y6X0 1596 aa12.58□□□□□ -0.4
USP53-207ENST00000510852 ADGRB1O14514 1584 aa12.58□□□□□ -0.4
USP53-207ENST00000510852 FOSBP53539 338 aa12.58□□□□□ -0.4
USP53-207ENST00000510852 LAMC1P11047 1609 aa12.57□□□□□ -0.4
USP53-207ENST00000510852 PEX14O75381 377 aa12.57□□□□□ -0.4
USP53-207ENST00000510852 NRXN3Q9Y4C0 1643 aa12.57□□□□□ -0.4
USP53-207ENST00000510852 ADAMTS13Q76LX8 1427 aa12.57□□□□□ -0.4
USP53-207ENST00000510852 LMTK3Q96Q04 1460 aa12.56□□□□□ -0.4
USP53-207ENST00000510852 HSPA2P54652 639 aa12.56□□□□□ -0.4
USP53-207ENST00000510852 FOXD4Q12950 439 aaPredicted RBP12.56□□□□□ -0.4
USP53-207ENST00000510852 ST20-MTHFSA0A0A6YYL1 179 aa12.56□□□□□ -0.4
USP53-207ENST00000510852 ASXL1Q8IXJ9 1541 aa12.55□□□□□ -0.4
USP53-207ENST00000510852 NCKAP5LQ9HCH0 1330 aa12.55□□□□□ -0.4
USP53-207ENST00000510852 IQGAP1P46940 1657 aa12.55□□□□□ -0.4
USP53-207ENST00000510852 SLC26A8Q96RN1 970 aa12.55□□□□□ -0.4
USP53-207ENST00000510852 RPS6KL1Q9Y6S9 549 aa12.55□□□□□ -0.4
USP53-207ENST00000510852 CLGNO14967 610 aa12.54□□□□□ -0.4
USP53-207ENST00000510852 GIMAP6Q6P9H5 292 aa12.54□□□□□ -0.4
USP53-207ENST00000510852 RINLQ6ZS11 566 aa12.54□□□□□ -0.4
USP53-207ENST00000510852 TRAK1Q9UPV9 953 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms