RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 MAP10Q9P2G4 905 aa16.41■□□□□ 0.22
USP53-206ENST00000510737 F12P00748 615 aaPredicted RBP16.4■□□□□ 0.22
USP53-206ENST00000510737 SNRPBP14678 240 aaKnown RBP16.38■□□□□ 0.21
USP53-206ENST00000510737 TLL2Q9Y6L7 1015 aa16.38■□□□□ 0.21
USP53-206ENST00000510737 CTHP32929 405 aa16.37■□□□□ 0.21
USP53-206ENST00000510737 LILRB3O75022 631 aa16.36■□□□□ 0.21
USP53-206ENST00000510737 TUSC1Q2TAM9 212 aa16.34■□□□□ 0.21
USP53-206ENST00000510737 RTL5Q5HYW3 569 aaPredicted RBP16.33■□□□□ 0.2
USP53-206ENST00000510737 TREML4Q6UXN2 200 aa16.33■□□□□ 0.2
USP53-206ENST00000510737 FOXJ1Q92949 421 aa16.32■□□□□ 0.2
USP53-206ENST00000510737 TRIM47Q96LD4 638 aa16.31■□□□□ 0.2
USP53-206ENST00000510737 WASF2Q9Y6W5 498 aa16.31■□□□□ 0.2
USP53-206ENST00000510737 VARSP26640 1264 aaKnown RBP16.3■□□□□ 0.2
USP53-206ENST00000510737 NUTM2BA6NNL0 878 aaPredicted RBP16.29■□□□□ 0.2
USP53-206ENST00000510737 NUTM2EB1AL46 878 aaPredicted RBP16.29■□□□□ 0.2
USP53-206ENST00000510737 CLK2P49760 499 aaKnown RBP16.29■□□□□ 0.2
USP53-206ENST00000510737 NUTM2DQ5VT03 806 aaPredicted RBP16.29■□□□□ 0.2
USP53-206ENST00000510737 NUTM2AQ8IVF1 878 aaPredicted RBP16.29■□□□□ 0.2
USP53-206ENST00000510737 POLR3EQ9NVU0 708 aa16.29■□□□□ 0.2
USP53-206ENST00000510737 BMP1P13497 986 aa16.28■□□□□ 0.2
USP53-206ENST00000510737 C4orf48Q5BLP8 95 aa16.28■□□□□ 0.2
USP53-206ENST00000510737 TRIM46Q7Z4K8 759 aa16.28■□□□□ 0.2
USP53-206ENST00000510737 TSC1Q92574 1164 aa16.28■□□□□ 0.2
USP53-206ENST00000510737 FBXO31Q5XUX0 539 aaPredicted RBP16.27■□□□□ 0.2
USP53-206ENST00000510737 GPBP1L1Q9HC44 474 aaPredicted RBP16.26■□□□□ 0.19
USP53-206ENST00000510737 CAPN5O15484 640 aaPredicted RBP16.25■□□□□ 0.19
USP53-206ENST00000510737 NFX1Q12986 1120 aaKnown RBP16.25■□□□□ 0.19
USP53-206ENST00000510737 MPNDQ8N594 471 aa16.25■□□□□ 0.19
USP53-206ENST00000510737 LCE2CQ5TA81 110 aa16.24■□□□□ 0.19
USP53-206ENST00000510737 SENP2Q9HC62 589 aa16.24■□□□□ 0.19
USP53-206ENST00000510737 NNTQ13423 1086 aa16.22■□□□□ 0.19
USP53-206ENST00000510737 WFS1O76024 890 aa16.19■□□□□ 0.18
USP53-206ENST00000510737 FAM174AQ8TBP5 190 aa16.19■□□□□ 0.18
USP53-206ENST00000510737 RSPH6AQ9H0K4 717 aa16.19■□□□□ 0.18
USP53-206ENST00000510737 KDM4CQ9H3R0 1056 aa16.19■□□□□ 0.18
USP53-206ENST00000510737 PLEKHG3A1L390 1219 aa16.18■□□□□ 0.18
USP53-206ENST00000510737 CDK15Q96Q40 435 aa16.18■□□□□ 0.18
USP53-206ENST00000510737 KLF16Q9BXK1 252 aaPredicted RBP16.18■□□□□ 0.18
USP53-206ENST00000510737 FAM117AQ9C073 453 aa16.18■□□□□ 0.18
USP53-206ENST00000510737 KIFC2Q96AC6 838 aa16.17■□□□□ 0.18
USP53-206ENST00000510737 ADH1CP00326 375 aa16.16■□□□□ 0.18
USP53-206ENST00000510737 TIMP2P16035 220 aa16.16■□□□□ 0.18
USP53-206ENST00000510737 BCANQ96GW7 911 aa16.16■□□□□ 0.18
USP53-206ENST00000510737 CTDSPL2Q05D32 466 aa16.15■□□□□ 0.18
USP53-206ENST00000510737 PROCA1Q8NCQ7 364 aaPredicted RBP16.15■□□□□ 0.18
USP53-206ENST00000510737 HELBQ8NG08 1087 aaPredicted RBP16.15■□□□□ 0.18
USP53-206ENST00000510737 NR3C2P08235 984 aa16.13■□□□□ 0.17
USP53-206ENST00000510737 GRM5P41594 1212 aa16.13■□□□□ 0.17
USP53-206ENST00000510737 ARID5BQ14865 1188 aa16.13■□□□□ 0.17
USP53-206ENST00000510737 SH3RF1Q7Z6J0 888 aa16.13■□□□□ 0.17
USP53-206ENST00000510737 TERTO14746 1132 aaKnown RBP16.12■□□□□ 0.17
USP53-206ENST00000510737 AGERQ15109 404 aa16.12■□□□□ 0.17
USP53-206ENST00000510737 WDR4P57081 412 aaKnown RBP16.11■□□□□ 0.17
USP53-206ENST00000510737 SKIV2LQ15477 1246 aaKnown RBP16.11■□□□□ 0.17
USP53-206ENST00000510737 SH3BP5LQ7L8J4 393 aa16.11■□□□□ 0.17
USP53-206ENST00000510737 BPHLQ86WA6 291 aaPredicted RBP16.11■□□□□ 0.17
USP53-206ENST00000510737 C1QTNF2Q9BXJ5 285 aa16.11■□□□□ 0.17
USP53-206ENST00000510737 SH3D19Q5HYK7 790 aa16.1■□□□□ 0.17
USP53-206ENST00000510737 ZFP42Q96MM3 310 aa16.1■□□□□ 0.17
USP53-206ENST00000510737 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.1■□□□□ 0.17
USP53-206ENST00000510737 LRRN4Q8WUT4 740 aa16.09■□□□□ 0.17
USP53-206ENST00000510737 ZFAND3Q9H8U3 227 aa16.08■□□□□ 0.16
USP53-206ENST00000510737 ARMC2Q8NEN0 867 aa16.07■□□□□ 0.16
USP53-206ENST00000510737 ITPKCQ96DU7 683 aa16.06■□□□□ 0.16
USP53-206ENST00000510737 MRPL14Q6P1L8 145 aaKnown RBP16.05■□□□□ 0.16
USP53-206ENST00000510737 SLC24A1O60721 1099 aa16.04■□□□□ 0.16
USP53-206ENST00000510737 NBPF14Q5TI25 921 aa16.04■□□□□ 0.16
USP53-206ENST00000510737 ZIC2O95409 532 aaPredicted RBP16.03■□□□□ 0.16
USP53-206ENST00000510737 NR5A1Q13285 461 aa16.03■□□□□ 0.16
USP53-206ENST00000510737 PPP2R2DQ66LE6 453 aa16.03■□□□□ 0.16
USP53-206ENST00000510737 DDRGK1Q96HY6 314 aa16.03■□□□□ 0.16
USP53-206ENST00000510737 PURBQ96QR8 312 aaKnown RBP16.03■□□□□ 0.16
USP53-206ENST00000510737 MAGEB6P1A0A0J9YX57 407 aa16.02■□□□□ 0.16
USP53-206ENST00000510737 TRMT44Q8IYL2 757 aaKnown RBP16.01■□□□□ 0.15
USP53-206ENST00000510737 WIPF1O43516 503 aa16■□□□□ 0.15
USP53-206ENST00000510737 NR6A1Q15406 480 aa15.99■□□□□ 0.15
USP53-206ENST00000510737 CARD14Q9BXL6 1004 aa15.99■□□□□ 0.15
USP53-206ENST00000510737 NXF1Q9UBU9 619 aaKnown RBP15.99■□□□□ 0.15
USP53-206ENST00000510737 FSHRP23945 695 aa15.98■□□□□ 0.15
USP53-206ENST00000510737 VEGFBP49765 207 aa15.98■□□□□ 0.15
USP53-206ENST00000510737 ERFEQ4G0M1 354 aa15.98■□□□□ 0.15
USP53-206ENST00000510737 MAP4K5Q9Y4K4 846 aa15.98■□□□□ 0.15
USP53-206ENST00000510737 SOBPA7XYQ1 873 aa15.97■□□□□ 0.15
USP53-206ENST00000510737 GPKOWQ92917 476 aaPredicted RBP eCLIP15.96■□□□□ 0.15
USP53-206ENST00000510737 OCSTAMPQ9BR26 566 aa15.96■□□□□ 0.15
USP53-206ENST00000510737 VASH1Q7L8A9 365 aaPredicted RBP15.95■□□□□ 0.14
USP53-206ENST00000510737 EPS8L1Q8TE68 723 aa15.95■□□□□ 0.14
USP53-206ENST00000510737 FKBPLQ9UIM3 349 aa15.95■□□□□ 0.14
USP53-206ENST00000510737 AP1G2O75843 785 aa15.93■□□□□ 0.14
USP53-206ENST00000510737 SCARF1Q14162 830 aa15.93■□□□□ 0.14
USP53-206ENST00000510737 PDXDC2PQ6P474 469 aa15.92■□□□□ 0.14
USP53-206ENST00000510737 HMX1Q9NP08 348 aaPredicted RBP15.92■□□□□ 0.14
USP53-206ENST00000510737 C6orf118Q5T5N4 469 aa15.91■□□□□ 0.14
USP53-206ENST00000510737 MEIOBQ8N635 442 aa15.9■□□□□ 0.14
USP53-206ENST00000510737 ATP1B4Q9UN42 357 aaPredicted RBP15.9■□□□□ 0.14
USP53-206ENST00000510737 H3BM21 787 aa15.89■□□□□ 0.13
USP53-206ENST00000510737 ARHGAP9Q9BRR9 750 aa15.89■□□□□ 0.13
USP53-206ENST00000510737 ERBB4Q15303 1308 aa15.89■□□□□ 0.13
USP53-206ENST00000510737 CCDC116Q8IYX3 515 aa15.87■□□□□ 0.13
USP53-206ENST00000510737 GMPRP36959 345 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 132.2 ms