RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 PSME1Q06323 249 aa14.12□□□□□ -0.15
NEDD9-211ENST00000508546 PHF8Q9UPP1 1060 aa14.12□□□□□ -0.15
NEDD9-211ENST00000508546 NRXN1Q9ULB1 1477 aa14.12□□□□□ -0.15
NEDD9-211ENST00000508546 RGL3Q3MIN7 710 aa14.11□□□□□ -0.15
NEDD9-211ENST00000508546 SPON1Q9HCB6 807 aa14.11□□□□□ -0.15
NEDD9-211ENST00000508546 ARHGEF10O15013 1369 aa14.1□□□□□ -0.15
NEDD9-211ENST00000508546 TRIM37O94972 964 aa14.1□□□□□ -0.15
NEDD9-211ENST00000508546 FAM83GA6ND36 823 aa14.09□□□□□ -0.15
NEDD9-211ENST00000508546 KCNQ2O43526 872 aa14.09□□□□□ -0.15
NEDD9-211ENST00000508546 TRPM3Q9HCF6 1732 aaPredicted RBP14.08□□□□□ -0.16
NEDD9-211ENST00000508546 CRYBG1Q9Y4K1 1723 aa14.08□□□□□ -0.16
NEDD9-211ENST00000508546 APBA3O96018 575 aa14.07□□□□□ -0.16
NEDD9-211ENST00000508546 C14orf93Q9H972 538 aaKnown RBP14.07□□□□□ -0.16
NEDD9-211ENST00000508546 SPATA31A5Q5VU36 1347 aa14.07□□□□□ -0.16
NEDD9-211ENST00000508546 SPATA31A7Q8IWB4 1347 aa14.07□□□□□ -0.16
NEDD9-211ENST00000508546 ALS2Q96Q42 1657 aa14.07□□□□□ -0.16
NEDD9-211ENST00000508546 ANKARQ7Z5J8 1434 aa14.07□□□□□ -0.16
NEDD9-211ENST00000508546 BTG4Q9NY30 223 aa14.06□□□□□ -0.16
NEDD9-211ENST00000508546 DHX57Q6P158 1386 aaKnown RBP14.06□□□□□ -0.16
NEDD9-211ENST00000508546 DLC1Q96QB1 1528 aa14.05□□□□□ -0.16
NEDD9-211ENST00000508546 RGPD3A6NKT7 1758 aaPredicted RBP14.04□□□□□ -0.16
NEDD9-211ENST00000508546 RGPD4Q7Z3J3 1758 aa14.04□□□□□ -0.16
NEDD9-211ENST00000508546 LMOD2Q6P5Q4 547 aa14.04□□□□□ -0.16
NEDD9-211ENST00000508546 MPHOSPH9Q99550 1183 aa14.04□□□□□ -0.16
NEDD9-211ENST00000508546 NBPF8Q3BBV2 869 aa14.03□□□□□ -0.16
NEDD9-211ENST00000508546 NBPF14Q5TI25 921 aa14.03□□□□□ -0.16
NEDD9-211ENST00000508546 FAM196AQ6ZSG2 479 aa14.02□□□□□ -0.17
NEDD9-211ENST00000508546 PRAM1Q96QH2 718 aa14.02□□□□□ -0.17
NEDD9-211ENST00000508546 CFAP70Q5T0N1 1121 aa14.01□□□□□ -0.17
NEDD9-211ENST00000508546 PMFBP1Q8TBY8 1022 aa14□□□□□ -0.17
NEDD9-211ENST00000508546 SHANK3Q9BYB0 1731 aa14□□□□□ -0.17
NEDD9-211ENST00000508546 GPRASP1Q5JY77 1395 aa13.99□□□□□ -0.17
NEDD9-211ENST00000508546 SAFB2Q14151 953 aaKnown RBP eCLIP13.99□□□□□ -0.17
NEDD9-211ENST00000508546 ANO8Q9HCE9 1232 aaPredicted RBP13.99□□□□□ -0.17
NEDD9-211ENST00000508546 EIF3AQ14152 1382 aaKnown RBP13.98□□□□□ -0.17
NEDD9-211ENST00000508546 SPATA31A1Q5TZJ5 1347 aa13.98□□□□□ -0.17
NEDD9-211ENST00000508546 GIGYF1O75420 1035 aaPredicted RBP13.98□□□□□ -0.17
NEDD9-211ENST00000508546 PDGFDQ9GZP0 370 aaPredicted RBP13.98□□□□□ -0.17
NEDD9-211ENST00000508546 POGKQ9P215 609 aa13.98□□□□□ -0.17
NEDD9-211ENST00000508546 TULP4Q9NRJ4 1543 aa13.98□□□□□ -0.17
NEDD9-211ENST00000508546 ADGRB1O14514 1584 aa13.97□□□□□ -0.17
NEDD9-211ENST00000508546 ACIN1Q9UKV3 1341 aaKnown RBP13.97□□□□□ -0.17
NEDD9-211ENST00000508546 PTGER2P43116 358 aa13.97□□□□□ -0.17
NEDD9-211ENST00000508546 ITSN1Q15811 1721 aa13.96□□□□□ -0.17
NEDD9-211ENST00000508546 PEAK1Q9H792 1746 aa13.95□□□□□ -0.18
NEDD9-211ENST00000508546 PRR36Q9H6K5 1346 aa13.95□□□□□ -0.18
NEDD9-211ENST00000508546 PHRF1Q9P1Y6 1649 aaKnown RBP13.95□□□□□ -0.18
NEDD9-211ENST00000508546 FHDC1Q9C0D6 1143 aaPredicted RBP13.95□□□□□ -0.18
NEDD9-211ENST00000508546 ZBTB7AO95365 584 aa13.94□□□□□ -0.18
NEDD9-211ENST00000508546 PRDM11Q9NQV5 511 aa13.94□□□□□ -0.18
NEDD9-211ENST00000508546 PARP4Q9UKK3 1724 aaKnown RBP13.93□□□□□ -0.18
NEDD9-211ENST00000508546 SBF2Q86WG5 1849 aa13.93□□□□□ -0.18
NEDD9-211ENST00000508546 SYT17Q9BSW7 474 aa13.93□□□□□ -0.18
NEDD9-211ENST00000508546 WASLO00401 505 aaPredicted RBP13.92□□□□□ -0.18
NEDD9-211ENST00000508546 HIRIP3Q9BW71 556 aaPredicted RBP13.92□□□□□ -0.18
NEDD9-211ENST00000508546 MINK1Q8N4C8 1332 aaPredicted RBP13.91□□□□□ -0.18
NEDD9-211ENST00000508546 NGDNQ8NEJ9 315 aaKnown RBP13.91□□□□□ -0.18
NEDD9-211ENST00000508546 TRAK1Q9UPV9 953 aa13.91□□□□□ -0.18
NEDD9-211ENST00000508546 KIAA0232Q92628 1395 aa13.91□□□□□ -0.18
NEDD9-211ENST00000508546 ARHGEF28Q8N1W1 1705 aaKnown RBP13.9□□□□□ -0.18
NEDD9-211ENST00000508546 ATP7BP35670 1465 aa13.9□□□□□ -0.18
NEDD9-211ENST00000508546 LRRC37A3O60309 1634 aa13.9□□□□□ -0.19
NEDD9-211ENST00000508546 SSH2Q76I76 1423 aa13.9□□□□□ -0.19
NEDD9-211ENST00000508546 GOLGB1Q14789 3259 aaKnown RBP13.89□□□□□ -0.19
NEDD9-211ENST00000508546 PAK3O75914 559 aaPredicted RBP13.89□□□□□ -0.19
NEDD9-211ENST00000508546 STRN4Q9NRL3 753 aa13.89□□□□□ -0.19
NEDD9-211ENST00000508546 ATF5Q9Y2D1 282 aaPredicted RBP13.89□□□□□ -0.19
NEDD9-211ENST00000508546 PDE3BQ13370 1112 aa13.88□□□□□ -0.19
NEDD9-211ENST00000508546 BARGINQ6ZT62 677 aa13.88□□□□□ -0.19
NEDD9-211ENST00000508546 USP35Q9P2H5 1018 aa13.88□□□□□ -0.19
NEDD9-211ENST00000508546 CHRNA2Q15822 529 aa13.87□□□□□ -0.19
NEDD9-211ENST00000508546 STAC3Q96MF2 364 aa13.87□□□□□ -0.19
NEDD9-211ENST00000508546 SGIP1Q9BQI5 828 aa13.87□□□□□ -0.19
NEDD9-211ENST00000508546 TOPAZ1Q8N9V7 1692 aa13.87□□□□□ -0.19
NEDD9-211ENST00000508546 LMO7Q8WWI1 1683 aa13.87□□□□□ -0.19
NEDD9-211ENST00000508546 MAP3K5Q99683 1374 aa13.86□□□□□ -0.19
NEDD9-211ENST00000508546 OVOS2A0A0G2JMS6 1433 aa13.86□□□□□ -0.19
NEDD9-211ENST00000508546 OVOS2A0A0J9YW53 1432 aa13.86□□□□□ -0.19
NEDD9-211ENST00000508546 OVOS2Q6IE36 1432 aa13.86□□□□□ -0.19
NEDD9-211ENST00000508546 NUDT16Q96DE0 195 aaKnown RBP13.85□□□□□ -0.19
NEDD9-211ENST00000508546 POLR3AO14802 1390 aaPredicted RBP13.84□□□□□ -0.19
NEDD9-211ENST00000508546 ZC3H6P61129 1189 aaKnown RBP13.84□□□□□ -0.19
NEDD9-211ENST00000508546 EVA1CP58658 441 aa13.83□□□□□ -0.2
NEDD9-211ENST00000508546 PTF1AQ7RTS3 328 aa13.83□□□□□ -0.2
NEDD9-211ENST00000508546 WNK3Q9BYP7 1800 aa13.83□□□□□ -0.2
NEDD9-211ENST00000508546 CPDO75976 1380 aa13.83□□□□□ -0.2
NEDD9-211ENST00000508546 TCP11L2Q8N4U5 519 aa13.82□□□□□ -0.2
NEDD9-211ENST00000508546 DCAF11Q8TEB1 546 aa13.82□□□□□ -0.2
NEDD9-211ENST00000508546 BCL11BQ9C0K0 894 aaPredicted RBP13.82□□□□□ -0.2
NEDD9-211ENST00000508546 KDM2AQ9Y2K7 1162 aa13.82□□□□□ -0.2
NEDD9-211ENST00000508546 THRAP3Q9Y2W1 955 aaKnown RBP13.82□□□□□ -0.2
NEDD9-211ENST00000508546 PAPPAQ13219 1627 aa13.82□□□□□ -0.2
NEDD9-211ENST00000508546 C11orf95C9JLR9 678 aaPredicted RBP13.81□□□□□ -0.2
NEDD9-211ENST00000508546 PLSCR1O15162 318 aa13.81□□□□□ -0.2
NEDD9-211ENST00000508546 LARP1Q6PKG0 1096 aaKnown RBP13.81□□□□□ -0.2
NEDD9-211ENST00000508546 PROM2Q8N271 834 aa13.81□□□□□ -0.2
NEDD9-211ENST00000508546 MTFR1LQ9H019 292 aa13.81□□□□□ -0.2
NEDD9-211ENST00000508546 USP19O94966 1318 aa13.81□□□□□ -0.2
NEDD9-211ENST00000508546 ACEP12821 1306 aa13.81□□□□□ -0.2
NEDD9-211ENST00000508546 PLEKHG3A1L390 1219 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms