RNA–Protein interactions for RNA: ENST00000507875.5

CLCN3-206, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2

Gene CLCN3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-206ENST00000507875 KIF15Q9NS87 1388 aa10.06□□□□□ -0.8
CLCN3-206ENST00000507875 PRKAR2AP13861 404 aaKnown RBP10.05□□□□□ -0.8
CLCN3-206ENST00000507875 IQGAP3Q86VI3 1631 aa10.05□□□□□ -0.8
CLCN3-206ENST00000507875 ARID4BQ4LE39 1312 aaPredicted RBP10.05□□□□□ -0.8
CLCN3-206ENST00000507875 MICALL2Q8IY33 904 aa10.05□□□□□ -0.8
CLCN3-206ENST00000507875 FAM217BQ9NTX9 383 aaPredicted RBP10.05□□□□□ -0.8
CLCN3-206ENST00000507875 SPAG9O60271 1321 aaKnown RBP10.04□□□□□ -0.8
CLCN3-206ENST00000507875 REREQ9P2R6 1566 aa10.04□□□□□ -0.8
CLCN3-206ENST00000507875 BRD2P25440 801 aaKnown RBP10.04□□□□□ -0.8
CLCN3-206ENST00000507875 CLK2P49760 499 aaKnown RBP10.04□□□□□ -0.8
CLCN3-206ENST00000507875 TMC2Q8TDI7 906 aa10.04□□□□□ -0.8
CLCN3-206ENST00000507875 RRP7BPQ9NSQ0 103 aa10.04□□□□□ -0.8
CLCN3-206ENST00000507875 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.04□□□□□ -0.81e-6■■■□□ 15.4
CLCN3-206ENST00000507875 CHIC2Q9UKJ5 165 aa10.04□□□□□ -0.8
CLCN3-206ENST00000507875 PPP1R15AO75807 674 aaPredicted RBP10.03□□□□□ -0.8
CLCN3-206ENST00000507875 CCDC27Q2M243 656 aa10.03□□□□□ -0.8
CLCN3-206ENST00000507875 RNF17Q9BXT8 1623 aaKnown RBP10.03□□□□□ -0.8
CLCN3-206ENST00000507875 FRMPD1Q5SYB0 1578 aa10.02□□□□□ -0.81
CLCN3-206ENST00000507875 CFAP70Q5T0N1 1121 aa10.01□□□□□ -0.81
CLCN3-206ENST00000507875 FAM135AQ9P2D6 1515 aa10.01□□□□□ -0.81
CLCN3-206ENST00000507875 BRD1O95696 1058 aa10.01□□□□□ -0.81
CLCN3-206ENST00000507875 SRPK2P78362 688 aaKnown RBP10.01□□□□□ -0.81
CLCN3-206ENST00000507875 ILDR1Q86SU0 546 aaPredicted RBP10.01□□□□□ -0.81
CLCN3-206ENST00000507875 CSPP1Q1MSJ5 1256 aa10□□□□□ -0.81
CLCN3-206ENST00000507875 ABCA6Q8N139 1617 aa10□□□□□ -0.81
CLCN3-206ENST00000507875 ARHGEF40Q8TER5 1519 aa10□□□□□ -0.81
CLCN3-206ENST00000507875 TSR1Q2NL82 804 aaKnown RBP10□□□□□ -0.81
CLCN3-206ENST00000507875 CDCA8Q53HL2 280 aa10□□□□□ -0.81
CLCN3-206ENST00000507875 TBC1D2Q9BYX2 928 aa10□□□□□ -0.81
CLCN3-206ENST00000507875 MYT1LQ9UL68 1186 aa10□□□□□ -0.81
CLCN3-206ENST00000507875 DHX29Q7Z478 1369 aaKnown RBP10□□□□□ -0.81
CLCN3-206ENST00000507875 DIP2CQ9Y2E4 1556 aa10□□□□□ -0.81
CLCN3-206ENST00000507875 ZC3H13Q5T200 1668 aaKnown RBP10□□□□□ -0.81
CLCN3-206ENST00000507875 PBXIP1Q96AQ6 731 aa9.99□□□□□ -0.81
CLCN3-206ENST00000507875 PZPP20742 1482 aa9.99□□□□□ -0.81
CLCN3-206ENST00000507875 VWDEQ8N2E2 1590 aa9.99□□□□□ -0.81
CLCN3-206ENST00000507875 PRDM15P57071 1507 aaPredicted RBP9.99□□□□□ -0.81
CLCN3-206ENST00000507875 TET3O43151 1660 aa9.99□□□□□ -0.81
CLCN3-206ENST00000507875 A2MP01023 1474 aa9.98□□□□□ -0.81
CLCN3-206ENST00000507875 HDGFL1Q5TGJ6 251 aa9.98□□□□□ -0.81
CLCN3-206ENST00000507875 KIF3CO14782 793 aa9.98□□□□□ -0.81
CLCN3-206ENST00000507875 QPCTQ16769 361 aa9.98□□□□□ -0.81
CLCN3-206ENST00000507875 TAF7LQ5H9L4 462 aa9.97□□□□□ -0.81
CLCN3-206ENST00000507875 AGLP35573 1532 aa9.97□□□□□ -0.81
CLCN3-206ENST00000507875 PTGER2P43116 358 aa9.97□□□□□ -0.81
CLCN3-206ENST00000507875 AFAP1Q8N556 730 aa9.97□□□□□ -0.81
CLCN3-206ENST00000507875 PKNOX2Q96KN3 472 aa9.97□□□□□ -0.81
CLCN3-206ENST00000507875 LMTK2Q8IWU2 1503 aa9.97□□□□□ -0.81
CLCN3-206ENST00000507875 KCNA1Q09470 495 aa9.96□□□□□ -0.82
CLCN3-206ENST00000507875 METTL3Q86U44 580 aaKnown RBP9.96□□□□□ -0.82
CLCN3-206ENST00000507875 TRIM52Q96A61 297 aa9.96□□□□□ -0.82
CLCN3-206ENST00000507875 RBM33Q96EV2 1170 aaKnown RBP9.96□□□□□ -0.82
CLCN3-206ENST00000507875 MPHOSPH9Q99550 1183 aa9.96□□□□□ -0.82
CLCN3-206ENST00000507875 ATP10AO60312 1499 aa9.96□□□□□ -0.82
CLCN3-206ENST00000507875 YEATS2Q9ULM3 1422 aa9.96□□□□□ -0.82
CLCN3-206ENST00000507875 MS4A3Q96HJ5 214 aa9.95□□□□□ -0.82
CLCN3-206ENST00000507875 KANK1Q14678 1352 aa9.95□□□□□ -0.82
CLCN3-206ENST00000507875 ADAMTSL3P82987 1691 aa9.95□□□□□ -0.82
CLCN3-206ENST00000507875 PAK3O75914 559 aaPredicted RBP9.95□□□□□ -0.82
CLCN3-206ENST00000507875 TMEM92Q6UXU6 159 aa9.95□□□□□ -0.82
CLCN3-206ENST00000507875 SND1Q7KZF4 910 aaKnown RBP eCLIP9.95□□□□□ -0.823e-6■■□□□ 11.7
CLCN3-206ENST00000507875 MROH1Q8NDA8 1641 aa9.95□□□□□ -0.82
CLCN3-206ENST00000507875 PTPRMP28827 1452 aa9.94□□□□□ -0.82
CLCN3-206ENST00000507875 BANK1Q8NDB2 785 aa9.94□□□□□ -0.82
CLCN3-206ENST00000507875 NUP155O75694 1391 aa9.94□□□□□ -0.82
CLCN3-206ENST00000507875 EVI5O60447 810 aa9.93□□□□□ -0.82
CLCN3-206ENST00000507875 GPR37L1O60883 481 aa9.93□□□□□ -0.82
CLCN3-206ENST00000507875 ZRANB1Q9UGI0 708 aa9.93□□□□□ -0.82
CLCN3-206ENST00000507875 KIAA1522Q9P206 1035 aaPredicted RBP9.93□□□□□ -0.82
CLCN3-206ENST00000507875 SPHKAPQ2M3C7 1700 aa9.93□□□□□ -0.82
CLCN3-206ENST00000507875 NEURL4Q96JN8 1562 aa9.93□□□□□ -0.82
CLCN3-206ENST00000507875 MLECQ14165 292 aa9.92□□□□□ -0.82
CLCN3-206ENST00000507875 ANKRD30BQ9BXX2 1392 aa9.92□□□□□ -0.82
CLCN3-206ENST00000507875 E9PCH4 1651 aa9.92□□□□□ -0.82
CLCN3-206ENST00000507875 RPRD2Q5VT52 1461 aaKnown RBP9.92□□□□□ -0.82
CLCN3-206ENST00000507875 HSP90B1P14625 803 aaKnown RBP9.92□□□□□ -0.82
CLCN3-206ENST00000507875 MADDQ8WXG6 1647 aa9.91□□□□□ -0.82
CLCN3-206ENST00000507875 TMEM88BA6NKF7 163 aa9.91□□□□□ -0.82
CLCN3-206ENST00000507875 CACNB1Q02641 598 aaPredicted RBP9.91□□□□□ -0.82
CLCN3-206ENST00000507875 AMOTL2Q9Y2J4 779 aa9.91□□□□□ -0.82
CLCN3-206ENST00000507875 CEP152O94986 1710 aa9.91□□□□□ -0.82
CLCN3-206ENST00000507875 TTLL13PA6NNM8 815 aa9.91□□□□□ -0.82
CLCN3-206ENST00000507875 MAP3K7O43318 606 aa9.91□□□□□ -0.82
CLCN3-206ENST00000507875 NEFLP07196 543 aa9.91□□□□□ -0.82
CLCN3-206ENST00000507875 FAM177A1Q8N128 213 aaPredicted RBP9.91□□□□□ -0.82
CLCN3-206ENST00000507875 PDCD7Q8N8D1 485 aaKnown RBP9.91□□□□□ -0.82
CLCN3-206ENST00000507875 ESF1Q9H501 851 aaKnown RBP9.91□□□□□ -0.82
CLCN3-206ENST00000507875 IGSF5Q9NSI5 407 aa9.91□□□□□ -0.82
CLCN3-206ENST00000507875 CSB-PGBD3P0DP91 1061 aa9.9□□□□□ -0.82
CLCN3-206ENST00000507875 PUS7Q96PZ0 661 aaKnown RBP9.9□□□□□ -0.82
CLCN3-206ENST00000507875 EFCAB6Q5THR3 1501 aa9.9□□□□□ -0.83
CLCN3-206ENST00000507875 IRX6P78412 446 aaPredicted RBP9.9□□□□□ -0.83
CLCN3-206ENST00000507875 PPP2R2DQ66LE6 453 aa9.9□□□□□ -0.83
CLCN3-206ENST00000507875 CAMSAP1Q5T5Y3 1602 aa9.89□□□□□ -0.83
CLCN3-206ENST00000507875 AP1G2O75843 785 aa9.89□□□□□ -0.83
CLCN3-206ENST00000507875 UCN2Q96RP3 112 aa9.89□□□□□ -0.83
CLCN3-206ENST00000507875 PCDHB15Q9Y5E8 787 aa9.89□□□□□ -0.83
CLCN3-206ENST00000507875 PPP1R12CQ9BZL4 782 aa9.89□□□□□ -0.83
CLCN3-206ENST00000507875 HMX1Q9NP08 348 aaPredicted RBP9.89□□□□□ -0.83
CLCN3-206ENST00000507875 VAC14Q08AM6 782 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms