RNA–Protein interactions for RNA: ENST00000506409.1

MED28-204, Transcript of mediator complex subunit 28, humanhuman

TSL 2

Gene MED28, Length 347 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-204ENST00000506409 SBNO2Q9Y2G9 1366 aa22.03■■□□□ 1.12
MED28-204ENST00000506409 RBM6P78332 1123 aaKnown RBP22.02■■□□□ 1.12
MED28-204ENST00000506409 CABP1Q9NZU7 370 aa22.02■■□□□ 1.12
MED28-204ENST00000506409 TRPC5Q9UL62 973 aaPredicted RBP22.02■■□□□ 1.12
MED28-204ENST00000506409 BCL9LQ86UU0 1499 aa22.02■■□□□ 1.12
MED28-204ENST00000506409 TIMELESSQ9UNS1 1208 aa22.01■■□□□ 1.11
MED28-204ENST00000506409 CDK12Q9NYV4 1490 aaPredicted RBP22.01■■□□□ 1.11
MED28-204ENST00000506409 SLIT2O94813 1529 aa22■■□□□ 1.11
MED28-204ENST00000506409 ATRNO75882 1429 aa21.99■■□□□ 1.11
MED28-204ENST00000506409 CCER1Q8TC90 406 aaPredicted RBP21.99■■□□□ 1.11
MED28-204ENST00000506409 ATAD2Q6PL18 1390 aa21.99■■□□□ 1.11
MED28-204ENST00000506409 UNC5CLQ8IV45 518 aa21.97■■□□□ 1.11
MED28-204ENST00000506409 NUTM2GQ5VZR2 741 aa21.96■■□□□ 1.11
MED28-204ENST00000506409 ABTB2Q8N961 1025 aa21.96■■□□□ 1.11
MED28-204ENST00000506409 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.96■■□□□ 1.11
MED28-204ENST00000506409 CRYBG1Q9Y4K1 1723 aa21.96■■□□□ 1.11
MED28-204ENST00000506409 BRD4O60885 1362 aaPredicted RBP21.96■■□□□ 1.11
MED28-204ENST00000506409 USP6P35125 1406 aa21.96■■□□□ 1.11
MED28-204ENST00000506409 RGS12O14924 1447 aa21.95■■□□□ 1.1
MED28-204ENST00000506409 FAM83GA6ND36 823 aa21.94■■□□□ 1.1
MED28-204ENST00000506409 PLCH1Q4KWH8 1693 aa21.94■■□□□ 1.1
MED28-204ENST00000506409 ST20-MTHFSA0A0A6YYL1 179 aa21.93■■□□□ 1.1
MED28-204ENST00000506409 NWD2Q9ULI1 1742 aa21.92■■□□□ 1.1
MED28-204ENST00000506409 GJD4Q96KN9 370 aaPredicted RBP21.92■■□□□ 1.1
MED28-204ENST00000506409 PHRF1Q9P1Y6 1649 aaKnown RBP21.91■■□□□ 1.1
MED28-204ENST00000506409 ZNF692Q9BU19 519 aaPredicted RBP21.91■■□□□ 1.1
MED28-204ENST00000506409 USP47Q96K76 1375 aa21.9■■□□□ 1.1
MED28-204ENST00000506409 COL14A1Q05707 1796 aaKnown RBP21.9■■□□□ 1.1
MED28-204ENST00000506409 NLRP13Q86W25 1043 aa21.9■■□□□ 1.1
MED28-204ENST00000506409 TESK2Q96S53 571 aa21.9■■□□□ 1.1
MED28-204ENST00000506409 PRDM11Q9NQV5 511 aa21.9■■□□□ 1.1
MED28-204ENST00000506409 BTG4Q9NY30 223 aa21.89■■□□□ 1.09
MED28-204ENST00000506409 SSH2Q76I76 1423 aa21.89■■□□□ 1.09
MED28-204ENST00000506409 KIAA0232Q92628 1395 aa21.88■■□□□ 1.09
MED28-204ENST00000506409 USP19O94966 1318 aa21.88■■□□□ 1.09
MED28-204ENST00000506409 SLC24A1O60721 1099 aa21.88■■□□□ 1.09
MED28-204ENST00000506409 AKAP12Q02952 1782 aa21.88■■□□□ 1.09
MED28-204ENST00000506409 CPSF1Q10570 1443 aaKnown RBP21.88■■□□□ 1.09
MED28-204ENST00000506409 VPS72Q15906 364 aa21.87■■□□□ 1.09
MED28-204ENST00000506409 TMC1Q8TDI8 760 aa21.87■■□□□ 1.09
MED28-204ENST00000506409 NRKQ7Z2Y5 1582 aa21.87■■□□□ 1.09
MED28-204ENST00000506409 KTN1Q86UP2 1357 aaKnown RBP21.87■■□□□ 1.09
MED28-204ENST00000506409 NLRP6P59044 892 aa21.86■■□□□ 1.09
MED28-204ENST00000506409 ZC3H6P61129 1189 aaKnown RBP21.86■■□□□ 1.09
MED28-204ENST00000506409 PUS7Q96PZ0 661 aaKnown RBP21.86■■□□□ 1.09
MED28-204ENST00000506409 CCDC9Q9Y3X0 531 aaKnown RBP21.86■■□□□ 1.09
MED28-204ENST00000506409 GLI3P10071 1580 aa21.86■■□□□ 1.09
MED28-204ENST00000506409 TTC21BQ7Z4L5 1316 aa21.85■■□□□ 1.09
MED28-204ENST00000506409 NRAPQ86VF7 1730 aa21.85■■□□□ 1.09
MED28-204ENST00000506409 CHRNA2Q15822 529 aa21.84■■□□□ 1.09
MED28-204ENST00000506409 PIK3C2AO00443 1686 aa21.83■■□□□ 1.09
MED28-204ENST00000506409 GCP02774 474 aa21.83■■□□□ 1.09
MED28-204ENST00000506409 SLC12A5Q9H2X9 1139 aa21.83■■□□□ 1.09
MED28-204ENST00000506409 TTC21AQ8NDW8 1320 aa21.82■■□□□ 1.08
MED28-204ENST00000506409 MON2Q7Z3U7 1717 aa21.82■■□□□ 1.08
MED28-204ENST00000506409 CPDO75976 1380 aa21.82■■□□□ 1.08
MED28-204ENST00000506409 CD163L1Q9NR16 1453 aa21.82■■□□□ 1.08
MED28-204ENST00000506409 TMF1P82094 1093 aa21.81■■□□□ 1.08
MED28-204ENST00000506409 HDGFL2Q7Z4V5 671 aaPredicted RBP21.81■■□□□ 1.08
MED28-204ENST00000506409 NINLQ9Y2I6 1382 aa21.8■■□□□ 1.08
MED28-204ENST00000506409 UPF1Q92900 1129 aaKnown RBP eCLIP21.8■■□□□ 1.08
MED28-204ENST00000506409 TERF2IPQ9NYB0 399 aa21.8■■□□□ 1.08
MED28-204ENST00000506409 SLIT3O75094 1523 aa21.8■■□□□ 1.08
MED28-204ENST00000506409 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.78■■□□□ 1.08
MED28-204ENST00000506409 A0A1W2PP64 1363 aa21.77■■□□□ 1.08
MED28-204ENST00000506409 STRN4Q9NRL3 753 aa21.77■■□□□ 1.08
MED28-204ENST00000506409 EDC4Q6P2E9 1401 aaKnown RBP21.76■■□□□ 1.07
MED28-204ENST00000506409 SPATA31A5Q5VU36 1347 aa21.76■■□□□ 1.07
MED28-204ENST00000506409 SPATA31A7Q8IWB4 1347 aa21.76■■□□□ 1.07
MED28-204ENST00000506409 ZBTB7CA1YPR0 619 aa21.75■■□□□ 1.07
MED28-204ENST00000506409 ONECUT3O60422 494 aaPredicted RBP21.75■■□□□ 1.07
MED28-204ENST00000506409 SEPT12Q8IYM1 358 aa21.75■■□□□ 1.07
MED28-204ENST00000506409 A0A0G2JS52 829 aa21.74■■□□□ 1.07
MED28-204ENST00000506409 EVA1CP58658 441 aa21.74■■□□□ 1.07
MED28-204ENST00000506409 MYT1Q01538 1121 aa21.74■■□□□ 1.07
MED28-204ENST00000506409 FAM98CQ17RN3 349 aaKnown RBP21.74■■□□□ 1.07
MED28-204ENST00000506409 CDCA8Q53HL2 280 aa21.74■■□□□ 1.07
MED28-204ENST00000506409 KCNH5Q8NCM2 988 aa21.74■■□□□ 1.07
MED28-204ENST00000506409 LMO7Q8WWI1 1683 aa21.74■■□□□ 1.07
MED28-204ENST00000506409 CAMTA1Q9Y6Y1 1673 aa21.74■■□□□ 1.07
MED28-204ENST00000506409 SOX12O15370 315 aa21.73■■□□□ 1.07
MED28-204ENST00000506409 NME9Q86XW9 330 aa21.73■■□□□ 1.07
MED28-204ENST00000506409 AATKQ6ZMQ8 1374 aa21.72■■□□□ 1.07
MED28-204ENST00000506409 USP31Q70CQ4 1352 aa21.72■■□□□ 1.07
MED28-204ENST00000506409 ZRANB1Q9UGI0 708 aa21.71■■□□□ 1.07
MED28-204ENST00000506409 SPATA31A1Q5TZJ5 1347 aa21.71■■□□□ 1.07
MED28-204ENST00000506409 BRWD3Q6RI45 1802 aa21.7■■□□□ 1.06
MED28-204ENST00000506409 ANKRD36BQ8N2N9 1353 aa21.7■■□□□ 1.06
MED28-204ENST00000506409 COL5A2P05997 1499 aaPredicted RBP21.69■■□□□ 1.06
MED28-204ENST00000506409 EIF4G2P78344 907 aaKnown RBP eCLIP21.68■■□□□ 1.06
MED28-204ENST00000506409 LARP1Q6PKG0 1096 aaKnown RBP21.68■■□□□ 1.06
MED28-204ENST00000506409 ARHGEF25Q86VW2 580 aa21.68■■□□□ 1.06
MED28-204ENST00000506409 USP35Q9P2H5 1018 aa21.68■■□□□ 1.06
MED28-204ENST00000506409 NFAT5O94916 1531 aa21.68■■□□□ 1.06
MED28-204ENST00000506409 USP54Q70EL1 1684 aa21.68■■□□□ 1.06
MED28-204ENST00000506409 KRT27Q7Z3Y8 459 aa21.67■■□□□ 1.06
MED28-204ENST00000506409 EP400Q96L91 3159 aa21.67■■□□□ 1.06
MED28-204ENST00000506409 COL18A1P39060 1754 aa21.65■■□□□ 1.06
MED28-204ENST00000506409 THSD7AQ9UPZ6 1657 aa21.65■■□□□ 1.06
MED28-204ENST00000506409 OVOS2A0A0J9YW53 1432 aa21.64■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms