RNA–Protein interactions for RNA: ENST00000505199.5

SNCA-208, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 411 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-208ENST00000505199 EDC4Q6P2E9 1401 aaKnown RBP17.3■□□□□ 0.36
SNCA-208ENST00000505199 MYOM1P52179 1685 aa17.3■□□□□ 0.36
SNCA-208ENST00000505199 NRKQ7Z2Y5 1582 aa17.3■□□□□ 0.36
SNCA-208ENST00000505199 KTN1Q86UP2 1357 aaKnown RBP17.29■□□□□ 0.36
SNCA-208ENST00000505199 TMC1Q8TDI8 760 aa17.29■□□□□ 0.36
SNCA-208ENST00000505199 DDX17Q92841 729 aaKnown RBP17.29■□□□□ 0.36
SNCA-208ENST00000505199 SLC12A5Q9H2X9 1139 aa17.29■□□□□ 0.36
SNCA-208ENST00000505199 A0A1W2PP64 1363 aa17.28■□□□□ 0.36
SNCA-208ENST00000505199 USP54Q70EL1 1684 aa17.26■□□□□ 0.35
SNCA-208ENST00000505199 KIF7Q2M1P5 1343 aa17.26■□□□□ 0.35
SNCA-208ENST00000505199 TTC21BQ7Z4L5 1316 aa17.24■□□□□ 0.35
SNCA-208ENST00000505199 XPCQ01831 940 aaPredicted RBP17.24■□□□□ 0.35
SNCA-208ENST00000505199 USP31Q70CQ4 1352 aa17.24■□□□□ 0.35
SNCA-208ENST00000505199 CCDC7Q96M83 1385 aa17.24■□□□□ 0.35
SNCA-208ENST00000505199 C11orf95C9JLR9 678 aaPredicted RBP17.23■□□□□ 0.35
SNCA-208ENST00000505199 NLRP13Q86W25 1043 aa17.23■□□□□ 0.35
SNCA-208ENST00000505199 CRYBG1Q9Y4K1 1723 aa17.22■□□□□ 0.35
SNCA-208ENST00000505199 PAK3O75914 559 aaPredicted RBP17.22■□□□□ 0.35
SNCA-208ENST00000505199 ABTB2Q8N961 1025 aa17.22■□□□□ 0.35
SNCA-208ENST00000505199 USP19O94966 1318 aa17.21■□□□□ 0.35
SNCA-208ENST00000505199 WASHC2AQ641Q2 1341 aa17.21■□□□□ 0.35
SNCA-208ENST00000505199 PIK3C2AO00443 1686 aa17.21■□□□□ 0.35
SNCA-208ENST00000505199 ABCA3Q99758 1704 aa17.2■□□□□ 0.34
SNCA-208ENST00000505199 SLIT3O75094 1523 aa17.19■□□□□ 0.34
SNCA-208ENST00000505199 MARF1Q9Y4F3 1742 aaKnown RBP17.18■□□□□ 0.34
SNCA-208ENST00000505199 NSD2O96028 1365 aa17.18■□□□□ 0.34
SNCA-208ENST00000505199 KCNH5Q8NCM2 988 aa17.18■□□□□ 0.34
SNCA-208ENST00000505199 CGNL1Q0VF96 1302 aa17.18■□□□□ 0.34
SNCA-208ENST00000505199 CPDO75976 1380 aa17.17■□□□□ 0.34
SNCA-208ENST00000505199 LMOD2Q6P5Q4 547 aa17.17■□□□□ 0.34
SNCA-208ENST00000505199 PHRF1Q9P1Y6 1649 aaKnown RBP17.17■□□□□ 0.34
SNCA-208ENST00000505199 OVOS2A0A0J9YW53 1432 aa17.16■□□□□ 0.34
SNCA-208ENST00000505199 OVOS2Q6IE36 1432 aa17.16■□□□□ 0.34
SNCA-208ENST00000505199 NLRP6P59044 892 aa17.16■□□□□ 0.34
SNCA-208ENST00000505199 LRP6O75581 1613 aa17.16■□□□□ 0.34
SNCA-208ENST00000505199 ABCC6O95255 1503 aa17.16■□□□□ 0.34
SNCA-208ENST00000505199 NSD3Q9BZ95 1437 aa17.15■□□□□ 0.34
SNCA-208ENST00000505199 PANK3Q9H999 370 aa17.15■□□□□ 0.34
SNCA-208ENST00000505199 NPC1L1Q9UHC9 1359 aa17.15■□□□□ 0.34
SNCA-208ENST00000505199 KIF20BQ96Q89 1820 aa17.14■□□□□ 0.34
SNCA-208ENST00000505199 CARD14Q9BXL6 1004 aa17.14■□□□□ 0.33
SNCA-208ENST00000505199 FYB1O15117 783 aa17.13■□□□□ 0.33
SNCA-208ENST00000505199 GCP02774 474 aa17.13■□□□□ 0.33
SNCA-208ENST00000505199 HAP1P54257 671 aaPredicted RBP17.13■□□□□ 0.33
SNCA-208ENST00000505199 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.13■□□□□ 0.33
SNCA-208ENST00000505199 POLR3GLQ9BT43 218 aa17.13■□□□□ 0.33
SNCA-208ENST00000505199 COG3Q96JB2 828 aa17.12■□□□□ 0.33
SNCA-208ENST00000505199 KNSTRNQ9Y448 316 aa17.12■□□□□ 0.33
SNCA-208ENST00000505199 NWD2Q9ULI1 1742 aa17.12■□□□□ 0.33
SNCA-208ENST00000505199 ANKRD26Q9UPS8 1709 aa17.11■□□□□ 0.33
SNCA-208ENST00000505199 COL14A1Q05707 1796 aaKnown RBP17.11■□□□□ 0.33
SNCA-208ENST00000505199 PER1O15534 1290 aaPredicted RBP17.11■□□□□ 0.33
SNCA-208ENST00000505199 FNBP4Q8N3X1 1017 aaPredicted RBP17.11■□□□□ 0.33
SNCA-208ENST00000505199 MEX3CQ5U5Q3 659 aaKnown RBP17.1■□□□□ 0.33
SNCA-208ENST00000505199 NME9Q86XW9 330 aa17.1■□□□□ 0.33
SNCA-208ENST00000505199 KIF24Q5T7B8 1368 aa17.1■□□□□ 0.33
SNCA-208ENST00000505199 NFAT5O94916 1531 aa17.1■□□□□ 0.33
SNCA-208ENST00000505199 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.1■□□□□ 0.33
SNCA-208ENST00000505199 NUTM2BA6NNL0 878 aaPredicted RBP17.09■□□□□ 0.33
SNCA-208ENST00000505199 NUTM2EB1AL46 878 aaPredicted RBP17.09■□□□□ 0.33
SNCA-208ENST00000505199 NUTM2AQ8IVF1 878 aaPredicted RBP17.09■□□□□ 0.33
SNCA-208ENST00000505199 SLIT2O94813 1529 aa17.09■□□□□ 0.33
SNCA-208ENST00000505199 AATKQ6ZMQ8 1374 aa17.08■□□□□ 0.32
SNCA-208ENST00000505199 ZNF772Q68DY9 489 aaPredicted RBP17.08■□□□□ 0.32
SNCA-208ENST00000505199 CABLES1Q8TDN4 633 aa17.08■□□□□ 0.32
SNCA-208ENST00000505199 PRDM11Q9NQV5 511 aa17.07■□□□□ 0.32
SNCA-208ENST00000505199 KIAA0232Q92628 1395 aa17.06■□□□□ 0.32
SNCA-208ENST00000505199 ADAMTS2O95450 1211 aa17.06■□□□□ 0.32
SNCA-208ENST00000505199 AMER1Q5JTC6 1135 aaPredicted RBP17.06■□□□□ 0.32
SNCA-208ENST00000505199 NUTM2GQ5VZR2 741 aa17.06■□□□□ 0.32
SNCA-208ENST00000505199 ARHGEF25Q86VW2 580 aa17.06■□□□□ 0.32
SNCA-208ENST00000505199 NGLY1Q96IV0 654 aa17.06■□□□□ 0.32
SNCA-208ENST00000505199 LMO7Q8WWI1 1683 aa17.05■□□□□ 0.32
SNCA-208ENST00000505199 C8orf37Q96NL8 207 aa17.05■□□□□ 0.32
SNCA-208ENST00000505199 RTL1A6NKG5 1358 aa17.04■□□□□ 0.32
SNCA-208ENST00000505199 PLCH1Q4KWH8 1693 aa17.04■□□□□ 0.32
SNCA-208ENST00000505199 ZNF316A6NFI3 1004 aaPredicted RBP17.04■□□□□ 0.32
SNCA-208ENST00000505199 FAM83GA6ND36 823 aa17.03■□□□□ 0.32
SNCA-208ENST00000505199 PHF23Q9BUL5 403 aaPredicted RBP17.03■□□□□ 0.32
SNCA-208ENST00000505199 GGNBP2Q9H3C7 697 aa17.03■□□□□ 0.32
SNCA-208ENST00000505199 BCL9LQ86UU0 1499 aa17.03■□□□□ 0.32
SNCA-208ENST00000505199 BLMP54132 1417 aaPredicted RBP17.03■□□□□ 0.32
SNCA-208ENST00000505199 LTN1O94822 1766 aa17.02■□□□□ 0.31
SNCA-208ENST00000505199 COL18A1P39060 1754 aa17.02■□□□□ 0.31
SNCA-208ENST00000505199 AFF2P51816 1311 aa17.01■□□□□ 0.31
SNCA-208ENST00000505199 UNC5CLQ8IV45 518 aa17.01■□□□□ 0.31
SNCA-208ENST00000505199 NRAPQ86VF7 1730 aa17.01■□□□□ 0.31
SNCA-208ENST00000505199 ZC3H6P61129 1189 aaKnown RBP17■□□□□ 0.31
SNCA-208ENST00000505199 ZRANB1Q9UGI0 708 aa17■□□□□ 0.31
SNCA-208ENST00000505199 USP21Q9UK80 565 aa17■□□□□ 0.31
SNCA-208ENST00000505199 TRPC5Q9UL62 973 aaPredicted RBP17■□□□□ 0.31
SNCA-208ENST00000505199 SMG6Q86US8 1419 aaKnown RBP16.99■□□□□ 0.31
SNCA-208ENST00000505199 CAMTA1Q9Y6Y1 1673 aa16.98■□□□□ 0.31
SNCA-208ENST00000505199 ATRNO75882 1429 aa16.98■□□□□ 0.31
SNCA-208ENST00000505199 VPS72Q15906 364 aa16.98■□□□□ 0.31
SNCA-208ENST00000505199 IP6K1Q92551 441 aa16.98■□□□□ 0.31
SNCA-208ENST00000505199 BTG4Q9NY30 223 aa16.98■□□□□ 0.31
SNCA-208ENST00000505199 FLT4P35916 1363 aa16.98■□□□□ 0.31
SNCA-208ENST00000505199 COL5A2P05997 1499 aaPredicted RBP16.98■□□□□ 0.31
SNCA-208ENST00000505199 MORC1Q86VD1 984 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms