RNA–Protein interactions for RNA: ENST00000504788.5

LMNB1-208, Transcript of lamin B1, humanhuman

TSL 2

Gene LMNB1, Length 1,801 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-208ENST00000504788 TMF1P82094 1093 aa6.94□□□□□ -1.3
LMNB1-208ENST00000504788 USP6P35125 1406 aa6.94□□□□□ -1.3
LMNB1-208ENST00000504788 NINLQ9Y2I6 1382 aa6.94□□□□□ -1.3
LMNB1-208ENST00000504788 ACEP12821 1306 aa6.94□□□□□ -1.3
LMNB1-208ENST00000504788 PER1O15534 1290 aaPredicted RBP6.94□□□□□ -1.3
LMNB1-208ENST00000504788 SLC24A1O60721 1099 aa6.94□□□□□ -1.3
LMNB1-208ENST00000504788 CARD14Q9BXL6 1004 aa6.94□□□□□ -1.3
LMNB1-208ENST00000504788 SLC12A5Q9H2X9 1139 aa6.94□□□□□ -1.3
LMNB1-208ENST00000504788 CABP1Q9NZU7 370 aa6.94□□□□□ -1.3
LMNB1-208ENST00000504788 SHPRHQ149N8 1683 aa6.93□□□□□ -1.3
LMNB1-208ENST00000504788 ANKRD36BQ8N2N9 1353 aa6.93□□□□□ -1.3
LMNB1-208ENST00000504788 UBAP1LF5GYI3 381 aa6.93□□□□□ -1.3
LMNB1-208ENST00000504788 TOM1O60784 492 aa6.93□□□□□ -1.3
LMNB1-208ENST00000504788 DDX17Q92841 729 aaKnown RBP6.93□□□□□ -1.3
LMNB1-208ENST00000504788 PHF8Q9UPP1 1060 aa6.93□□□□□ -1.3
LMNB1-208ENST00000504788 MED1Q15648 1581 aaPredicted RBP6.93□□□□□ -1.3
LMNB1-208ENST00000504788 ANKRD26Q9UPS8 1709 aa6.92□□□□□ -1.3
LMNB1-208ENST00000504788 SRPK2P78362 688 aaKnown RBP6.92□□□□□ -1.3
LMNB1-208ENST00000504788 ESCO1Q5FWF5 840 aa6.92□□□□□ -1.3
LMNB1-208ENST00000504788 C14orf37Q86TY3 774 aa6.92□□□□□ -1.3
LMNB1-208ENST00000504788 FOXO3O43524 673 aa6.92□□□□□ -1.3
LMNB1-208ENST00000504788 PMFBP1Q8TBY8 1022 aa6.92□□□□□ -1.3
LMNB1-208ENST00000504788 KIF20BQ96Q89 1820 aa6.92□□□□□ -1.3
LMNB1-208ENST00000504788 PHRF1Q9P1Y6 1649 aaKnown RBP6.91□□□□□ -1.3
LMNB1-208ENST00000504788 FBXO41Q8TF61 875 aa6.91□□□□□ -1.3
LMNB1-208ENST00000504788 SBNO1A3KN83 1393 aa6.91□□□□□ -1.3
LMNB1-208ENST00000504788 OVOS2A0A0J9YW53 1432 aa6.9□□□□□ -1.3
LMNB1-208ENST00000504788 OVOS2Q6IE36 1432 aa6.9□□□□□ -1.3
LMNB1-208ENST00000504788 EDC4Q6P2E9 1401 aaKnown RBP6.9□□□□□ -1.3
LMNB1-208ENST00000504788 BRD4O60885 1362 aaPredicted RBP6.9□□□□□ -1.3
LMNB1-208ENST00000504788 SLIT3O75094 1523 aa6.9□□□□□ -1.31
LMNB1-208ENST00000504788 SPATA31A3Q5VYP0 1347 aa6.9□□□□□ -1.31
LMNB1-208ENST00000504788 NPHP3Q7Z494 1330 aa6.9□□□□□ -1.31
LMNB1-208ENST00000504788 CDCA8Q53HL2 280 aa6.9□□□□□ -1.31
LMNB1-208ENST00000504788 SAMD1Q6SPF0 538 aaPredicted RBP6.9□□□□□ -1.31
LMNB1-208ENST00000504788 TNS3Q68CZ2 1445 aa6.89□□□□□ -1.31
LMNB1-208ENST00000504788 USP31Q70CQ4 1352 aa6.89□□□□□ -1.31
LMNB1-208ENST00000504788 PNPLA6Q8IY17 1366 aa6.89□□□□□ -1.31
LMNB1-208ENST00000504788 NFAT5O94916 1531 aa6.89□□□□□ -1.31
LMNB1-208ENST00000504788 COL18A1P39060 1754 aa6.89□□□□□ -1.31
LMNB1-208ENST00000504788 HSPA1LP34931 641 aa6.89□□□□□ -1.31
LMNB1-208ENST00000504788 KTN1Q86UP2 1357 aaKnown RBP6.89□□□□□ -1.31
LMNB1-208ENST00000504788 TTC21BQ7Z4L5 1316 aa6.88□□□□□ -1.31
LMNB1-208ENST00000504788 ZNF316A6NFI3 1004 aaPredicted RBP6.88□□□□□ -1.31
LMNB1-208ENST00000504788 PIP4K2BP78356 416 aa6.88□□□□□ -1.31
LMNB1-208ENST00000504788 XPCQ01831 940 aaPredicted RBP6.88□□□□□ -1.31
LMNB1-208ENST00000504788 AMER1Q5JTC6 1135 aaPredicted RBP6.88□□□□□ -1.31
LMNB1-208ENST00000504788 ZNF692Q9BU19 519 aaPredicted RBP6.88□□□□□ -1.31
LMNB1-208ENST00000504788 PANK3Q9H999 370 aa6.88□□□□□ -1.31
LMNB1-208ENST00000504788 LRP6O75581 1613 aa6.88□□□□□ -1.31
LMNB1-208ENST00000504788 USP19O94966 1318 aa6.88□□□□□ -1.31
LMNB1-208ENST00000504788 LMO7Q8WWI1 1683 aa6.88□□□□□ -1.31
LMNB1-208ENST00000504788 NSD3Q9BZ95 1437 aa6.88□□□□□ -1.31
LMNB1-208ENST00000504788 FYB1O15117 783 aa6.87□□□□□ -1.31
LMNB1-208ENST00000504788 KRT28Q7Z3Y7 464 aa6.87□□□□□ -1.31
LMNB1-208ENST00000504788 NPC1L1Q9UHC9 1359 aa6.87□□□□□ -1.31
LMNB1-208ENST00000504788 PEAK1Q9H792 1746 aa6.87□□□□□ -1.31
LMNB1-208ENST00000504788 ZRANB1Q9UGI0 708 aa6.87□□□□□ -1.31
LMNB1-208ENST00000504788 LTN1O94822 1766 aa6.87□□□□□ -1.31
LMNB1-208ENST00000504788 TTC21AQ8NDW8 1320 aa6.86□□□□□ -1.31
LMNB1-208ENST00000504788 MAP2P11137 1827 aaKnown RBP6.86□□□□□ -1.31
LMNB1-208ENST00000504788 NGDNQ8NEJ9 315 aaKnown RBP6.86□□□□□ -1.31
LMNB1-208ENST00000504788 TMC1Q8TDI8 760 aa6.86□□□□□ -1.31
LMNB1-208ENST00000504788 TERF2IPQ9NYB0 399 aa6.86□□□□□ -1.31
LMNB1-208ENST00000504788 RGPD5Q99666 1765 aa6.86□□□□□ -1.31
LMNB1-208ENST00000504788 NME9Q86XW9 330 aa6.85□□□□□ -1.31
LMNB1-208ENST00000504788 JCADQ9P266 1359 aa6.85□□□□□ -1.31
LMNB1-208ENST00000504788 NRAPQ86VF7 1730 aa6.85□□□□□ -1.31
LMNB1-208ENST00000504788 PSME1Q06323 249 aa6.85□□□□□ -1.31
LMNB1-208ENST00000504788 LRRC59Q96AG4 307 aaKnown RBP6.85□□□□□ -1.31
LMNB1-208ENST00000504788 SMG6Q86US8 1419 aaKnown RBP6.84□□□□□ -1.31
LMNB1-208ENST00000504788 ARHGEF10O15013 1369 aa6.84□□□□□ -1.31
LMNB1-208ENST00000504788 HDGFL2Q7Z4V5 671 aaPredicted RBP6.84□□□□□ -1.31
LMNB1-208ENST00000504788 ILDR1Q86SU0 546 aaPredicted RBP6.84□□□□□ -1.31
LMNB1-208ENST00000504788 PLCH1Q4KWH8 1693 aa6.84□□□□□ -1.31
LMNB1-208ENST00000504788 NSD2O96028 1365 aa6.83□□□□□ -1.32
LMNB1-208ENST00000504788 PARD3Q8TEW0 1356 aa6.83□□□□□ -1.32
LMNB1-208ENST00000504788 DDX10Q13206 875 aaKnown RBP6.83□□□□□ -1.32
LMNB1-208ENST00000504788 NWD2Q9ULI1 1742 aa6.83□□□□□ -1.32
LMNB1-208ENST00000504788 ABCC6O95255 1503 aa6.83□□□□□ -1.32
LMNB1-208ENST00000504788 CPDO75976 1380 aa6.83□□□□□ -1.32
LMNB1-208ENST00000504788 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.83□□□□□ -1.32
LMNB1-208ENST00000504788 FBLN1P23142 703 aa6.83□□□□□ -1.32
LMNB1-208ENST00000504788 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.83□□□□□ -1.32
LMNB1-208ENST00000504788 ABTB2Q8N961 1025 aa6.83□□□□□ -1.32
LMNB1-208ENST00000504788 CABLES1Q8TDN4 633 aa6.83□□□□□ -1.32
LMNB1-208ENST00000504788 GGNBP2Q9H3C7 697 aa6.83□□□□□ -1.32
LMNB1-208ENST00000504788 CGNL1Q0VF96 1302 aa6.82□□□□□ -1.32
LMNB1-208ENST00000504788 CAMTA1Q9Y6Y1 1673 aa6.82□□□□□ -1.32
LMNB1-208ENST00000504788 SLIT2O94813 1529 aa6.82□□□□□ -1.32
LMNB1-208ENST00000504788 AATKQ6ZMQ8 1374 aa6.82□□□□□ -1.32
LMNB1-208ENST00000504788 COL14A1Q05707 1796 aaKnown RBP6.82□□□□□ -1.32
LMNB1-208ENST00000504788 GCP02774 474 aa6.82□□□□□ -1.32
LMNB1-208ENST00000504788 AKT1S1Q96B36 256 aa6.82□□□□□ -1.32
LMNB1-208ENST00000504788 POLR3GLQ9BT43 218 aa6.82□□□□□ -1.32
LMNB1-208ENST00000504788 RGPD1P0DJD0 1748 aa6.82□□□□□ -1.32
LMNB1-208ENST00000504788 RGPD2P0DJD1 1756 aa6.81□□□□□ -1.32
LMNB1-208ENST00000504788 COL3A1P02461 1466 aaPredicted RBP6.81□□□□□ -1.32
LMNB1-208ENST00000504788 HAX1O00165 279 aa6.81□□□□□ -1.32
LMNB1-208ENST00000504788 SLC4A2P04920 1241 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms