RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 ACEP12821 1306 aa25.72■■□□□ 1.71
SQSTM1-209ENST00000504627 ABCA3Q99758 1704 aa25.71■■□□□ 1.71
SQSTM1-209ENST00000504627 ALS2Q96Q42 1657 aa25.71■■□□□ 1.71
SQSTM1-209ENST00000504627 VPS72Q15906 364 aa25.71■■□□□ 1.71
SQSTM1-209ENST00000504627 PLEKHG3A1L390 1219 aa25.7■■□□□ 1.7
SQSTM1-209ENST00000504627 NBPF8Q3BBV2 869 aa25.7■■□□□ 1.7
SQSTM1-209ENST00000504627 ROCK2O75116 1388 aaKnown RBP25.69■■□□□ 1.7
SQSTM1-209ENST00000504627 CABP2Q9NPB3 220 aa25.69■■□□□ 1.7
SQSTM1-209ENST00000504627 POLR3AO14802 1390 aaPredicted RBP25.69■■□□□ 1.7
SQSTM1-209ENST00000504627 PLCH1Q4KWH8 1693 aa25.68■■□□□ 1.7
SQSTM1-209ENST00000504627 BTG4Q9NY30 223 aa25.68■■□□□ 1.7
SQSTM1-209ENST00000504627 NWD2Q9ULI1 1742 aa25.66■■□□□ 1.7
SQSTM1-209ENST00000504627 GLI3P10071 1580 aa25.66■■□□□ 1.7
SQSTM1-209ENST00000504627 NUTM2GQ5VZR2 741 aa25.66■■□□□ 1.7
SQSTM1-209ENST00000504627 TOPAZ1Q8N9V7 1692 aa25.65■■□□□ 1.7
SQSTM1-209ENST00000504627 PPIP5K1Q6PFW1 1433 aa25.65■■□□□ 1.7
SQSTM1-209ENST00000504627 PRDM11Q9NQV5 511 aa25.65■■□□□ 1.7
SQSTM1-209ENST00000504627 QRICH2Q9H0J4 1663 aa25.64■■□□□ 1.7
SQSTM1-209ENST00000504627 TRPM1Q7Z4N2 1603 aa25.64■■□□□ 1.7
SQSTM1-209ENST00000504627 ZEB1P37275 1124 aaPredicted RBP25.64■■□□□ 1.7
SQSTM1-209ENST00000504627 SEPT12Q8IYM1 358 aa25.63■■□□□ 1.69
SQSTM1-209ENST00000504627 ABTB2Q8N961 1025 aa25.63■■□□□ 1.69
SQSTM1-209ENST00000504627 EVC2Q86UK5 1308 aa25.63■■□□□ 1.69
SQSTM1-209ENST00000504627 A0A0G2JS52 829 aa25.62■■□□□ 1.69
SQSTM1-209ENST00000504627 MYT1Q01538 1121 aa25.62■■□□□ 1.69
SQSTM1-209ENST00000504627 COL14A1Q05707 1796 aaKnown RBP25.61■■□□□ 1.69
SQSTM1-209ENST00000504627 TONSLQ96HA7 1378 aa25.6■■□□□ 1.69
SQSTM1-209ENST00000504627 CABP1Q9NZU7 370 aa25.6■■□□□ 1.69
SQSTM1-209ENST00000504627 ZC3H6P61129 1189 aaKnown RBP25.59■■□□□ 1.69
SQSTM1-209ENST00000504627 CCDC125Q86Z20 511 aa25.59■■□□□ 1.69
SQSTM1-209ENST00000504627 KIAA0232Q92628 1395 aa25.58■■□□□ 1.69
SQSTM1-209ENST00000504627 ONECUT3O60422 494 aaPredicted RBP25.58■■□□□ 1.69
SQSTM1-209ENST00000504627 CHRNA2Q15822 529 aa25.57■■□□□ 1.68
SQSTM1-209ENST00000504627 CRYBG1Q9Y4K1 1723 aa25.57■■□□□ 1.68
SQSTM1-209ENST00000504627 FAM98CQ17RN3 349 aaKnown RBP25.56■■□□□ 1.68
SQSTM1-209ENST00000504627 NLRP13Q86W25 1043 aa25.56■■□□□ 1.68
SQSTM1-209ENST00000504627 EP400Q96L91 3159 aa25.55■■□□□ 1.68
SQSTM1-209ENST00000504627 KRT27Q7Z3Y8 459 aa25.55■■□□□ 1.68
SQSTM1-209ENST00000504627 CARD11Q9BXL7 1154 aa25.55■■□□□ 1.68
SQSTM1-209ENST00000504627 NRAPQ86VF7 1730 aa25.54■■□□□ 1.68
SQSTM1-209ENST00000504627 BRD4O60885 1362 aaPredicted RBP25.54■■□□□ 1.68
SQSTM1-209ENST00000504627 PHRF1Q9P1Y6 1649 aaKnown RBP25.53■■□□□ 1.68
SQSTM1-209ENST00000504627 STRN4Q9NRL3 753 aa25.53■■□□□ 1.68
SQSTM1-209ENST00000504627 SPATA31A5Q5VU36 1347 aa25.52■■□□□ 1.68
SQSTM1-209ENST00000504627 SPATA31A7Q8IWB4 1347 aa25.52■■□□□ 1.68
SQSTM1-209ENST00000504627 BRWD3Q6RI45 1802 aa25.51■■□□□ 1.67
SQSTM1-209ENST00000504627 USP6P35125 1406 aa25.5■■□□□ 1.67
SQSTM1-209ENST00000504627 EVA1CP58658 441 aa25.5■■□□□ 1.67
SQSTM1-209ENST00000504627 SF3B2Q13435 895 aaKnown RBP25.5■■□□□ 1.67
SQSTM1-209ENST00000504627 USP19O94966 1318 aa25.49■■□□□ 1.67
SQSTM1-209ENST00000504627 GCP02774 474 aa25.49■■□□□ 1.67
SQSTM1-209ENST00000504627 NLRP6P59044 892 aa25.49■■□□□ 1.67
SQSTM1-209ENST00000504627 BLMP54132 1417 aaPredicted RBP25.48■■□□□ 1.67
SQSTM1-209ENST00000504627 ZNF692Q9BU19 519 aaPredicted RBP25.47■■□□□ 1.67
SQSTM1-209ENST00000504627 NRKQ7Z2Y5 1582 aa25.46■■□□□ 1.67
SQSTM1-209ENST00000504627 CPDO75976 1380 aa25.45■■□□□ 1.67
SQSTM1-209ENST00000504627 SPATA31A1Q5TZJ5 1347 aa25.45■■□□□ 1.66
SQSTM1-209ENST00000504627 ZBTB7CA1YPR0 619 aa25.45■■□□□ 1.66
SQSTM1-209ENST00000504627 USP35Q9P2H5 1018 aa25.45■■□□□ 1.66
SQSTM1-209ENST00000504627 ZRANB1Q9UGI0 708 aa25.43■■□□□ 1.66
SQSTM1-209ENST00000504627 SBNO2Q9Y2G9 1366 aa25.43■■□□□ 1.66
SQSTM1-209ENST00000504627 SSH2Q76I76 1423 aa25.4■■□□□ 1.66
SQSTM1-209ENST00000504627 DEFB132Q7Z7B7 95 aa25.4■■□□□ 1.66
SQSTM1-209ENST00000504627 TTC21BQ7Z4L5 1316 aa25.39■■□□□ 1.66
SQSTM1-209ENST00000504627 LARP1Q6PKG0 1096 aaKnown RBP25.39■■□□□ 1.66
SQSTM1-209ENST00000504627 KTN1Q86UP2 1357 aaKnown RBP25.39■■□□□ 1.65
SQSTM1-209ENST00000504627 CAMTA1Q9Y6Y1 1673 aa25.39■■□□□ 1.65
SQSTM1-209ENST00000504627 FAM182BQ5T319 152 aa25.38■■□□□ 1.65
SQSTM1-209ENST00000504627 TMC1Q8TDI8 760 aa25.38■■□□□ 1.65
SQSTM1-209ENST00000504627 TIMELESSQ9UNS1 1208 aa25.37■■□□□ 1.65
SQSTM1-209ENST00000504627 TTC21AQ8NDW8 1320 aa25.37■■□□□ 1.65
SQSTM1-209ENST00000504627 BARGINQ6ZT62 677 aa25.35■■□□□ 1.65
SQSTM1-209ENST00000504627 TCP11L2Q8N4U5 519 aa25.35■■□□□ 1.65
SQSTM1-209ENST00000504627 KCNH5Q8NCM2 988 aa25.35■■□□□ 1.65
SQSTM1-209ENST00000504627 CPSF1Q10570 1443 aaKnown RBP25.35■■□□□ 1.65
SQSTM1-209ENST00000504627 THSD7AQ9UPZ6 1657 aa25.35■■□□□ 1.65
SQSTM1-209ENST00000504627 SLIT3O75094 1523 aa25.34■■□□□ 1.65
SQSTM1-209ENST00000504627 PIK3C2AO00443 1686 aa25.34■■□□□ 1.65
SQSTM1-209ENST00000504627 SOX12O15370 315 aa25.34■■□□□ 1.65
SQSTM1-209ENST00000504627 BAG6P46379 1132 aa25.34■■□□□ 1.65
SQSTM1-209ENST00000504627 LMO7Q8WWI1 1683 aa25.33■■□□□ 1.65
SQSTM1-209ENST00000504627 AATKQ6ZMQ8 1374 aa25.32■■□□□ 1.64
SQSTM1-209ENST00000504627 AKAP12Q02952 1782 aa25.32■■□□□ 1.64
SQSTM1-209ENST00000504627 PDE3BQ13370 1112 aa25.32■■□□□ 1.64
SQSTM1-209ENST00000504627 HDGFL2Q7Z4V5 671 aaPredicted RBP25.32■■□□□ 1.64
SQSTM1-209ENST00000504627 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.32■■□□□ 1.64
SQSTM1-209ENST00000504627 THRAP3Q9Y2W1 955 aaKnown RBP25.32■■□□□ 1.64
SQSTM1-209ENST00000504627 COL5A2P05997 1499 aaPredicted RBP25.31■■□□□ 1.64
SQSTM1-209ENST00000504627 ST20-MTHFSA0A0A6YYL1 179 aa25.3■■□□□ 1.64
SQSTM1-209ENST00000504627 FAM196AQ6ZSG2 479 aa25.29■■□□□ 1.64
SQSTM1-209ENST00000504627 SLC12A5Q9H2X9 1139 aa25.29■■□□□ 1.64
SQSTM1-209ENST00000504627 SLC24A1O60721 1099 aa25.28■■□□□ 1.64
SQSTM1-209ENST00000504627 TOM1L2Q6ZVM7 507 aa25.28■■□□□ 1.64
SQSTM1-209ENST00000504627 TERF2IPQ9NYB0 399 aa25.28■■□□□ 1.64
SQSTM1-209ENST00000504627 CRB1P82279 1406 aa25.28■■□□□ 1.64
SQSTM1-209ENST00000504627 ARHGEF25Q86VW2 580 aa25.27■■□□□ 1.64
SQSTM1-209ENST00000504627 PUS7Q96PZ0 661 aaKnown RBP25.27■■□□□ 1.64
SQSTM1-209ENST00000504627 AXIN2Q9Y2T1 843 aa25.25■■□□□ 1.63
SQSTM1-209ENST00000504627 CSB-PGBD3P0DP91 1061 aa25.24■■□□□ 1.63
SQSTM1-209ENST00000504627 EN1Q05925 392 aaPredicted RBP25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms